View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20381_low_34 (Length: 294)

Name: NF20381_low_34
Description: NF20381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20381_low_34
NF20381_low_34
[»] chr7 (8 HSPs)
chr7 (15-294)||(42246242-42246521)
chr7 (208-294)||(34130368-34130454)
chr7 (208-294)||(47165283-47165369)
chr7 (208-274)||(47172941-47173007)
chr7 (208-294)||(6913067-6913153)
chr7 (208-294)||(9227949-9228035)
chr7 (208-294)||(47575044-47575130)
chr7 (208-264)||(41057378-41057434)
[»] scaffold0006 (2 HSPs)
scaffold0006 (208-294)||(66350-66436)
scaffold0006 (208-292)||(153893-153977)
[»] chr4 (8 HSPs)
chr4 (208-294)||(1942964-1943050)
chr4 (208-294)||(41984960-41985046)
chr4 (208-294)||(47721777-47721863)
chr4 (208-294)||(742012-742098)
chr4 (208-294)||(15519317-15519403)
chr4 (208-294)||(15650826-15650912)
chr4 (221-294)||(16891521-16891594)
chr4 (208-294)||(19589313-19589401)
[»] chr3 (12 HSPs)
chr3 (208-294)||(8240457-8240543)
chr3 (208-294)||(54794678-54794764)
chr3 (208-294)||(52463645-52463731)
chr3 (208-292)||(16494326-16494410)
chr3 (208-294)||(15315605-15315691)
chr3 (208-294)||(26036149-26036235)
chr3 (208-294)||(35435421-35435507)
chr3 (208-294)||(36169184-36169270)
chr3 (208-294)||(12169660-12169746)
chr3 (208-294)||(39798049-39798135)
chr3 (208-294)||(5253961-5254047)
chr3 (226-294)||(11382313-11382380)
[»] chr1 (7 HSPs)
chr1 (208-294)||(18095268-18095354)
chr1 (208-294)||(49224738-49224824)
chr1 (208-292)||(13664128-13664212)
chr1 (208-292)||(28567430-28567514)
chr1 (208-294)||(18110176-18110262)
chr1 (208-294)||(43256259-43256345)
chr1 (208-294)||(50396673-50396759)
[»] chr5 (10 HSPs)
chr5 (211-294)||(18039864-18039947)
chr5 (208-294)||(7863865-7863951)
chr5 (208-294)||(9810157-9810243)
chr5 (208-294)||(12702398-12702484)
chr5 (208-294)||(289019-289105)
chr5 (208-294)||(3211916-3212002)
chr5 (208-294)||(12763413-12763499)
chr5 (208-294)||(19393901-19393987)
chr5 (208-284)||(9701290-9701366)
chr5 (208-294)||(31297249-31297335)
[»] scaffold0376 (1 HSPs)
scaffold0376 (208-294)||(11126-11212)
[»] chr8 (9 HSPs)
chr8 (208-294)||(29432513-29432599)
chr8 (208-294)||(41906047-41906133)
chr8 (208-274)||(39202829-39202895)
chr8 (208-294)||(2961349-2961435)
chr8 (208-294)||(6302180-6302266)
chr8 (208-294)||(23968095-23968181)
chr8 (208-294)||(42062369-42062455)
chr8 (208-294)||(44938768-44938854)
chr8 (208-294)||(37028162-37028248)
[»] chr6 (9 HSPs)
chr6 (208-294)||(8614701-8614787)
chr6 (208-287)||(3052519-3052598)
chr6 (208-294)||(5753443-5753529)
chr6 (208-294)||(13458439-13458525)
chr6 (208-294)||(33318653-33318739)
chr6 (208-294)||(3089678-3089764)
chr6 (221-294)||(11518535-11518608)
chr6 (221-294)||(33977416-33977489)
chr6 (221-294)||(11269054-11269127)
[»] chr2 (11 HSPs)
chr2 (208-294)||(14751653-14751739)
chr2 (208-294)||(17024717-17024803)
chr2 (208-294)||(1994644-1994730)
chr2 (208-294)||(6344432-6344518)
chr2 (208-294)||(14324916-14325002)
chr2 (208-294)||(28500767-28500853)
chr2 (208-284)||(17036374-17036450)
chr2 (208-284)||(17090882-17090958)
chr2 (208-294)||(16882411-16882497)
chr2 (208-294)||(17040101-17040187)
chr2 (221-294)||(7360409-7360482)
[»] scaffold0010 (1 HSPs)
scaffold0010 (211-294)||(59064-59147)
[»] scaffold0249 (1 HSPs)
scaffold0249 (208-294)||(25263-25349)
[»] scaffold0051 (2 HSPs)
scaffold0051 (208-294)||(48511-48597)
scaffold0051 (208-294)||(63896-63982)


Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 15 - 294
Target Start/End: Complemental strand, 42246521 - 42246242
Alignment:
Q  15 agatccaacccaaccacatcatatgagtcctttgctaccatttatggagatttgctatgtttattcctccaagcaaagcgacccatcaaaatttagggta 114  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42246521 agatccaacccaaccacatcatatgagtcctttgctaccatttctggagatttgctatgtttattcctccaagcaaagcgacccatcaaaatttagggta 42246422  T
Q  115 attgggttcgttgtcttcaagaaagggaattcacagcaaaggccgtttaaaattgtggttaattgcattcacagcaaaggccgttcgttgtcatcatgaa 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   || |||||||||| |||| ||    
T  42246421 attgggttcgttgtcttcaagaaagggaattcacagcaaaggccgtttaaaattgtggttaattgcattcacagcagcagcagttcgttgtcttcatcaa 42246322  T
Q  215 tttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    ||||||||||||||||||||  |||||||| || |||||||||||||||||||||||||||||||| |||||||||||||    
