View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20381_low_15 (Length: 427)

Name: NF20381_low_15
Description: NF20381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20381_low_15
NF20381_low_15
[»] chr3 (3 HSPs)
chr3 (27-413)||(7201606-7201991)
chr3 (87-127)||(581172-581212)
chr3 (87-119)||(20844741-20844773)
[»] chr4 (3 HSPs)
chr4 (159-262)||(25844213-25844320)
chr4 (87-128)||(40422002-40422043)
chr4 (87-127)||(25844495-25844535)
[»] scaffold0110 (1 HSPs)
scaffold0110 (95-131)||(31508-31544)
[»] chr8 (2 HSPs)
chr8 (81-129)||(34273248-34273296)
chr8 (81-121)||(12750292-12750332)
[»] chr7 (8 HSPs)
chr7 (85-121)||(5758779-5758815)
chr7 (81-129)||(31726760-31726808)
chr7 (159-201)||(31726662-31726704)
chr7 (94-131)||(35852076-35852113)
chr7 (87-119)||(3361201-3361233)
chr7 (89-129)||(16780881-16780921)
chr7 (87-127)||(22181742-22181782)
chr7 (87-119)||(25683821-25683853)
[»] chr5 (2 HSPs)
chr5 (87-130)||(39333724-39333767)
chr5 (210-254)||(9962806-9962850)
[»] chr2 (1 HSPs)
chr2 (84-121)||(14994746-14994783)
[»] chr1 (1 HSPs)
chr1 (84-121)||(44061406-44061443)


Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 27 - 413
Target Start/End: Original strand, 7201606 - 7201991
Alignment:
Q  27 gggtttgtgtgttgaaaatggatgatttactgggttggctttgtgtgtgttttcaaagagaattgcccttctcccttttgtttttgctcattcccttaat 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7201606 gggtttgtgtgttgaaaatggatgatttactgggttggctttgtgtgtgttttcaaagagaattgcccttctcccttttgtttttgctcattcccttaat 7201705  T
Q  127 tcagctttcagcgagtttacttacgcccacaattttaagataggttcaatcatcttttaagccggttcaaccgattttcaaagactcacgctgaatcaag 226  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7201706 tcagctttcagcgagtttactcatgcccacaattttaagataggttcaatcatcttttaagccggttcaaccgattttcaaagactcacgctgaatcaag 7201805  T
Q  227 ggaatgagtaattttaaaagggggaagaacgattttcttaagcaaaagattgctttcttggagaattagttgaagaaattggnnnnnnnnnncttctttt 326  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||          ||||||||    
T  7201806 ggaatgagtaattttaaaagggggaagaacgattttcttaagcaaaagattgctttcttggagaataagttgaagaaattgg-tttttttttcttctttt 7201904  T
Q  327 ccaatctcacctgccaatccaaaagtgtgtgtgaattttacattcagaaattacctacgaggtatacaattcatttaagtgagaagt 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7201905 ccaatctcacctgccaatccaaaagtgtgtgtgaattttacattcagaaattacctacgaggtatacaattcatttaagtgagaagt 7201991  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 581212 - 581172
Alignment:
Q  87 aattgcccttctcccttttgtttttgctcattcccttaatt 127  Q
    |||||| ||||||||||| ||||||||| ||||||||||||    
T  581212 aattgctcttctccctttcgtttttgcttattcccttaatt 581172  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 119
Target Start/End: Original strand, 20844741 - 20844773
Alignment:
Q  87 aattgcccttctcccttttgtttttgctcattc 119  Q
    |||||| ||||||||||||||||||||||||||    
T  20844741 aattgctcttctcccttttgtttttgctcattc 20844773  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 159 - 262
Target Start/End: Complemental strand, 25844320 - 25844213
Alignment:
Q  159 ttttaagataggttcaatcatcttttaagccggttcaaccgattttcaaag----actcacgctgaatcaagggaatgagtaattttaaaagggggaaga 254  Q
    ||||||||| | |||||||   ||||||||||||||||||||| || ||||    ||||||||||||| |||||| | | |||||||||||||| |||||    
T  25844320 ttttaagattgattcaatcgctttttaagccggttcaaccgatcttaaaagtgccactcacgctgaattaagggatttaataattttaaaagggagaaga 25844221  T
Q  255 acgatttt 262  Q
    || |||||    
T  25844220 acaatttt 25844213  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 87 - 128
Target Start/End: Complemental strand, 40422043 - 40422002
Alignment:
Q  87 aattgcccttctcccttttgtttttgctcattcccttaattc 128  Q
    |||||| ||||||||||| |||||||||||||||||||||||    
T  40422043 aattgctcttctccctttcgtttttgctcattcccttaattc 40422002  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 25844535 - 25844495
Alignment:
Q  87 aattgcccttctcccttttgtttttgctcattcccttaatt 127  Q
    |||||| ||||||||||| ||||||||||||||||||||||    
T  25844535 aattgctcttctccctttagtttttgctcattcccttaatt 25844495  T

