View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20381_low_19 (Length: 389)
Name: NF20381_low_19
Description: NF20381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20381_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 19 - 374
Target Start/End: Complemental strand, 33662652 - 33662295
Alignment:
| Q |
19 |
atatccgcagaattgttgctttcattattcaaattaaggtagatatagttgtttaatgtgccccnnnnnnn--gagatagttgtttatcattttttaatt |
116 |
Q |
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| T |
33662652 |
atatccgcagaattgttgctttcattattcaaattaaggtagatatagttgtttaatgtaccccaaaaaaaaagagatagttgtttatcattttttaatt |
33662553 |
T |
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| Q |
117 |
aatgagttgtttaaactttaacttcaaacattttagcattttatcgttagaaattcatctcttatagataaattagtggagtgtccgagtttaaacctcg |
216 |
Q |
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| T |
33662552 |
aatgagttgtttaaactttaacttcaaacattttagcattttatcgttagaaattcatctcttatagataaattagtggagtgtccgagttcaaacctcg |
33662453 |
T |
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| Q |
217 |
actatacatattacaatgaattgtccctatcaattagttaatatcacatcgacgaatgtcgaattttattgacggcaaagaagttccggaaaaaccatat |
316 |
Q |
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| T |
33662452 |
actatacatattacaatgaattgtccctatcaattagttaatatcacatcgacgaatgtcgaattttattgacggcaaagaagttccggaaaaaccatat |
33662353 |
T |
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| Q |
317 |
tcttttcttcctagaacaaattaaaatcacaaccatatgatactaaattcttattcat |
374 |
Q |
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| T |
33662352 |
tcttttcttcctagaacaaattaaaatcacaaccatatgatactaaattcttattcat |
33662295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 74
Target Start/End: Complemental strand, 33672130 - 33672083
Alignment:
| Q |
27 |
agaattgttgctttcattattcaaattaaggtagatatagttgtttaa |
74 |
Q |
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||||||||| |||||||||||| | ||||||||||||||||||||||| |
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| T |
33672130 |
agaattgtttctttcattattccatttaaggtagatatagttgtttaa |
33672083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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