View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20381_low_33 (Length: 295)
Name: NF20381_low_33
Description: NF20381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20381_low_33 |
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| [»] scaffold0636 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 13 - 279
Target Start/End: Original strand, 33137735 - 33138001
Alignment:
| Q |
13 |
gaatatcacaaaaattcttatgagttaatgttttaatgataacaaacttaattaaacataagatcaa-gatgattcttatatgttttggtttcttacaag |
111 |
Q |
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| T |
33137735 |
gaatatcacaaaaatccttatgagttaatgttttaatgataacaaacttaattaaacataagatcaaagatggttcttatatgttttggtttcttacaag |
33137834 |
T |
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| Q |
112 |
tttctttgagtgttctttataacataacttgagagttttgcatctctatattaaaattcatttatagtaaacatattttgtcctgcattggtgcttatat |
211 |
Q |
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| T |
33137835 |
tttctttgagtgttctttataacataactggagagttttgcatctctatattaaaattcatttatagtaaacatattttgttttgcattggtgcttatat |
33137934 |
T |
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| Q |
212 |
atagaacagttatggtggaatgcgaaaaacttcaatcttcatgtttagatacttgtgttgggatttct |
279 |
Q |
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| T |
33137935 |
atagaacaattatggtgggatacgaaaaacttcaatc-tcatgtttagatacttgtgttgggatttct |
33138001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 146 - 278
Target Start/End: Original strand, 33143483 - 33143614
Alignment:
| Q |
146 |
gttttgcatctctatattaaaattcatttatagtaaacatattttgtcctgcattggtgcttatatatagaacagttatggtggaatgcgaaaaacttca |
245 |
Q |
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| T |
33143483 |
gttttgcatctctatattaaaatttatttatagtaaatatattttgtctcgcattgatacttatatatagaaaaattatgatgtaataagaaaaacttca |
33143582 |
T |
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| Q |
246 |
atcttcatgtttagatacttgtgttgggatttc |
278 |
Q |
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| T |
33143583 |
atc-tcatatttagatatttgtggtggaatttc |
33143614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 35 - 130
Target Start/End: Complemental strand, 16174200 - 16174104
Alignment:
| Q |
35 |
agttaatgttttaatgataacaaacttaattaaacataa-gatcaagatgattcttatatgttttggtttcttacaagtttctttgagtgttcttta |
130 |
Q |
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| T |
16174200 |
agttgatgttttaatgataaaaaacttaattgaacataaagatcaaaatgattatgatatgtgttgatttctaacaagtttctttgagtgttcttta |
16174104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 129
Target Start/End: Complemental strand, 34483540 - 34483445
Alignment:
| Q |
35 |
agttaatgttttaatgataacaaacttaattaaacata-agatcaagatgattcttatatgttttggtttcttacaagtttctttgagtgttcttt |
129 |
Q |
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| T |
34483540 |
agttgatgttttaatgacaacaaacttaattgaacatagacatgaaaatgattctaatatatgttattttctaacaagtttctttgagtgttcttt |
34483445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0636 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0636
Description:
Target: scaffold0636; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 135
Target Start/End: Original strand, 6354 - 6450
Alignment:
| Q |
40 |
atgttttaatgataacaaacttaattaaacata-agatcaagatgattcttatatgttttggtttcttacaagtttctttgagtgttctttataaca |
135 |
Q |
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| T |
6354 |
atgttttaatgattacaaactcaattgaacaaagaggtcaaattgattttgatatgtgttggtttctaacaagtttatttgagtgttatttagaaca |
6450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 70
Target Start/End: Complemental strand, 25663623 - 25663588
Alignment:
| Q |
35 |
agttaatgttttaatgataacaaacttaattaaaca |
70 |
Q |
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| T |
25663623 |
agttgatgttttaatgataacaaacttaattaaaca |
25663588 |
T |
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