View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20381_low_26 (Length: 330)
Name: NF20381_low_26
Description: NF20381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20381_low_26 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 5 - 330
Target Start/End: Original strand, 8152591 - 8152920
Alignment:
| Q |
5 |
atgaagacctgaaatagttacaagaaaatcacc-gtttcatatgcaggagtgccactagcagtagcttcaataccagtagcaggaagaattacgtggccc |
103 |
Q |
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| T |
8152591 |
atgaagacctgaaatagttggaagaaaatcaccagtttcatatgcaggagtgccactagcagtagcttcaataccagtagcaggaagaattacgtggccc |
8152690 |
T |
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| Q |
104 |
tcaactcattatgaagctagnnnnnnnnttagatgttcttcaatttgattatgg----ataacttttaacaatttaactatgacaccttaagtgactata |
199 |
Q |
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| T |
8152691 |
tcaactcattatgaagctagaaaaaaaattacatgttcttcaatttgattatggatatataacttttaacaatttaactatgaca-cttaagtgattata |
8152789 |
T |
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| Q |
200 |
cattattgtccttgattattatagttccttttaatctttaannnnnnnngtttaaatgcttgaaatagaattgaatggaaataagctttgattactttat |
299 |
Q |
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| T |
8152790 |
cattattgtccttgattattatagttccttttaatctataattttttttgtttaaatgcttgaaatagaattgaatggaaataagctttgattactttat |
8152889 |
T |
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| Q |
300 |
ggaggtttaattatactgcttatgatgattt |
330 |
Q |
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| T |
8152890 |
ggaggtttaattatactgcttatgatgattt |
8152920 |
T |
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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 92
Target Start/End: Complemental strand, 39615119 - 39615031
Alignment:
| Q |
5 |
atgaagacctgaaatagttacaagaaaatcacc-gtttcatatgcaggagtgccactagcagtagcttcaataccagtagcaggaagaa |
92 |
Q |
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| T |
39615119 |
atgaaaacctgaaatagttgcaagaaaatcaccagtttcatatgcaggagtgccactagctgaaacttcaatagcagtagaaggaagaa |
39615031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 162 - 240
Target Start/End: Complemental strand, 39615005 - 39614927
Alignment:
| Q |
162 |
cttttaacaatttaactatgacaccttaagtgactatacattattgtccttgattattatagttccttttaatctttaa |
240 |
Q |
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| T |
39615005 |
cttttaacaatttgactatgacaccttaggtgactctacattattttccttgatcatgttggtcctttttaatctttaa |
39614927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 317
Target Start/End: Original strand, 14664781 - 14664843
Alignment:
| Q |
256 |
tgcttgaaatagaattgaatggaaataagctt-tgattactttatggaggtttaattatactg |
317 |
Q |
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| T |
14664781 |
tgcttgaaatataattgaatggtaattagcttctgattgctttatggaggttgaattctactg |
14664843 |
T |
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