View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20381_low_2 (Length: 705)

Name: NF20381_low_2
Description: NF20381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20381_low_2
NF20381_low_2
[»] chr2 (3 HSPs)
chr2 (27-67)||(18179064-18179104)
chr2 (375-410)||(24011886-24011921)
chr2 (34-67)||(43529773-43529806)
[»] chr1 (6 HSPs)
chr1 (374-439)||(46937604-46937671)
chr1 (34-68)||(19462681-19462715)
chr1 (27-56)||(10199334-10199363)
chr1 (27-56)||(50644181-50644210)
chr1 (28-68)||(26866429-26866469)
chr1 (37-73)||(40751031-40751067)
[»] chr8 (1 HSPs)
chr8 (375-439)||(18899949-18900015)
[»] chr7 (6 HSPs)
chr7 (27-66)||(34036032-34036071)
chr7 (19-56)||(8427120-8427157)
chr7 (27-64)||(19302481-19302518)
chr7 (27-68)||(24975991-24976032)
chr7 (377-413)||(38921333-38921369)
chr7 (27-67)||(43854956-43854996)
[»] chr5 (2 HSPs)
chr5 (355-418)||(9634880-9634943)
chr5 (32-68)||(14331486-14331522)
[»] chr4 (5 HSPs)
chr4 (27-68)||(27043744-27043785)
chr4 (31-64)||(39691067-39691100)
chr4 (32-68)||(679411-679447)
chr4 (32-68)||(1133048-1133084)
chr4 (27-63)||(4449024-4449060)
[»] chr3 (1 HSPs)
chr3 (19-56)||(31403466-31403503)
[»] chr6 (1 HSPs)
chr6 (16-56)||(32205939-32205979)


