View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20381_low_12 (Length: 470)
Name: NF20381_low_12
Description: NF20381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20381_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 11 - 416
Target Start/End: Original strand, 47110791 - 47111196
Alignment:
| Q |
11 |
cagagaatggagtcgattattggatagtaagaaattcatggggtaagagctggggagaatcaggctatgtaagaatggaacgtaatctagcagcaagcgt |
110 |
Q |
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| T |
47110791 |
cagaaaatggagtcgattattggatagtaagaaattcatggggtaagagctggggagaatcaggctatgtaagaatggaacgtaatctagcagcaagcgt |
47110890 |
T |
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| Q |
111 |
ggcaggcaaatgtggaatcgcaatgcagtcttcctatcccataaagaagggccaaaatcccccaaatccaggaccatctcctccttcacctgtgaaccca |
210 |
Q |
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| T |
47110891 |
ggcaggcaaatgtggaatcgtaatgcagtcttcctatcccataaagaagggccaaaatcccccaaatccaggaccatctcctccttcacctgtgaaccca |
47110990 |
T |
|
| Q |
211 |
ccaaacgtttgtagtagatatcacagttgcgcttcaagcactacttgttgttgtgtatttggaattggaaaactttgcttttcatggggatgttgtcctc |
310 |
Q |
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| T |
47110991 |
ccaaacgtttgtagtagatatcacagttgcgcttcaagcactacttgttgttgtgtatttggaattggaaaactttgcttttcatggggatgttgtcctc |
47111090 |
T |
|
| Q |
311 |
ttgaggctgcagtctgctgtaaagatcactcaagttgttgtcctcacaactatcccatttgcaacactcgccaagggacctgtctcagggtaaatgctac |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47111091 |
ttgaggctgcagtctgctgtaaagatcactcaagttgttgtcctcacaactatcccatttgcaacactcgccaagggacctgtctcagggtaaatgctac |
47111190 |
T |
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| Q |
411 |
atataa |
416 |
Q |
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|||||| |
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| T |
47111191 |
atataa |
47111196 |
T |
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