T  42246321 tttcgctttaagtcatttaaaaaaattcaagatggaaaattcaaaactgacgttttatattggataattatgtactttaa 42246242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 208 - 294
Target Start/End: Original strand, 34130368 - 34130454
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    |||||||||||||||||||| ||||||| |||||||| || |||||||||||||||||||||||||||| |||||||||| ||||||    
T  34130368 tcatgaatttcgctttaagttatttaagaaaattcaagatggaaaattcaaaactgacgttttatattgtatagttatgttctttaa 34130454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 208 - 294
Target Start/End: Complemental strand, 47165369 - 47165283
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    |||||||||||||||||||| |||||||||||||||| ||  |||||||||||||||| |||||||||| |||||||||| ||||||    
T  47165369 tcatgaatttcgctttaagttatttaaggaaattcaagatgaaaaattcaaaactgacattttatattgtatagttatgtgctttaa 47165283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 208 - 274
Target Start/End: Original strand, 47172941 - 47173007
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatat 274  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  47172941 tcatgaatttcgctttaagtcatttaaggaaattcaagatggaaaattcaaaactgacgttttatat 47173007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 208 - 294
Target Start/End: Complemental strand, 6913153 - 6913067
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    |||||||||||| |||||||||||||||||||||||| || ||||||||||| ||||| ||||||||   |||||||||| ||||||    
T  6913153 tcatgaatttcgttttaagtcatttaaggaaattcaagatggaaaattcaaatctgacattttatatgatatagttatgtgctttaa 6913067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 208 - 294
Target Start/End: Complemental strand, 9228035 - 9227949
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    |||||||||||||||||||||||||| | |||||||| || ||||||| |||||||||||||||||| | ||||| |||| ||||||    
T  9228035 tcatgaatttcgctttaagtcatttaggaaaattcaagatggaaaatttaaaactgacgttttatatggtatagtcatgtgctttaa 9227949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 208 - 294
Target Start/End: Complemental strand, 47575130 - 47575044
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    |||||||||||| |||||||||||||||||||||||| || ||||||||||| ||||| ||||||||   |||||||||| ||||||    
T  47575130 tcatgaatttcgttttaagtcatttaaggaaattcaagatggaaaattcaaatctgacattttatatgatatagttatgtgctttaa 47575044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 41057378 - 41057434
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactga 264  Q
    |||||||||||||||||| ||||||||| |||||||| || ||||||||||||||||    
T  41057378 tcatgaatttcgctttaaatcatttaagaaaattcaagatggaaaattcaaaactga 41057434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 208 - 294
Target Start/End: Complemental strand, 66436 - 66350
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    |||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||| |||||||||| ||||||    
T  66436 tcatgaatttcgctttaagttatttaaggaaattcaagatggaaaattcaaaactgacgttttatattgtatagttatgtgctttaa 66350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 208 - 292
Target Start/End: Complemental strand, 153977 - 153893
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtacttt 292  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| | ||| |||||| ||||    
T  153977 tcatgaatttcgctttaagtcatttaaggaaattcaagatggaaaattcaaaactgacgttttatatggtataattatgtgcttt 153893  T

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Target: chr4 (Bit Score: 67; Significance: 8e-30; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 208 - 294
Target Start/End: Original strand, 1942964 - 1943050
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    |||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||| |||||||||| ||||||    
T  1942964 tcatgaatttcgctttaagttatttaaggaaattcaagatggaaaattcaaaactgacgttttatattgtatagttatgtgctttaa 1943050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 208 - 294
Target Start/End: Complemental strand, 41985046 - 41984960
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||| | |||||||||| ||||||    
T  41985046 tcatgaatttcgctttaagtcatttaaggaaattcaagatggaaaattcaaaactgaagttttatatggtatagttatgtgctttaa 41984960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 208 - 294
Target Start/End: Complemental strand, 47721863 - 47721777
