View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20381_low_28 (Length: 321)
Name: NF20381_low_28
Description: NF20381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20381_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 19 - 311
Target Start/End: Original strand, 13064897 - 13065189
Alignment:
| Q |
19 |
tgaacatctgctactgcttctagtgttgtagtgccctccatggaataaaaaggttctgttcgtgcaggattctttgatacgccaaagttttgtttggtac |
118 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13064897 |
tgaacatctgccactgcttctagtgttgtagtgccctccatggaataaaaaggttctgttcgtgcaggattctttgatacgccaaagttttgtttggtac |
13064996 |
T |
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| Q |
119 |
cggtaccctgtagtcaaaatttaaatgatcaaattatataagaaaaagttatatgacattaaatgattgaatgttagataaaaactctatgctaccggag |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
13064997 |
cggtaccctgtagtcaaaatttaaatgatcaaattatataagaaaaagttatatgacattaaatgattgaatgttagattcaaactctatgctaccggag |
13065096 |
T |
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| Q |
219 |
tgttcacctcttttggttcaactctatctttttctttagaaatgatcgcttctacatgaatgtgcctttccactttcttctcttctacctttg |
311 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13065097 |
tgttcacctcttttggttcaactctatctttttccttagaaatgatcgcttctacatgaatgtgcctttccactttcttctcttctacctttg |
13065189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 19 - 311
Target Start/End: Original strand, 13071651 - 13071943
Alignment:
| Q |
19 |
tgaacatctgctactgcttctagtgttgtagtgccctccatggaataaaaaggttctgttcgtgcaggattctttgatacgccaaagttttgtttggtac |
118 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13071651 |
tgaacatctgccactgcttctagtgttgtagtgccctccatggaataaaaaggttctgttcgtgcaggattctttgatacgccaaagttttgtttggtac |
13071750 |
T |
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| Q |
119 |
cggtaccctgtagtcaaaatttaaatgatcaaattatataagaaaaagttatatgacattaaatgattgaatgttagataaaaactctatgctaccggag |
218 |
Q |
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| T |
13071751 |
cggtaccctgtagtcaaaatttaaatgatcaaattatataagaaaaagttatatgacattaaatgattgaatgttagattcaaactctatgctaccggag |
13071850 |
T |
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| Q |
219 |
tgttcacctcttttggttcaactctatctttttctttagaaatgatcgcttctacatgaatgtgcctttccactttcttctcttctacctttg |
311 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13071851 |
tgttcacctcttttggttcaactctatctttttccttagaaatgatcgcttctacatgaatgtgcctttccactttcttctcttctacctttg |
13071943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 19 - 311
Target Start/End: Original strand, 13075855 - 13076147
Alignment:
| Q |
19 |
tgaacatctgctactgcttctagtgttgtagtgccctccatggaataaaaaggttctgttcgtgcaggattctttgatacgccaaagttttgtttggtac |
118 |
Q |
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|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13075855 |
tgaacatctgccactgcttctagtgttgtagtgccctccatggaataaaaaggttctgttcgtgcaggattctttgatacgccaaagttttgtttggtac |
13075954 |
T |
|
| Q |
119 |
cggtaccctgtagtcaaaatttaaatgatcaaattatataagaaaaagttatatgacattaaatgattgaatgttagataaaaactctatgctaccggag |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
13075955 |
cggtaccctgtagtcaaaatttaaatgatcaaattatataagaaaaagttatatgacattaaatgattgaatgttagattcaaactctatgctaccggag |
13076054 |
T |
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| Q |
219 |
tgttcacctcttttggttcaactctatctttttctttagaaatgatcgcttctacatgaatgtgcctttccactttcttctcttctacctttg |
311 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13076055 |
tgttcacctcttttggttcaactctatctttttccttagaaatgatcgcttctacatgaatgtgcctttccactttcttctcttctacctttg |
13076147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 139
Target Start/End: Original strand, 13072523 - 13072558
Alignment:
| Q |
104 |
agttttgtttggtaccggtaccctgtagtcaaaatt |
139 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
13072523 |
agttttgtttggtaccggtaccctgtagtcaaaatt |
13072558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 139
Target Start/End: Original strand, 13076727 - 13076762
Alignment:
| Q |
104 |
agttttgtttggtaccggtaccctgtagtcaaaatt |
139 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
13076727 |
agttttgtttggtaccggtaccctgtagtcaaaatt |
13076762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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