Alignment Details
Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 18179064 - 18179104
Alignment:
Q  27 atgttagtagataagctcaaataagtcaattcgaacagacc 67  Q
    |||||||||||||||||||||||||||||| | ||||||||    
T  18179064 atgttagtagataagctcaaataagtcaatccaaacagacc 18179104  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 410
Target Start/End: Original strand, 24011886 - 24011921
Alignment:
Q  375 gtttgttcaaattccgctacacaacaatattatagc 410  Q
    |||||||||||||||||||||||||||| |||||||    
T  24011886 gtttgttcaaattccgctacacaacaatgttatagc 24011921  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 67
Target Start/End: Complemental strand, 43529806 - 43529773
Alignment:
Q  34 tagataagctcaaataagtcaattcgaacagacc 67  Q
    ||||||||||||||||||||||||| ||||||||    
T  43529806 tagataagctcaaataagtcaattcaaacagacc 43529773  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 374 - 439
Target Start/End: Complemental strand, 46937671 - 46937604
Alignment:
Q  374 ggtttgttcaaattccgctacacaacaatattatagcgcctctatt--acaacattttgtactaaata 439  Q
    ||||||||||||||||||||  ||||| | |||||||||| |||||  |||| |||||||||||||||    
T  46937671 ggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacaatattttgtactaaata 46937604  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 34 - 68
Target Start/End: Complemental strand, 19462715 - 19462681
Alignment:
Q  34 tagataagctcaaataagtcaattcgaacagaccc 68  Q
    |||||||||| ||||||||||||||||||||||||    
T  19462715 tagataagcttaaataagtcaattcgaacagaccc 19462681  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 56
Target Start/End: Complemental strand, 10199363 - 10199334
Alignment:
Q  27 atgttagtagataagctcaaataagtcaat 56  Q
    ||||||||||||||||||||||||||||||    
T  10199363 atgttagtagataagctcaaataagtcaat 10199334  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 56
Target Start/End: Complemental strand, 50644210 - 50644181
Alignment:
Q  27 atgttagtagataagctcaaataagtcaat 56  Q
    ||||||||||||||||||||||||||||||    
T  50644210 atgttagtagataagctcaaataagtcaat 50644181  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 26866429 - 26866469
Alignment:
Q  28 tgttagtagataagctcaaataagtcaattcgaacagaccc 68  Q
    |||||||||||||||| |||||||||||| | |||||||||    
T  26866429 tgttagtagataagctgaaataagtcaatccaaacagaccc 26866469  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 40751067 - 40751031
Alignment:
Q  37 ataagctcaaataagtcaattcgaacagacccgaaat 73  Q
    |||||||||||||||||||||| ||||||||| ||||    
T  40751067 ataagctcaaataagtcaattcaaacagaccctaaat 40751031  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 439
Target Start/End: Original strand, 18899949 - 18900015
Alignment:
Q  375 gtttgttcaaattccgctacacaacaatattatagcgcctctatt--acaacattttgtactaaata 439  Q
    |||||||||||||||||||||||||| |  ||||  |||||||||  ||||||||||||| ||||||    
T  18899949 gtttgttcaaattccgctacacaacagtgctatattgcctctatttgacaacattttgtaataaata 18900015  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 66
Target Start/End: Original strand, 34036032 - 34036071
Alignment:
Q  27 atgttagtagataagctcaaataagtcaattcgaacagac 66  Q
    |||| ||||||||||||||||||||||||||| |||||||    
T  34036032 atgtcagtagataagctcaaataagtcaattcaaacagac 34036071  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 8427120 - 8427157
Alignment:
Q  19 aagtactcatgttagtagataagctcaaataagtcaat 56  Q
    ||||||| |||||||||||||||||||||||| |||||    
T  8427120 aagtacttatgttagtagataagctcaaataaatcaat 8427157  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 19302518 - 19302481
Alignment:
Q  27 atgttagtagataagctcaaataagtcaattcgaacag 64  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  19302518 atgtcagtagataagctcaaataagtcaattcaaacag 19302481  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 68
Target Start/End: Original strand, 24975991 - 24976032
Alignment:
Q  27 atgttagtagataagctcaaataagtcaattcgaacagaccc 68  Q
    |||||||||||||||||||||| ||||||| | |||||||||    
T  24975991 atgttagtagataagctcaaattagtcaatccaaacagaccc 24976032  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 377 - 413
Target Start/End: Complemental strand, 38921369 - 38921333
Alignment:
Q  377 ttgttcaaattccgctacacaacaatattatagcgcc 413  Q
    ||||||||||||||||||||||||||  |||||||||    
T  38921369 ttgttcaaattccgctacacaacaatgctatagcgcc 38921333  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 27 - 67
Target Start/End: Complemental strand, 43854996 - 43854956
Alignment:
Q  27 atgttagtagataagctcaaataagtcaattcgaacagacc 67  Q
    ||||||||||||||| ||||||||| |||||| ||||||||    
T  43854996 atgttagtagataagttcaaataagccaattcaaacagacc 43854956  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 355 - 418
Target Start/End: Original strand, 9634880 - 9634943
Alignment:
Q  355 gcagattacagaagatggaggtttgttcaaattccgctacacaacaatattatagcgcctctat 418  Q
    ||||||||||||| || | ||||||||||||||||||||| ||||| |  ||||||||| ||||    
T  9634880 gcagattacagaaaatagcggtttgttcaaattccgctacgcaacattgctatagcgccgctat 9634943  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 14331486 - 14331522
Alignment:
Q  32 agtagataagctcaaataagtcaattcgaacagaccc 68  Q
    ||||||||||||||||||||||||| | |||||||||    
T  14331486 agtagataagctcaaataagtcaatccaaacagaccc 14331522  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 27043785 - 27043744
Alignment:
Q  27 atgttagtagataagctcaaataagtcaattcgaacagaccc 68  Q
    |||| ||||||||||||||||||||||||| | |||||||||    
T  27043785 atgtcagtagataagctcaaataagtcaatccaaacagaccc 27043744  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 64
Target Start/End: Complemental strand, 39691100 - 39691067
Alignment:
Q  31 tagtagataagctcaaataagtcaattcgaacag 64  Q
    |||||||||||||||||||||||||||| |||||    
T  39691100 tagtagataagctcaaataagtcaattcaaacag 39691067  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 679411 - 679447
Alignment:
Q  32 agtagataagctcaaataagtcaattcgaacagaccc 68  Q
    ||||||||| ||||||||||||||||| |||||||||    
T  679411 agtagataaactcaaataagtcaattcaaacagaccc 679447  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 1133048 - 1133084
Alignment:
Q  32 agtagataagctcaaataagtcaattcgaacagaccc 68  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  1133048 agtagataagctcaaataagtcaattcaaacacaccc 1133084  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 4449060 - 4449024
Alignment:
Q  27 atgttagtagataagctcaaataagtcaattcgaaca 63  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  4449060 atgttagtagataagctcaaataaggcaattcaaaca 4449024  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 31403466 - 31403503
Alignment:
Q  19 aagtactcatgttagtagataagctcaaataagtcaat 56  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  31403466 aagtacttatgttagtagataagctcaagtaagtcaat 31403503  T

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Target: chr6 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 32205979 - 32205939
Alignment:
Q  16 tataagtactcatgttagtagataagctcaaataagtcaat 56  Q
    |||||||||| ||| ||||||||||| ||||||||||||||    
T  32205979 tataagtacttatgctagtagataaggtcaaataagtcaat 32205939  T

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