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    |||||||||||||||||||||||||||| |||||||| || ||||||| |||||||||||||||||| | ||| |||||| ||||||    
T  47721863 tcatgaatttcgctttaagtcatttaagaaaattcaagatggaaaatttaaaactgacgttttatatggtataattatgtgctttaa 47721777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 208 - 294
Target Start/End: Complemental strand, 742098 - 742012
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    |||||||||||| |||||||||||||||||||||||| || ||||||||||| ||||| ||||||||   |||||||||| ||||||    
T  742098 tcatgaatttcgttttaagtcatttaaggaaattcaagatggaaaattcaaatctgacattttatatgatatagttatgtgctttaa 742012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 208 - 294
Target Start/End: Original strand, 15519317 - 15519403
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    |||||||||||| |||||||||||||||||||||||| || ||||||||||| ||||| ||||||||   |||||||||| ||||||    
T  15519317 tcatgaatttcgttttaagtcatttaaggaaattcaagatggaaaattcaaatctgacattttatatgatatagttatgtgctttaa 15519403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 208 - 294
Target Start/End: Complemental strand, 15650912 - 15650826
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    |||||||||| ||||||||| |||||||||||||||| || |||| |||||||||||||||||||||   |||||||||| ||||||    
T  15650912 tcatgaattttgctttaagttatttaaggaaattcaagatggaaagttcaaaactgacgttttatatcatatagttatgtgctttaa 15650826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 221 - 294
Target Start/End: Original strand, 16891521 - 16891594
Alignment:
Q  221 tttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    |||||| |||| |||||||||||| || |||||||||||| ||||||||||||||| |||||||||| ||||||    
T  16891521 tttaagacattaaaggaaattcaagatggaaaattcaaaattgacgttttatattgtatagttatgtgctttaa 16891594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 208 - 294
Target Start/End: Original strand, 19589313 - 19589401
Alignment:
Q  208 tcatgaatttcgcttta--agtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    |||||||||| ||||||  |||||||||||||||| ||| || ||||||| |||| ||||||||||||| | |||||||||| ||||||    
T  19589313 tcatgaattttgctttataagtcatttaaggaaatccaagatggaaaatttaaaattgacgttttatatggtatagttatgtgctttaa 19589401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 8e-30; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 208 - 294
Target Start/End: Original strand, 8240457 - 8240543
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| | |||||||||| ||||||    
T  8240457 tcatgaatttcgctttaagtcatttaaggaaattcaagatggaaaattcaaaactgacgttttatatggtatagttatgtgctttaa 8240543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 208 - 294
Target Start/End: Complemental strand, 54794764 - 54794678
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| | |||||||||| ||||||    
T  54794764 tcatgaatttcgctttaagtcatttaaggaaattcaagatggaaaattcaaaactgacgttttatatggtatagttatgtgctttaa 54794678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 208 - 294
Target Start/End: Complemental strand, 52463731 - 52463645
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||   |||||||||| ||||||    
T  52463731 tcatgaatttcgctttaagtcatttaaggaaattcaagatggaaaattcaaaactgacgttttatatgatatagttatgtgctttaa 52463645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 208 - 292
Target Start/End: Original strand, 16494326 - 16494410
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtacttt 292  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| | ||| |||||| ||||    
T  16494326 tcatgaatttcgctttaagtcatttaaggaaattcaagatggaaaattcaaaactgacgttttatatggtataattatgtgcttt 16494410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 208 - 294
Target Start/End: Complemental strand, 15315691 - 15315605
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    |||||||||||||||||||| |||||||||||||||| || |||| |||||| |||||||||||||||| |||||||||| ||||||    
T  15315691 tcatgaatttcgctttaagttatttaaggaaattcaagatggaaagttcaaatctgacgttttatattgtatagttatgtgctttaa 15315605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 208 - 294
Target Start/End: Complemental strand, 26036235 - 26036149
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    |||||||||||||||||||| ||||||| |||||||| || |||| ||||||||||||||||||||||| |||||||||| ||||||    
T  26036235 tcatgaatttcgctttaagttatttaagaaaattcaagatggaaagttcaaaactgacgttttatattgtatagttatgtgctttaa 26036149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 208 - 294
