View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20381_low_10 (Length: 516)

Name: NF20381_low_10
Description: NF20381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20381_low_10
NF20381_low_10
[»] chr3 (20 HSPs)
chr3 (16-499)||(6838020-6838503)
chr3 (20-465)||(8472022-8472449)
chr3 (286-499)||(4388326-4388539)
chr3 (152-369)||(8568206-8568420)
chr3 (141-218)||(5250877-5250954)
chr3 (293-465)||(5268517-5268689)
chr3 (150-217)||(5268765-5268832)
chr3 (155-218)||(6448040-6448103)
chr3 (404-462)||(6479489-6479547)
chr3 (141-218)||(4388181-4388258)
chr3 (18-83)||(6721094-6721159)
chr3 (404-465)||(6947730-6947791)
chr3 (404-465)||(8455115-8455176)
chr3 (404-463)||(5299194-5299253)
chr3 (404-463)||(6448289-6448348)
chr3 (422-465)||(8568473-8568516)
chr3 (404-462)||(6553945-6554003)
chr3 (404-462)||(8590193-8590251)
chr3 (404-465)||(6519669-6519730)
chr3 (404-456)||(5281154-5281206)
[»] chr7 (2 HSPs)
chr7 (152-465)||(6572550-6572866)
chr7 (17-90)||(6572433-6572506)
[»] scaffold0425 (1 HSPs)
scaffold0425 (404-462)||(6984-7042)


Alignment Details
Target: chr3 (Bit Score: 452; Significance: 0; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 16 - 499
Target Start/End: Original strand, 6838020 - 6838503
Alignment:
Q  16 tgtgaagatttggtttgataatctaaaacatgaggtatatgaagtagatcaattgttggatgagattgatacaaatgtaaaactcaagagcaaggatatg 115  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6838020 tgtgaagaagtggtttgataatctaaaacatgaggtatatgaagtagatcaattgttggatgagattgatacaaatgtaaaactcaagagcaaggatatg 6838119  T
Q  116 ttgggatcaatggttaaatactggctttcagctatcactaatccatttgaatctaggatcaaagagttgctaggcaagctaaaatatcttgcagagcaaa 215  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6838120 ttgggatcaaaggttaaatacttgctttcagctatcactaatccatttgaatctaggatcaaagagttgctaggcaagctaaaatatcttgcagagcaaa 6838219  T
Q  216 agggtgatttgggattgacacaaagaagttgcactagttatgaaggcgcggttagcccacaatcctcaaaaagatctccaactgcatctttggtggatga 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6838220 agggtgatttgggattgacacaaagaagttgcactagttatgaaggcgcggttagcccacaatcctcaaaaagatctccaactgcatctttggtggatga 6838319  T
Q  316 atcttccatacgtggtagagaaggtgaaaaagaagaaataattaactatttgctgtcttacaaggacaatgacaacaaagtatcaactatcagcatagtt 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  6838320 atcttccatacgtggtagagaaggtgaaaaagaagaaataattaactatttgctgtcttacaaggacaatggcaaccaagtatcaactatcagcatagtt 6838419  T
Q  416 ggtttgggtgggatgggaaagaccacccttgctcagcttgtctacaatgattgcagaatacaagagaagtttgaacttaaagct 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  6838420 ggtttgggtgggatgggaaagaccacccttgctcagcttgtctacaatgattgcagaatacaagagaagtttgagattaaagct 6838503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 20 - 465
Target Start/End: Complemental strand, 8472449 - 8472022
Alignment:
Q  20 aagatttggtttgataatctaaaacatgaggtatatgaagtagatcaattgttggatgagattgatacaaatgtaaaactcaagagcaaggatatgttgg 119  Q
    |||| |||| |||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||  ||||||||||             
T  8472449 aagaattggcttgatcgtctaaaacatgaggtatatgaagtagatcaattgttggatgagtttgatacaagtgtacaacgaaagagcaagg--------- 8472359  T
Q  120 gatcaatggttaaatactggctttcagctatcactaatccatttgaatctaggatcaaagagttgctaggcaagctaaaatatcttgcagagcaaaaggg 219  Q
             || || |||  ||||||||| ||| ||||| ||||||||||||||||| ||| | |||||   | ||||||  |||||| || |||||||     
T  8472358 ---------ttcaacacttcctttcagctttcattaatcgatttgaatctaggatcagagattcgctagatgaactaaaacttcttgccgatcaaaagga 8472268  T
Q  220 tgatttgggattgacacaaagaagttgcactagttatgaaggcgcggttagcccacaatcctcaaaaagatctccaactgcatctttggtggatgaatct 319  Q
