View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20381_low_27 (Length: 325)

Name: NF20381_low_27
Description: NF20381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20381_low_27
NF20381_low_27
[»] chr7 (1 HSPs)
chr7 (1-303)||(11033950-11034256)
[»] chr5 (2 HSPs)
chr5 (1-186)||(18667792-18667989)
chr5 (215-303)||(18667986-18668074)
[»] chr1 (2 HSPs)
chr1 (1-186)||(15076792-15076991)
chr1 (215-290)||(15076720-15076795)
[»] chr3 (7 HSPs)
chr3 (160-277)||(21929001-21929118)
chr3 (201-303)||(21940984-21941086)
chr3 (1-82)||(21929191-21929273)
chr3 (91-200)||(21941419-21941531)
chr3 (37-200)||(22182424-22182600)
chr3 (14-60)||(22122338-22122384)
chr3 (201-287)||(22040259-22040344)


Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 11034256 - 11033950
Alignment:
Q  1 taagctgcaaaaatgcatcactgaagtaacagtggctaatgtaaccaaccaataccacttaatgaatcactaaatttttgccaggatactatctagtcat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11034256 taagctgcaaaaatgcatcactgaagtaacagtggctaatgtaaccaaccaataccacttaatgaatcactaaatttttgccaggatactatctagtcat 11034157  T
Q  101 ttgtagataaacatgttaataccaatactatccaacaaatctataaataaagctatgaa----ccatgatgttaaatttgaactgttcaatatctcatga 196  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    ||||||||||||||||||||||||||||||||| |||    
T  11034156 ttgtagataaacatgttaataccaatactatccaacacatctataaataaagctatgaacactccatgatgttaaatttgaactgttcaatatctcgtga 11034057  T
Q  197 atcatttactgtgcaatatcaagttaaatatttatccatagcttaaagggttgattctaatatcaactttatcctgctacatgaatcatgacggtaaaag 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11034056 atcatttactgtgcaatatcaagttaaatatttatccatagcttaaagggttgattctaatatcaactttatcctgctacatgaatcatgacggtaaaag 11033957  T
Q  297 caatact 303  Q
    |||||||    
T  11033956 caatact 11033950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 104; Significance: 8e-52; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 18667792 - 18667989
Alignment:
Q  1 taagctgcaaaaatgcatcactgaagtaacagtggctaatgtaaccaaccaataccacttaatgaatcactaaatttttgccaggatact--------at 92  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||| ||||  ||||        ||    
T  18667792 taagctgcacaaatgcatcactgaagtaacagtggctaatgtaaccaaccaataccacttaatgaatcacaaaaaatttcccagcctactatcactaaat 18667891  T
Q  93 ctagtcatttgtagataaacatgttaataccaatactatccaacaaatctataaataaagctatgaa----ccatgatgttaaatttgaactgttcaa 186  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||| ||||||| |||||||||||||    |||||||||||||||||||| ||||||    
T  18667892 ctagtcatttgtagatacacatgttaatagcaatactatccaacacatctatagataaagctatgaacactccatgatgttaaatttgaaccgttcaa 18667989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 215 - 303
Target Start/End: Original strand, 18667986 - 18668074
Alignment:
Q  215 tcaagttaaatatttatccatagcttaaagggttgattctaatatcaactttatcctgctacatgaatcatgacggtaaaagcaatact 303  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18667986 tcaagttaaatatttatccatagcttaaagggtcgattctaatatcaactttatcctgctacatgaatcatgacggtaaaagcaatact 18668074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 7e-49; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 15076991 - 15076792
Alignment:
Q  1 taagctgcaaaaatgcatcactgaagtaacagtggctaatgtaaccaaccaataccacttaatgaatcactaaatttttg--ccaggatact-------- 90  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||  ||||  ||||            
T  15076991 taagctgcacaaatgcatcactgaagtaacagtggctaatgtaaccaaccaataccacttcatgaatcacaaaatttttgccccagcctactatcactaa 15076892  T
Q  91 atctagtcatttgtagataaacatgttaataccaatactatccaacaaatctataaataaagctatgaa----ccatgatgttaaatttgaactgttcaa 186  Q
    ||||| ||||||||||||| ||||||||||| ||||||||||||||| ||||||| |||||||||||||    |||||||||||||||||||| ||||||    
T  15076891 atctattcatttgtagatacacatgttaatagcaatactatccaacacatctatagataaagctatgaacactccatgatgttaaatttgaaccgttcaa 15076792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 215 - 290