Target Start/End: Original strand, 35435421 - 35435507
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    ||||||||||| |||||||||||||||| |||||||| || ||||||| |||||||||||||||||| | |||||||||| ||||||    
T  35435421 tcatgaatttcactttaagtcatttaagaaaattcaagatggaaaatttaaaactgacgttttatatggtatagttatgtgctttaa 35435507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 208 - 294
Target Start/End: Complemental strand, 36169270 - 36169184
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    |||||||||||||||||||||||||||| |||||||| || ||| ||| |||||||||||||||||| | |||||||||| ||||||    
T  36169270 tcatgaatttcgctttaagtcatttaagaaaattcaagatggaagatttaaaactgacgttttatatggtatagttatgtgctttaa 36169184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 208 - 294
Target Start/End: Complemental strand, 12169746 - 12169660
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    |||||||||||||||||||||||||||| |||||||| || ||||||| ||||||||| |||||||| | ||| |||||| ||||||    
T  12169746 tcatgaatttcgctttaagtcatttaagaaaattcaagatggaaaatttaaaactgactttttatatggtataattatgtgctttaa 12169660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 208 - 294
Target Start/End: Complemental strand, 39798135 - 39798049
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    |||||||||||| |||||||||||||||||||||||| || ||||||||||| ||||| ||||||||   |||||||||| ||||||    
T  39798135 tcatgaatttcgttttaagtcatttaaggaaattcaagatggaaaattcaaatctgacattttatatgatatagttatgtgctttaa 39798049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 208 - 294
Target Start/End: Complemental strand, 5254047 - 5253961
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    |||||||||||| ||||||||||||||| |||||||| || ||||||||||| ||||| ||||||||   |||||||||| ||||||    
T  5254047 tcatgaatttcgttttaagtcatttaagaaaattcaagatggaaaattcaaatctgacattttatatgatatagttatgtgctttaa 5253961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 226 - 294
Target Start/End: Original strand, 11382313 - 11382380
Alignment:
Q  226 gtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    ||||||||||||||||||| || |||| ||||||||||||||||||||| | |||||||||| ||||||    
T  11382313 gtcatttaaggaaattcaagatggaaa-ttcaaaactgacgttttatatggtatagttatgtgctttaa 11382380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 8e-30; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 208 - 294
Target Start/End: Original strand, 18095268 - 18095354
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| | |||||||||| ||||||    
T  18095268 tcatgaatttcgctttaagtcatttaaggaaattcaagatggaaaattcaaaactgacgttttatatggtatagttatgtgctttaa 18095354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 208 - 294
Target Start/End: Original strand, 49224738 - 49224824
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||| | |||||||||| ||||||    
T  49224738 tcatgaatttcgctttaagtcatttaaggaaattcaagatggaaaattcaaaattgacgttttatatggtatagttatgtgctttaa 49224824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 208 - 292
Target Start/End: Complemental strand, 13664212 - 13664128
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtacttt 292  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| | ||| |||||| ||||    
T  13664212 tcatgaatttcgctttaagtcatttaaggaaattcaagatggaaaattcaaaactgacgttttatatggtataattatgtgcttt 13664128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 208 - 292
Target Start/End: Complemental strand, 28567514 - 28567430
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtacttt 292  Q
    ||||||||||||||||||| |||||| |||||||||| || |||||||||||||||||||||||||| | |||||||||| ||||    
T  28567514 tcatgaatttcgctttaagccatttagggaaattcaagatggaaaattcaaaactgacgttttatatggtatagttatgtgcttt 28567430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 208 - 294
Target Start/End: Original strand, 18110176 - 18110262
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    |||||||||||| |||||||||||||||||||||||| || ||||||||||| ||||| ||||||||   |||||||||| ||||||    
T  18110176 tcatgaatttcgttttaagtcatttaaggaaattcaagatggaaaattcaaatctgacattttatatgatatagttatgtgctttaa 18110262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 208 - 294
Target Start/End: Complemental strand, 43256345 - 43256259
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    |||||||||||| |||||||||||||||||||||||| || ||||||||||| ||||| ||||||||   |||||||||| ||||||    