    ||  |||||||| ||||| ||||||| | ||||||||||||| || |||||||  |||||||| |||||||| |||||||||||||| ||||||||||||    
T  8472267 tgtgttgggattaacacagagaagtttccctagttatgaaggtgcagttagcctgcaatcctcgaaaagatcgccaactgcatctttagtggatgaatct 8472168  T
Q  320 tccatacgtggtagagaaggtgaaaaagaagaaataattaactatttgctgtcttacaaggacaatgacaacaaagtatcaactatcagcatagttggtt 419  Q
    ||||||||||||||||||||||| ||||||||| |||| || |||||||| |||||||| ||||||| |||| |||||||||||||||||||||| ||||    
T  8472167 tccatacgtggtagagaaggtgacaaagaagaattaatcaagtatttgctttcttacaacgacaatggcaaccaagtatcaactatcagcatagtgggtt 8472068  T
Q  420 tgggtgggatgggaaagaccacccttgctcagcttgtctacaatga 465  Q
    ||  ||||||||| ||||||||||||||||||||||||||||||||    
T  8472067 tgcctgggatggggaagaccacccttgctcagcttgtctacaatga 8472022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 286 - 499
Target Start/End: Original strand, 4388326 - 4388539
Alignment:
Q  286 aagatctccaactgcatctttggtggatgaatcttccatacgtggtagagaaggtgaaaaagaagaaataattaactatttgctgtcttacaaggacaat 385  Q
    ||||| ||||||| ||||||||||||||| |||   ||||  ||||||| | ||||| ||||| ||  || | |||| ||| |||||| |||  ||||      
T  4388326 aagatttccaactacatctttggtggatggatcgagcatatatggtagaaacggtgacaaagaggagttagtcaactttttactgtctgacatagacagc 4388425  T
Q  386 gacaacaaagtatcaactatcagcatagttggtttgggtgggatgggaaagaccacccttgctcagcttgtctacaatgattgcagaatacaagagaagt 485  Q
    | |||| ||||| |||  ||||||||||| ||| | ||||| ||||| |||||||| |||||||||||||| ||||||||  |||| ||  ||||| | |    
T  4388426 ggcaaccaagtaccaataatcagcatagtgggtctcggtggaatgggtaagaccactcttgctcagcttgtgtacaatgaccgcaggatgaaagagcatt 4388525  T
Q  486 ttgaacttaaagct 499  Q
    ||||||||||||||    
T  4388526 ttgaacttaaagct 4388539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 152 - 369
Target Start/End: Original strand, 8568206 - 8568420
Alignment:
Q  152 actaatccatttgaatctaggatcaaagagttgctaggcaagctaaaatatcttgcagagcaaaagggtgatttgggattgacacaaagaagttgcacta 251  Q
    ||||||| ||||||||||||||||||||| ||| ||| || ||||||||  |||||  | ||||||| ||   |||||||||  ||||||   || ||||    
T  8568206 actaatcgatttgaatctaggatcaaagatttgttagacacgctaaaattgcttgctcatcaaaaggatgtgctgggattgaaccaaagagcctgtacta 8568305  T
Q  252 gttatgaaggcgcggttagcccacaatcctcaaaaagatctccaactgcatctttggtggatgaatcttccatacgtggtagagaaggtgaaaaagaaga 351  Q
    ||   ||||| ||||||||     |||||||||||||||  |||||||| ||||||||||||||||||| ||||  ||||||||| | ||| ||| |  |    
T  8568306 gt---gaaggtgcggttagattgaaatcctcaaaaagattgccaactgcgtctttggtggatgaatcttgcatatatggtagagatgatgataaaaataa 8568402  T
Q  352 aataattaactatttgct 369  Q
    |||||| || ||||||||    
T  8568403 aataatcaattatttgct 8568420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 141 - 218
Target Start/End: Complemental strand, 5250954 - 5250877
Alignment:
Q  141 tttcagctatcactaatccatttgaatctaggatcaaagagttgctaggcaagctaaaatatcttgcagagcaaaagg 218  Q
    ||||| || ||||||||||||||||||||||||| ||||| |||||||  |||||| ||| ||||||| |||||||||    
T  5250954 tttcatctttcactaatccatttgaatctaggattaaagaattgctagagaagctagaatttcttgcaaagcaaaagg 5250877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 293 - 465
Target Start/End: Complemental strand, 5268689 - 5268517
Alignment:
Q  293 ccaactgcatctttggtggatgaatcttccatacgtggtagagaaggtgaaaaagaagaaataattaactatttgctgtcttacaaggacaatgacaaca 392  Q
    |||||| |||||||||||||||||||   ||||  ||||||||| ||||| || || ||  |||| || | ||| |||||| |||  ||||| | ||||     
T  5268689 ccaactacatctttggtggatgaatccagcatatatggtagagatggtgacaaggaggagttaatcaattttttactgtctgacatagacaagggcaacc 5268590  T
Q  393 aagtatcaactatcagcatagttggtttgggtgggatgggaaagaccacccttgctcagcttgtctacaatga 465  Q
