View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20381_low_36 (Length: 289)
Name: NF20381_low_36
Description: NF20381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20381_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 55076448 - 55076175
Alignment:
| Q |
1 |
agggcggcggcgaccaaaacgagaatgacttcggtcactgtagtagccaacgattggctggacgatcatgcctgatatgggaccacatagccagatgttg |
100 |
Q |
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| T |
55076448 |
agggcggcggcgaccaaaacgagaatgacttcggtcactgtagtatccaacgattggctggacgatcatgcctgatatgggaccacatagccagatgttg |
55076349 |
T |
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| Q |
101 |
gcagcccacttgtgaggtacacctagaagctgaatgtatggtgtgagaagggagagctgtagggcccacccaaattgtatgccggcggcaatggatgcca |
200 |
Q |
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| T |
55076348 |
gcagcccacttgtgaggtacacctagaagctgaatgtatggtgtgagaagggagagctgtagggcccacccaaattgtatgccggcggcaatggatgcca |
55076249 |
T |
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| Q |
201 |
cggcaatcatcttacggagagggcagggcttccgatctgcagcctcct---cctcaacttgaagggatgaaatt |
271 |
Q |
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| T |
55076248 |
caacaatcatcttacggagagggcatggcttctgatctgcagcctcctcctcctcaacttgaagggatgaaatt |
55076175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 198
Target Start/End: Original strand, 15125621 - 15125802
Alignment:
| Q |
17 |
aaacgagaatgacttcggtcactgtagtagccaacgattggctggacgatcatgcctgatatgggaccacatagccagatgttggcagcccacttgtgag |
116 |
Q |
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| T |
15125621 |
aaacgtgaatggcttcggtcactgtagtagcctacaagtggttgtatgatcatacctgaaattggaccacatagccagatgttggcagcccactgatgtg |
15125720 |
T |
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| Q |
117 |
gtacacctagaagctgaatgtatggtgtgagaagggagagctgtagggcccacccaaattgtatgccggcggcaatggatgc |
198 |
Q |
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| T |
15125721 |
ggacaccaagcaactggacatatggtgttagcaatgaaagctgtagggcccacccgaattgaataccggccgcgatggatgc |
15125802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 202
Target Start/End: Complemental strand, 10931880 - 10931826
Alignment:
| Q |
148 |
aagggagagctgtagggcccacccaaattgtatgccggcggcaatggatgccacg |
202 |
Q |
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| T |
10931880 |
aagggagagctgtagggcccatccgaattgaatgccggcggcgatggacgccacg |
10931826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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