T  43256345 tcatgaatttcgttttaagtcatttaaggaaattcaagatggaaaattcaaatctgacattttatatgatatagttatgtgctttaa 43256259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 208 - 294
Target Start/End: Complemental strand, 50396759 - 50396673
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    |||||||||||| |||||||||||||||||||||||| || ||||||||||| ||||| ||||||||   |||||||||| ||||||    
T  50396759 tcatgaatttcgttttaagtcatttaaggaaattcaagatggaaaattcaaatctgacattttatatgatatagttatgtgctttaa 50396673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 211 - 294
Target Start/End: Complemental strand, 18039947 - 18039864
Alignment:
Q  211 tgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||| | ||||| |||||||||||    
T  18039947 tgaatttcgctttaagtcatttaaggaaattcaagatggaaaattcaaaaccgacgttttatatggtatagtcatgtactttaa 18039864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 208 - 294
Target Start/End: Complemental strand, 7863951 - 7863865
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    |||||||||||||||||||| |||||||||||||||| || |||| ||||||||||| ||||||||||| |||||||||| ||||||    
T  7863951 tcatgaatttcgctttaagttatttaaggaaattcaagatggaaagttcaaaactgatgttttatattgcatagttatgtgctttaa 7863865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 208 - 294
Target Start/End: Complemental strand, 9810243 - 9810157
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    |||||||||||||||||||| ||||||| |||||||| || |||| ||||||||||||||||||||||| |||||||||| ||||||    
T  9810243 tcatgaatttcgctttaagttatttaagaaaattcaagatggaaagttcaaaactgacgttttatattgtatagttatgtgctttaa 9810157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 208 - 294
Target Start/End: Complemental strand, 12702484 - 12702398
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    |||||||||||||||||||| ||||||| |||||||| || |||| ||||||||||||||||||||||| |||||||||| ||||||    
T  12702484 tcatgaatttcgctttaagttatttaagaaaattcaagatggaaagttcaaaactgacgttttatattgtatagttatgtgctttaa 12702398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 208 - 294
Target Start/End: Original strand, 289019 - 289105
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    |||||||||||||||||||||||||||| |||||||| || ||||||| ||||||||| |||||||| | |||||||||| ||||||    
T  289019 tcatgaatttcgctttaagtcatttaagaaaattcaagatggaaaatttaaaactgaccttttatatggtatagttatgttctttaa 289105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 208 - 294
Target Start/End: Complemental strand, 3212002 - 3211916
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||||| | ||||||||| | ||||||| || ||||||    
T  3212002 tcatgaatttcgctttaagtcatttaaggaaattcaagatggaaaattcaaaactaaggttttatatggtatagttacgtgctttaa 3211916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 208 - 294
Target Start/End: Complemental strand, 12763499 - 12763413
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    |||||||||||||||||| | ||||||| |||||||| || |||| ||||||||||||||||||||||| |||||||||| ||||||    
T  12763499 tcatgaatttcgctttaaattatttaagaaaattcaagatggaaagttcaaaactgacgttttatattgtatagttatgtgctttaa 12763413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 208 - 294
Target Start/End: Original strand, 19393901 - 19393987
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    |||||||||||| |||||||||||||||||||||||| || ||||||||||||||||| ||||||||   |||||||||| ||||||    
T  19393901 tcatgaatttcgttttaagtcatttaaggaaattcaagatggaaaattcaaaactgacattttatatgatatagttatgtgctttaa 19393987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 208 - 284
Target Start/End: Original strand, 9701290 - 9701366
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagtta 284  Q
    |||||||||||||||  |||||||||||||||||||| ||  ||||||||||||||||||||||||| | |||||||    
T  9701290 tcatgaatttcgcttagagtcatttaaggaaattcaagatgaaaaattcaaaactgacgttttatatggtatagtta 9701366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 208 - 294
Target Start/End: Complemental strand, 31297335 - 31297249
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    |||||||||||| ||||||||||||||| |||||||| || ||||||||||| ||||| ||||||||   |||||||||| ||||||    
T  31297335 tcatgaatttcgttttaagtcatttaagaaaattcaagatggaaaattcaaatctgacattttatatgatatagttatgtgctttaa 31297249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0376 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 208 - 294