    | ||| |||  ||||||||||| ||| | ||||| ||||| ||||||||||||||||| || || ||||||||    
T  5268589 atgtaccaataatcagcatagtgggtctcggtggaatgggtaagaccacccttgctcaactcgtgtacaatga 5268517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 150 - 217
Target Start/End: Complemental strand, 5268832 - 5268765
Alignment:
Q  150 tcactaatccatttgaatctaggatcaaagagttgctaggcaagctaaaatatcttgcagagcaaaag 217  Q
    |||||||||||||||| |||||||||||||| |||||||  |||||| ||| ||||||| | ||||||    
T  5268832 tcactaatccatttgagtctaggatcaaagaattgctagagaagctagaatttcttgcaaaacaaaag 5268765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 155 - 218
Target Start/End: Original strand, 6448040 - 6448103
Alignment:
Q  155 aatccatttgaatctaggatcaaagagttgctaggcaagctaaaatatcttgcagagcaaaagg 218  Q
    |||||||||||||||||||||||||| ||||||   || ||| | |||||||||||||||||||    
T  6448040 aatccatttgaatctaggatcaaagacttgctaaagaatctagattatcttgcagagcaaaagg 6448103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 462
Target Start/End: Original strand, 6479489 - 6479547
Alignment:
Q  404 atcagcatagttggtttgggtgggatgggaaagaccacccttgctcagcttgtctacaa 462  Q
    ||||||||||||||||| || |||||||| || |||||||||||| ||||||| |||||    
T  6479489 atcagcatagttggtttaggagggatggggaaaaccacccttgctaagcttgtgtacaa 6479547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 141 - 218
Target Start/End: Original strand, 4388181 - 4388258
Alignment:
Q  141 tttcagctatcactaatccatttgaatctaggatcaaagagttgctaggcaagctaaaatatcttgcagagcaaaagg 218  Q
    ||||| || ||| ||||||||||||||||||||||||||| |||||||  ||| || ||| ||||||  |||||||||    
T  4388181 tttcatctttcattaatccatttgaatctaggatcaaagaattgctagagaagttagaatttcttgcgaagcaaaagg 4388258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 6721094 - 6721159
Alignment:
Q  18 tgaagatttggtttgataatctaaaacatgaggtatatgaagtagatcaattgttggatgagattg 83  Q
    |||||| |||| |||||||||| |||||||||||||| |||||||| ||| | ||||||| |||||    
T  6721094 tgaagagttggcttgataatctcaaacatgaggtatacgaagtagagcaactattggatgtgattg 6721159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 404 - 465
Target Start/End: Complemental strand, 6947791 - 6947730
Alignment:
Q  404 atcagcatagttggtttgggtgggatgggaaagaccacccttgctcagcttgtctacaatga 465  Q
    ||||||||||| ||||| || |||||||| || |||||||||||| ||||||| ||||||||    
T  6947791 atcagcatagtgggtttaggagggatggggaaaaccacccttgctaagcttgtgtacaatga 6947730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 404 - 465
Target Start/End: Complemental strand, 8455176 - 8455115
Alignment:
Q  404 atcagcatagttggtttgggtgggatgggaaagaccacccttgctcagcttgtctacaatga 465  Q
    ||||||||||| ||||| || |||||||| || |||||||||||| ||||||| ||||||||    
T  8455176 atcagcatagtcggtttaggagggatgggtaaaaccacccttgctaagcttgtgtacaatga 8455115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 463
Target Start/End: Complemental strand, 5299253 - 5299194
Alignment:
Q  404 atcagcatagttggtttgggtgggatgggaaagaccacccttgctcagcttgtctacaat 463  Q
    ||||||||||| ||| | ||||| |||||||| |||||||||||||| ||||| ||||||    
T  5299253 atcagcatagtgggtctaggtggaatgggaaaaaccacccttgctcaacttgtgtacaat 5299194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 463
Target Start/End: Original strand, 6448289 - 6448348
Alignment:
Q  404 atcagcatagttggtttgggtgggatgggaaagaccacccttgctcagcttgtctacaat 463  Q
    ||||||||||| ||| ||||||||||||| ||||||||  ||||| ||||||| ||||||    
T  6448289 atcagcatagtgggtctgggtgggatgggtaagaccacttttgctaagcttgtgtacaat 6448348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 465
Target Start/End: Original strand, 8568473 - 8568516
Alignment:
Q  422 ggtgggatgggaaagaccacccttgctcagcttgtctacaatga 465  Q
