View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20381_low_32 (Length: 297)
Name: NF20381_low_32
Description: NF20381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20381_low_32 |
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Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 17 - 276
Target Start/End: Original strand, 24197953 - 24198213
Alignment:
| Q |
17 |
aacagcttgtttaattcatcattcacgcatcagtttttgtaattggtgatgaatattcccttaaacacatcaaaacattgttattt-catcatcacagtc |
115 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||| |
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| T |
24197953 |
aacagcttgtttaattcatcattcacgcatcaatttttgtaattggtgatgaatattcccttaaacacatcaaaacattgttattttcttcatcactgtc |
24198052 |
T |
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| Q |
116 |
aaaatcaattgttacggttgagaagacatcaaacagtagtcgcggttgagaagaagaaactaatttatttcaaaagatgagaagaacaaactaatttatt |
215 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24198053 |
aaaatcaattgctacggttgagaagacatcaaacagtagtcgcggttgagaagaagaaactaatttatttcaaaagatgagaagaacaaactaatttatt |
24198152 |
T |
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| Q |
216 |
ttgagtggtggttcagcggtgacagcgatgaagacatcaaacaacaacgatgacggcgaca |
276 |
Q |
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| T |
24198153 |
ttgagtggtggttcagcggtgacagcgatgaagacatcaaacaacaacgatgacggcgaca |
24198213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 17 - 276
Target Start/End: Original strand, 43449737 - 43449997
Alignment:
| Q |
17 |
aacagcttgtttaattcatcattcacgcatcagtttttgtaattggtgatgaatattcccttaaacacatcaaaacattgttattt-catcatcacagtc |
115 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||| |
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| T |
43449737 |
aacagcttgtttaattcatcattcacgcatcaatttttgtaattggtgatgaatattcccttaaacacatcaaaacattgttattttcttcatcattgtc |
43449836 |
T |
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| Q |
116 |
aaaatcaattgttacggttgagaagacatcaaacagtagtcgcggttgagaagaagaaactaatttatttcaaaagatgagaagaacaaactaatttatt |
215 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43449837 |
aaaatcaattgctacggttgagaagacatcaaacagtagtcgcggttgagaagaataaactaatttatttcaaaagatgagaagaacaaactaatttatt |
43449936 |
T |
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| Q |
216 |
ttgagtggtggttcagcggtgacagcgatgaagacatcaaacaacaacgatgacggcgaca |
276 |
Q |
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||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
43449937 |
ttgagcggtggttcagcggtgacagcgatgaagacattaaacaacaacgatgacggcgaca |
43449997 |
T |
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