Target Start/End: Complemental strand, 11212 - 11126
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    |||||||||||||||||||| |||||||||||||||| || |||| ||||||||| ||||||||||||| |||||||||| ||||||    
T  11212 tcatgaatttcgctttaagttatttaaggaaattcaagatggaaagttcaaaactaacgttttatattgtatagttatgtgctttaa 11126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 5e-25; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 208 - 294
Target Start/End: Original strand, 29432513 - 29432599
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    ||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||| |||| | |||||||||| ||||||    
T  29432513 tcatgaatttcactttaagtcatttaaggaaattcaagatggaaaattcaaaactgacgtttaatatggtatagttatgtgctttaa 29432599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 208 - 294
Target Start/End: Original strand, 41906047 - 41906133
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    |||||||||||| |||||||||||||||||||||||| || ||||||||||| |||||||||||||| | |||||||||| ||||||    
T  41906047 tcatgaatttcgttttaagtcatttaaggaaattcaagatggaaaattcaaatctgacgttttatatggtatagttatgtgctttaa 41906133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 208 - 274
Target Start/End: Original strand, 39202829 - 39202895
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatat 274  Q
    |||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||    
T  39202829 tcatgaatttcgctttaagtcatttaagaaaattcaagatggaaaattcaaaactgacgttttatat 39202895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 208 - 294
Target Start/End: Complemental strand, 2961435 - 2961349
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    |||||||||| ||||||||| |||||||||||||||| || |||| |||||||||||||||||||||   |||||||||| ||||||    
T  2961435 tcatgaattttgctttaagttatttaaggaaattcaagatggaaagttcaaaactgacgttttatatcatatagttatgtgctttaa 2961349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 208 - 294
Target Start/End: Complemental strand, 6302266 - 6302180
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    |||||||||||| |||||||||||||||||||||||| || ||||||||||| ||||| ||||||||   |||||||||| ||||||    
T  6302266 tcatgaatttcgttttaagtcatttaaggaaattcaagatggaaaattcaaatctgacattttatatgatatagttatgtgctttaa 6302180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 208 - 294
Target Start/End: Complemental strand, 23968181 - 23968095
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    |||||||||||| |||||||||||||||||||||||| || ||||||||||| ||||| ||||||||   |||||||||| ||||||    
T  23968181 tcatgaatttcgttttaagtcatttaaggaaattcaagatggaaaattcaaatctgacattttatatgatatagttatgtgctttaa 23968095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 208 - 294
Target Start/End: Complemental strand, 42062455 - 42062369
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    |||||||||||| |||||||||||||||||||||||| || ||||||||||| ||||| ||||||||   |||||||||| ||||||    
T  42062455 tcatgaatttcgttttaagtcatttaaggaaattcaagatggaaaattcaaatctgacattttatatgatatagttatgtgctttaa 42062369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 208 - 294
Target Start/End: Original strand, 44938768 - 44938854
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    |||||||||||| |||||||||||||||||||||||| || ||||||||||| ||||| ||||||||   |||||||||| ||||||    
T  44938768 tcatgaatttcgttttaagtcatttaaggaaattcaagatggaaaattcaaatctgacattttatatgatatagttatgtgctttaa 44938854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 208 - 294
Target Start/End: Original strand, 37028162 - 37028248
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    |||||||||||| ||||||||||||||| |||||||| || ||||||||||| ||||| ||||||||   |||||||||| ||||||    
T  37028162 tcatgaatttcgttttaagtcatttaagaaaattcaagatggaaaattcaaatctgacattttatatgatatagttatgtgctttaa 37028248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 5e-25; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 208 - 294
Target Start/End: Original strand, 8614701 - 8614787
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    |||||||||||||||||||| |||||||||||||||| || |||| ||||||||||| ||||||||||| |||||||||| ||||||    
T  8614701 tcatgaatttcgctttaagttatttaaggaaattcaagatggaaagttcaaaactgatgttttatattgcatagttatgtgctttaa 8614787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 208 - 287
Target Start/End: Complemental strand, 3052598 - 3052519