    ||||||||||| ||||||||||||||||  ||||||||||||||    
T  8568473 ggtgggatgggtaagaccacccttgctcgacttgtctacaatga 8568516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 404 - 462
Target Start/End: Original strand, 6553945 - 6554003
Alignment:
Q  404 atcagcatagttggtttgggtgggatgggaaagaccacccttgctcagcttgtctacaa 462  Q
    ||||||||||| ||||| || |||||||| || |||||||||||| ||||||| |||||    
T  6553945 atcagcatagtgggtttaggagggatggggaaaaccacccttgctaagcttgtgtacaa 6554003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 404 - 462
Target Start/End: Complemental strand, 8590251 - 8590193
Alignment:
Q  404 atcagcatagttggtttgggtgggatgggaaagaccacccttgctcagcttgtctacaa 462  Q
    ||||||||||| ||||| || |||||||| || |||||||||||| ||||||| |||||    
T  8590251 atcagcatagtcggtttaggagggatggggaaaaccacccttgctaagcttgtgtacaa 8590193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 465
Target Start/End: Original strand, 6519669 - 6519730
Alignment:
Q  404 atcagcatagttggtttgggtgggatgggaaagaccacccttgctcagcttgtctacaatga 465  Q
    ||||||||||| ||||| || || ||||| || |||||||||||||| | ||||||||||||    
T  6519669 atcagcatagtgggtttaggaggaatgggtaaaaccacccttgctcaacatgtctacaatga 6519730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 404 - 456
Target Start/End: Complemental strand, 5281206 - 5281154
Alignment:
Q  404 atcagcatagttggtttgggtgggatgggaaagaccacccttgctcagcttgt 456  Q
    |||| |||||| ||||  ||||||||||| ||||||||||||||| |||||||    
T  5281206 atcaccatagtgggttctggtgggatgggtaagaccacccttgctgagcttgt 5281154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 135; Significance: 4e-70; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 152 - 465
Target Start/End: Original strand, 6572550 - 6572866
Alignment:
Q  152 actaatccatttgaatctaggatcaaagagttgctaggcaagctaaaatatcttgcagagcaaaagggtgatttgggattgacacaaag---aagttgca 248  Q
    ||||||| || |||| |||||||||| || ||||| | ||| ||||||| ||| | ||||||||||| ||  ||||||||||||   ||   ||||||||    
T  6572550 actaatcgatatgaacctaggatcaatgatttgctcgacaaactaaaatttctcgtagagcaaaaggatgtgttgggattgacaggtagtggaagttgca 6572649  T
Q  249 ctagttatgaaggcgcggttagcccacaatcctcaaaaagatctccaactgcatctttggtggatgaatcttccatacgtggtagagaaggtgaaaaaga 348  Q
     ||||| |||||| || |||||||  ||||||||||||||||| |||||||||||| |||||||| |||||| ||||  ||||||||| ||||| |||||    
T  6572650 gtagttttgaaggtgcagttagccagcaatcctcaaaaagatcgccaactgcatctctggtggataaatcttgcatatatggtagagagggtgagaaaga 6572749  T
Q  349 agaaataattaactatttgctgtcttacaaggacaatgacaacaaagtatcaactatcagcatagttggtttgggtgggatgggaaagaccacccttgct 448  Q
    ||||||||| ||| ||||||| || ||||| ||||| |||||| |||||||||  ||||||||||| ||||||||||||||||| |||||||||||||||    
T  6572750 agaaataatcaaccatttgctttcatacaaagacaacgacaaccaagtatcaataatcagcatagtgggtttgggtgggatggggaagaccacccttgct 6572849  T
Q  449 cagcttgtctacaatga 465  Q
    |||||||||||||||||    
T  6572850 cagcttgtctacaatga 6572866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 6572433 - 6572506
Alignment:
Q  17 gtgaagatttggtttgataatctaaaacatgaggtatatgaagtagatcaattgttggatgagattgatacaaa 90  Q
    |||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6572433 gtgaagatttggcttgatcgtctaaaacatgaggtatatgaagtagatcaattgttggatgagattgctacaaa 6572506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 404 - 462
Target Start/End: Original strand, 6984 - 7042
Alignment:
Q  404 atcagcatagttggtttgggtgggatgggaaagaccacccttgctcagcttgtctacaa 462  Q
    ||||||||||| ||||| || |||||||| || |||||||||||| ||||||| |||||    
T  6984 atcagcatagtgggtttaggagggatggggaaaaccacccttgctaagcttgtgtacaa 7042  T

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