View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20381_low_11 (Length: 499)
Name: NF20381_low_11
Description: NF20381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20381_low_11 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 458; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 18 - 499
Target Start/End: Complemental strand, 7009359 - 7008878
Alignment:
| Q |
18 |
gtgtcgaggaggcgcggctaacggtggtgactgctgcagaggaaatcaaggccatttttcctcaaatactcagcttttgcttctactgattgatggatgc |
117 |
Q |
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| T |
7009359 |
gtgtcgaggaggcgcggctaacagtggtgactgctgcagaggaaatcaaggccatttttcctcaagtactcagcttttgcttctactgattgatggatgc |
7009260 |
T |
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| Q |
118 |
ttcagctcaaacttgctatatatccaatggtgaaatacatatatgactattcatgtattaaaaagtgtgtgatgttgtatagtttgagtagaggaggtga |
217 |
Q |
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| T |
7009259 |
ttcagctcaaacttgctatatatccaatggtgaaatacatatatgactattcatgtattaaaaaatgtgtgatgttgtatagtttgagtagaggaggtga |
7009160 |
T |
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| Q |
218 |
aacttcttatctatttctttatctttgagtaaccttgttcacaaaagtacctatctaaagggtccactctaaatattgatgcaatctataaggttaccta |
317 |
Q |
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| T |
7009159 |
aacttcttatctatttctttatctttgagtaaccttgttcacaaaagtacctatctaaagggtccactctaaatattgatgcaatctataaggttaccta |
7009060 |
T |
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| Q |
318 |
taattaatcatacctcataacggttaaatgcaatttaccaatgggaaatccatgactatatacagcaagttactggcaaaaaataatcaagtgaatcatg |
417 |
Q |
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| T |
7009059 |
taattaatcatacctcataacggttaaatgtaatttaccaatgggaaatccatgactatatacagcaagttactagcaaaaaataatcaagtgaatcatg |
7008960 |
T |
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| Q |
418 |
ttgatattaagattcttgtctatatacctttggattttggaaattcggaaaaaattatgtacttggtagctctacacttggt |
499 |
Q |
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| T |
7008959 |
ttgatattaagattcttgtctatatacctttggattttggaaattctgaaaaaattatgtacttggtagctctacacttggt |
7008878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 202 - 366
Target Start/End: Complemental strand, 7011481 - 7011320
Alignment:
| Q |
202 |
tgagtagaggaggtgaaacttcttatctatttctttatctttgagtaaccttgttcacaaaagtacctatctaaagggtccactctaaatattgatgcaa |
301 |
Q |
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|||||| | |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| || || |||||| |
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| T |
7011481 |
tgagtaaaagaggagaaacttcttatctatttctttatcttgaagtaaccttgttcacaaaagtacctatctaaagggtcccctc--aaagttaatgcaa |
7011384 |
T |
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| Q |
302 |
tctataaggttacctataattaatcatacctcataacggttaaatgcaatttaccaatgggaaat |
366 |
Q |
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| T |
7011383 |
tctaaaagattacctatcattagtcatacctcagaacggctaaatg-actttatcaatgggaaat |
7011320 |
T |
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