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgt 287  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||| | ||||| ||||    
T  3052598 tcatgaatttcgctttaagtcatttaaggaaattcaagatggaaaattcaaaaccgacgttttatatggtatagtcatgt 3052519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 208 - 294
Target Start/End: Complemental strand, 5753529 - 5753443
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    |||||||||||||||||||| ||||||| |||||||| |  ||||| |||||||||||||||||||||| |||||||||| ||||||    
T  5753529 tcatgaatttcgctttaagttatttaagaaaattcaagacggaaaaatcaaaactgacgttttatattgtatagttatgtgctttaa 5753443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 208 - 294
Target Start/End: Complemental strand, 13458525 - 13458439
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    |||||||||||| |||||||||||||||||||||||| || ||||||||||| ||||| ||||||||   |||||||||| ||||||    
T  13458525 tcatgaatttcgttttaagtcatttaaggaaattcaagatggaaaattcaaatctgacattttatatgatatagttatgtgctttaa 13458439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 208 - 294
Target Start/End: Original strand, 33318653 - 33318739
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    |||||||| || |||||||| |||||||||||||||| || |||| |||||||||| |||||||||||| |||||||||| ||||||    
T  33318653 tcatgaatatcactttaagttatttaaggaaattcaagatggaaagttcaaaactggcgttttatattgtatagttatgtgctttaa 33318739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 208 - 294
Target Start/End: Complemental strand, 3089764 - 3089678
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    |||||||||||||||||||| ||||||| |||||||| || ||||||||||||||| ||||||| || | || ||||||| ||||||    
T  3089764 tcatgaatttcgctttaagttatttaagaaaattcaagatggaaaattcaaaactggcgttttagatggtatggttatgtgctttaa 3089678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 294
Target Start/End: Complemental strand, 11518608 - 11518535
Alignment:
Q  221 tttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    |||||| |||| ||| |||||||| || |||||||||||| | | ||||||||||| |||||||||| ||||||    
T  11518608 tttaagacattaaagaaaattcaagatggaaaattcaaaattaatgttttatattgtatagttatgtgctttaa 11518535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 294
Target Start/End: Original strand, 33977416 - 33977489
Alignment:
Q  221 tttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    |||||||||||||||||||| ||| || ||||||| |||| |||  |||||||| | |||||||||| ||||||    
T  33977416 tttaagtcatttaaggaaatccaagatggaaaatttaaaattgaaattttatatggtatagttatgtgctttaa 33977489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 294
Target Start/End: Original strand, 11269054 - 11269127
Alignment:
Q  221 tttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    |||||| |||| ||||||||| || || |||||||||||| | ||| ||||||||  |||||||||| ||||||    
T  11269054 tttaagacattaaaggaaattgaagatggaaaattcaaaattaacgctttatattatatagttatgtgctttaa 11269127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 208 - 294
Target Start/End: Original strand, 14751653 - 14751739
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    |||||||||||||||||||||||||||| |||||||| || ||||||| |||||||||||||||||| | |||||||||| ||||||    
T  14751653 tcatgaatttcgctttaagtcatttaagaaaattcaagatggaaaatttaaaactgacgttttatatggtatagttatgtgctttaa 14751739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 208 - 294
Target Start/End: Original strand, 17024717 - 17024803
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    |||||||||||||||  ||||||||||| |||||||| ||  ||||||||||||||||||||||||| | |||||||||||||||||    
T  17024717 tcatgaatttcgcttagagtcatttaagaaaattcaagatgaaaaattcaaaactgacgttttatatggtatagttatgtactttaa 17024803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 208 - 294
Target Start/End: Complemental strand, 1994730 - 1994644
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    |||||||||||| |||||||||||||||||||||||| || ||||||||||| ||||| ||||||||   |||||||||| ||||||    
T  1994730 tcatgaatttcgttttaagtcatttaaggaaattcaagatggaaaattcaaatctgacattttatatgatatagttatgtgctttaa 1994644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 208 - 294
Target Start/End: Complemental strand, 6344518 - 6344432
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    |||||||||||| |||||||||||||||||||||||| || ||||||||||| ||||| ||||||||   |||||||||| ||||||    
