View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20381_low_21 (Length: 351)
Name: NF20381_low_21
Description: NF20381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20381_low_21 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 43358105 - 43357761
Alignment:
| Q |
1 |
aacagcagccactatatgttatgtgtac----------acacgcaaagtctgaacagtaaatacccactcgtgcttggccacttaccaaattaaacgtgc |
90 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
43358105 |
aacagcagccactatatgttatgtgtacacactactacacacgcaaagtctgaacagtaaatacccactcgtgcttggcgacttaccaaattaaacgtgc |
43358006 |
T |
|
| Q |
91 |
taaagacaatgaaaccaaatttg-nnnnnnnnnntaactgtgtatggacaagtacaagacatatgagatgagatattccaaatattgttttcatgtggaa |
189 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43358005 |
taaagacaatgaaaccaaatttgaaaaaaaaaaataactgtgtatggacaagtacaagacatatgagatgagatattccaaatattgttttcatgtggaa |
43357906 |
T |
|
| Q |
190 |
gctgtgtcattctcattcattccttttcctaccctttttctaaaatcaaacccttcttgtcacaattttattctgctttttcttagtagtaattgttcag |
289 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
43357905 |
gttgtgtcattctcattcattccttttcctaccctttttctaaaatcaaaccc-tcttgtcacaattttatcctgctttttcttagtagtaattgttcat |
43357807 |
T |
|
| Q |
290 |
gaggagacttttggctgtcacatatattaaagtatgcctcgtttta |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
43357806 |
gaggagacttttggctgtcacatatattaaagtatgtctcgtttta |
43357761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University