Target Start/End: Complemental strand, 15076795 - 15076720
Alignment:
Q  215 tcaagttaaatatttatccatagcttaaagggttgattctaatatcaactttatcctgctacatgaatcatgacgg 290  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  15076795 tcaagttaaatatttatccatagcttaaagggtcgattctaatatcaactttatcctgctacatgaatcatgacgg 15076720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 160 - 277
Target Start/End: Complemental strand, 21929118 - 21929001
Alignment:
Q  160 ccatgatgttaaatttgaactgttcaatatctcatgaatcatttactgtgcaatatcaagttaaatatttatccatagcttaaagggttgattctaatat 259  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||    
T  21929118 ccatgatgttaaatttaaaccgttcaatatctcatgaatcatttactgtgcagtatcaggttaaatatttatccatagtttaaagggttgattctaatat 21929019  T
Q  260 caactttatcctgctaca 277  Q
    | ||||||||||| ||||    
T  21929018 ccactttatcctgttaca 21929001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 201 - 303
Target Start/End: Complemental strand, 21941086 - 21940984
Alignment:
Q  201 tttactgtgcaatatcaagttaaatatttatccatagcttaaagggttgattctaatatcaactttatcctgctacatgaatcatgacggtaaaagcaat 300  Q
    ||||||||||| ||| ||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||| |||||||||||| |||| |||||||    
T  21941086 tttactgtgcagtataaagttaaatatttatccataggtgaaagggttgattctaatatcaacttaatcctgctgcatgaatcatgatggtagaagcaat 21940987  T
Q  301 act 303  Q
    |||    
T  21940986 act 21940984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 21929273 - 21929191
Alignment:
Q  1 taagctgcaaaaatgcatcactgaagtaa-cagtggctaatgtaaccaaccaataccacttaatgaatcactaaatttttgcc 82  Q
    ||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  21929273 taagctgcacaaatgcatcactgaagtaaacagtggccaatgtaaccaaccaataccacttaatgaatcactaaatttttgcc 21929191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 91 - 200
Target Start/End: Complemental strand, 21941531 - 21941419
Alignment:
Q  91 atctagtcatttgtagataaacatgttaataccaatactatccaacaaatctataaataaagctatgaac----catgatgttaaatttgaactgttcaa 186  Q
    |||||||||||||||||||| ||||||||||  |||||| ||||||| ||||||| ||||| ||||||||    |||||||||||||||||||||||| |    
T  21941531 atctagtcatttgtagataa-catgttaatagtaatactgtccaacacatctatagataaatctatgaacactccatgatgttaaatttgaactgttcta 21941433  T
Q  187 tatctcatgaatca 200  Q
    ||||||||| ||||    
T  21941432 tatctcatgcatca 21941419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 200
Target Start/End: Complemental strand, 22182600 - 22182424
Alignment:
Q  37 taatgtaaccaaccaataccacttaatgaatcactaaatttttgcc--aggatact--------atctagtcatttgtagataaacatgttaataccaat 126  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||  ||  ||||        |||||||||||||||||||| ||||||||||  |||    
T  22182600 taatgcaaccaaccaataccagttaatgaatcactaaatttttgcctcagcctactgtcactaaatctagtcatttgtagataa-catgttaatagtaat 22182502  T
Q  127 actatccaacaaatctataaataaagctatgaac----catgatgttaaatttgaactgttcaatatctcatgaatca 200  Q
    | | ||||||| ||||||| |||||||||| |||    ||||||||| |||||||||||||| |||||| ||| ||||    
T  22182501 attgtccaacacatctatagataaagctataaacactccatgatgtttaatttgaactgttctatatcttatgcatca 22182424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 22122384 - 22122338
Alignment:
Q  14 tgcatcactgaagtaacagtggctaatgtaaccaaccaataccactt 60  Q
    |||||||||||||||||||||| |||||| ||||| |||||||||||    
T  22122384 tgcatcactgaagtaacagtggttaatgtcaccaatcaataccactt 22122338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 287
Target Start/End: Complemental strand, 22040344 - 22040259
Alignment:
Q  201 tttactgtgcaatatcaagttaaatatttatccatagcttaaagggttgattctaatatcaactttatcctgctacatgaatcatga 287  Q
    ||||||||||| |||||| |||||||| |||||||||| | |||  | ||||||||||| ||||| |||||| | | ||||||||||    
T  22040344 tttactgtgcagtatcaaattaaatatctatccatagcgt-aagaatcgattctaatataaacttaatcctgttgcgtgaatcatga 22040259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University