T  6344518 tcatgaatttcgttttaagtcatttaaggaaattcaagatggaaaattcaaatctgacattttatatgatatagttatgtgctttaa 6344432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 208 - 294
Target Start/End: Complemental strand, 14325002 - 14324916
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    |||||||||||| |||||||||||||||||||||||| || ||||||||||| ||||| ||||||||   |||||||||| ||||||    
T  14325002 tcatgaatttcgttttaagtcatttaaggaaattcaagatggaaaattcaaatctgacattttatatgatatagttatgtgctttaa 14324916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 208 - 294
Target Start/End: Original strand, 28500767 - 28500853
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    |||||||||||| |||||||||||||||||||||||| || ||||||||||| ||||| ||||||||   |||||||||| ||||||    
T  28500767 tcatgaatttcgttttaagtcatttaaggaaattcaagatggaaaattcaaatctgacattttatatgatatagttatgtgctttaa 28500853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 208 - 284
Target Start/End: Original strand, 17036374 - 17036450
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagtta 284  Q
    |||||||||||||||  ||||||||||| |||||||| ||  ||||||||||||||||||||||||| | |||||||    
T  17036374 tcatgaatttcgcttagagtcatttaagaaaattcaagatgaaaaattcaaaactgacgttttatatggtatagtta 17036450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 208 - 284
Target Start/End: Original strand, 17090882 - 17090958
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagtta 284  Q
    |||||||||||||||  ||||||||||| |||||||| ||  ||||||||||||||||||||||||| | |||||||    
T  17090882 tcatgaatttcgcttagagtcatttaagaaaattcaagatgaaaaattcaaaactgacgttttatatggtatagtta 17090958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 294
Target Start/End: Original strand, 16882411 - 16882497
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    |||| |||||||||||||||  ||||||||||||||| ||  |||||||||| ||||||||||||||   |||||||||| ||||||    
T  16882411 tcattaatttcgctttaagtattttaaggaaattcaagatgcaaaattcaaatctgacgttttatatgatatagttatgtgctttaa 16882497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 294
Target Start/End: Original strand, 17040101 - 17040187
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    |||| |||||||||||||||  ||||||||||||||| ||  |||||||||| ||||||||||||||   |||||||||| ||||||    
T  17040101 tcattaatttcgctttaagtattttaaggaaattcaagatgcaaaattcaaatctgacgttttatatgatatagttatgtgctttaa 17040187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 294
Target Start/End: Original strand, 7360409 - 7360482
Alignment:
Q  221 tttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    |||||| |||| |||||||||||| || |||||||||||| | |  |||||||||| |||||||||| ||||||    
T  7360409 tttaagacattaaaggaaattcaagatggaaaattcaaaattaattttttatattgtatagttatgtgctttaa 7360482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 211 - 294
Target Start/End: Original strand, 59064 - 59147
Alignment:
Q  211 tgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    ||||||||||||||||||||||||| |||||||| || ||| |||||||||||||||||||||| | |||||||||| ||||||    
T  59064 tgaatttcgctttaagtcatttaagaaaattcaagatggaacattcaaaactgacgttttatatggtatagttatgtgctttaa 59147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 208 - 294
Target Start/End: Complemental strand, 25349 - 25263
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    ||||||||||| |||||||| |||||||||||||||| || |||| |||||||||| |||||||||||| |||||||||| ||||||    
T  25349 tcatgaatttcactttaagttatttaaggaaattcaagatggaaagttcaaaactggcgttttatattgtatagttatgtgctttaa 25263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 208 - 294
Target Start/End: Original strand, 48511 - 48597
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    |||||||||||||||||||||||||||| |||||||| || ||||||| ||||||||||||||||||   |||||||||| ||||||    
T  48511 tcatgaatttcgctttaagtcatttaagaaaattcaagatggaaaatttaaaactgacgttttatatgatatagttatgtgctttaa 48597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 208 - 294
Target Start/End: Original strand, 63896 - 63982
Alignment:
Q  208 tcatgaatttcgctttaagtcatttaaggaaattcaaaatagaaaattcaaaactgacgttttatattggatagttatgtactttaa 294  Q
    |||||||||||||||||||||||||||| |||||||| || ||||||| ||||||||||||||||||   |||||||||| ||||||    
T  63896 tcatgaatttcgctttaagtcatttaagaaaattcaagatggaaaatttaaaactgacgttttatatgatatagttatgtgctttaa 63982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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