View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20381_low_25 (Length: 333)
Name: NF20381_low_25
Description: NF20381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20381_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 20 - 303
Target Start/End: Complemental strand, 965549 - 965266
Alignment:
| Q |
20 |
catgtatgtcttgattcttttgtatatttgagtttggatcatattttatcgaatattatgaaaagatctcatcaatgaatcgtctaacttgatcagtccc |
119 |
Q |
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| T |
965549 |
catgtatgtcttgattcttttgtatatttggatttggatcatattttatcgaatattacgaaaagatctcatcaatgaatcgtctaacttgatcggtccc |
965450 |
T |
|
| Q |
120 |
ttcaaactatattaactaaatatagagaacctggttgaaaaatctctatttaaccattgcaacttttcaaatttatattttataaaattttcttacaatt |
219 |
Q |
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||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
965449 |
ttcaaactatactaactaaatatagaaaacctgattgaaaaatctctatttaaccattgcaacttttcaaatttatattttagaaaattttcttacaatt |
965350 |
T |
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| Q |
220 |
atgggaaacatgctcatgcataaataatagggtgtttcgaattaaagaagttgaaaccacaagaccgacttcaattgatagaat |
303 |
Q |
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| T |
965349 |
atgggaaacatgctcatgcataaatagtagggtgtttcgaattaaagaagttgaaaccacaagaccgacttcaattgatagaat |
965266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 149
Target Start/End: Complemental strand, 21305255 - 21305185
Alignment:
| Q |
79 |
gaaaagatctcatcaatgaatcgtctaacttgatcagtcccttcaaactatattaactaaatatagagaac |
149 |
Q |
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| T |
21305255 |
gaaaagatatcaacaaggaatggtctaactcgatcagtctcttcgaactatattgaccaaatatagagaac |
21305185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 44728883 - 44728847
Alignment:
| Q |
164 |
tctatttaaccattgcaacttttcaaatttatatttt |
200 |
Q |
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|||||| |||||||||||||||||||||||||||||| |
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| T |
44728883 |
tctattcaaccattgcaacttttcaaatttatatttt |
44728847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 201
Target Start/End: Complemental strand, 1840448 - 1840416
Alignment:
| Q |
169 |
ttaaccattgcaacttttcaaatttatatttta |
201 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
1840448 |
ttaaccattgcaacttttcaaatttatatttta |
1840416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 154
Target Start/End: Original strand, 35432944 - 35433034
Alignment:
| Q |
64 |
tttatcgaatattatgaaaagatctcatcaatgaatcgtctaacttgatcagtcccttcaaactatattaactaaatatagagaacctggt |
154 |
Q |
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| T |
35432944 |
tttatggaatatcatgaaaagacatcaccaaggaagcgtctaacttgatcggttgattcaaactatacttaccaaatatagagaacatggt |
35433034 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 200
Target Start/End: Original strand, 8433158 - 8433192
Alignment:
| Q |
166 |
tatttaaccattgcaacttttcaaatttatatttt |
200 |
Q |
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|
|||||||||||||||||||||||| |||||||||| |
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|
| T |
8433158 |
tatttaaccattgcaacttttcaagtttatatttt |
8433192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 191
Target Start/End: Original strand, 50914723 - 50914752
Alignment:
| Q |
162 |
tctctatttaaccattgcaacttttcaaat |
191 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
50914723 |
tctctatttaaccattgcaacttttcaaat |
50914752 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 199
Target Start/End: Complemental strand, 12634296 - 12634254
Alignment:
| Q |
157 |
aaaaatctctatttaaccattgcaacttttcaaatttatattt |
199 |
Q |
| |
|
|||| ||||||||||| |||||||| ||||||||||||||||| |
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| T |
12634296 |
aaaagtctctatttaatcattgcaatttttcaaatttatattt |
12634254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 200
Target Start/End: Original strand, 42263763 - 42263801
Alignment:
| Q |
162 |
tctctatttaaccattgcaacttttcaaatttatatttt |
200 |
Q |
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|||||||| || ||||||||||||||||||||||||||| |
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| T |
42263763 |
tctctattcaatcattgcaacttttcaaatttatatttt |
42263801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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