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Target: scaffold0110 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 131
Target Start/End: Complemental strand, 31544 - 31508
Alignment:
Q  95 ttctcccttttgtttttgctcattcccttaattcagc 131  Q
    |||||||||||||||||||||||||||||||||||||    
T  31544 ttctcccttttgtttttgctcattcccttaattcagc 31508  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 34273296 - 34273248
Alignment:
Q  81 aaagagaattgcccttctcccttttgtttttgctcattcccttaattca 129  Q
    ||||| |||||| |||||| |||||||||||||||||||||||||||||    
T  34273296 aaagaaaattgctcttctcacttttgtttttgctcattcccttaattca 34273248  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 121
Target Start/End: Complemental strand, 12750332 - 12750292
Alignment:
Q  81 aaagagaattgcccttctcccttttgtttttgctcattccc 121  Q
    |||||||||||| |||||||| | |||||||||||||||||    
T  12750332 aaagagaattgctcttctcccatctgtttttgctcattccc 12750292  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 121
Target Start/End: Original strand, 5758779 - 5758815
Alignment:
Q  85 agaattgcccttctcccttttgtttttgctcattccc 121  Q
    |||||||| ||||||||||||||||||||||||||||    
T  5758779 agaattgctcttctcccttttgtttttgctcattccc 5758815  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 31726808 - 31726760
Alignment:
Q  81 aaagagaattgcccttctcccttttgtttttgctcattcccttaattca 129  Q
    ||||| |||||| ||||||||||||||||||||||||| |||| |||||    
T  31726808 aaagaaaattgctcttctcccttttgtttttgctcatttccttcattca 31726760  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 201
Target Start/End: Complemental strand, 31726704 - 31726662
Alignment:
Q  159 ttttaagataggttcaatcatcttttaagccggttcaaccgat 201  Q
    ||||||| | ||||||||||| |||||||||||||||||||||    
T  31726704 ttttaagttcggttcaatcatattttaagccggttcaaccgat 31726662  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 131
Target Start/End: Complemental strand, 35852113 - 35852076
Alignment:
Q  94 cttctcccttttgtttttgctcattcccttaattcagc 131  Q
    ||||||||||| |||||||||||||||||| |||||||    
T  35852113 cttctccctttcgtttttgctcattcccttcattcagc 35852076  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 119
Target Start/End: Complemental strand, 3361233 - 3361201
Alignment:
Q  87 aattgcccttctcccttttgtttttgctcattc 119  Q
    ||||| |||||||||||||||||||||||||||    
T  3361233 aattgtccttctcccttttgtttttgctcattc 3361201  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 16780921 - 16780881
Alignment:
Q  89 ttgcccttctcccttttgtttttgctcattcccttaattca 129  Q
    |||| ||||||||||| ||||||||||||| ||||||||||    
T  16780921 ttgctcttctccctttcgtttttgctcatttccttaattca 16780881  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 22181782 - 22181742
Alignment:
Q  87 aattgcccttctcccttttgtttttgctcattcccttaatt 127  Q
    ||||||||||||| |||||| |||||||||| |||||||||    
T  22181782 aattgcccttctcacttttgattttgctcatccccttaatt 22181742  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 119
Target Start/End: Complemental strand, 25683853 - 25683821
Alignment:
Q  87 aattgcccttctcccttttgtttttgctcattc 119  Q
    |||||| ||||||||||||||||||||||||||    
T  25683853 aattgctcttctcccttttgtttttgctcattc 25683821  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 130
Target Start/End: Original strand, 39333724 - 39333767
Alignment:
Q  87 aattgcccttctcccttttgtttttgctcattcccttaattcag 130  Q
    |||||| |||||||||||||||| |||||| |||||||||||||    
T  39333724 aattgctcttctcccttttgtttatgctcaatcccttaattcag 39333767  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 254
Target Start/End: Complemental strand, 9962850 - 9962806
Alignment:
Q  210 actcacgctgaatcaagggaatgagtaattttaaaagggggaaga 254  Q
    ||||||||| ||| || ||||||||||||||||||||| ||||||    
T  9962850 actcacgctaaattaacggaatgagtaattttaaaaggaggaaga 9962806  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 121
Target Start/End: Original strand, 14994746 - 14994783
Alignment:
Q  84 gagaattgcccttctcccttttgtttttgctcattccc 121  Q
    ||||||||| |||||||| |||||||||||||||||||    
T  14994746 gagaattgctcttctcccatttgtttttgctcattccc 14994783  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 121
Target Start/End: Complemental strand, 44061443 - 44061406
Alignment:
Q  84 gagaattgcccttctcccttttgtttttgctcattccc 121  Q
    ||||||||| |||||||| |||||||||||||||||||    
T  44061443 gagaattgctcttctcccgtttgtttttgctcattccc 44061406  T

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