View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20381_low_39 (Length: 273)

Name: NF20381_low_39
Description: NF20381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20381_low_39
NF20381_low_39
[»] chr8 (6 HSPs)
chr8 (144-260)||(4141756-4141872)
chr8 (75-120)||(4141896-4141941)
chr8 (151-263)||(9779781-9779894)
chr8 (145-200)||(7503887-7503942)
chr8 (18-51)||(4141942-4141975)
chr8 (62-106)||(9779927-9779971)
[»] chr7 (2 HSPs)
chr7 (148-251)||(5031193-5031297)
chr7 (147-256)||(26554366-26554476)
[»] chr4 (3 HSPs)
chr4 (145-256)||(3516841-3516953)
chr4 (145-217)||(29236550-29236622)
chr4 (62-119)||(11167120-11167177)
[»] chr6 (5 HSPs)
chr6 (145-263)||(9860125-9860244)
chr6 (145-251)||(6120084-6120191)
chr6 (145-217)||(26304314-26304386)
chr6 (144-217)||(30351220-30351293)
chr6 (64-108)||(22607389-22607433)
[»] chr1 (3 HSPs)
chr1 (147-263)||(41151223-41151340)
chr1 (62-120)||(38703383-38703441)
chr1 (62-119)||(27232417-27232473)
[»] chr2 (7 HSPs)
chr2 (194-262)||(19546580-19546648)
chr2 (147-263)||(15954324-15954441)
chr2 (147-248)||(32188360-32188462)
chr2 (147-235)||(11112927-11113015)
chr2 (62-97)||(40453257-40453292)
chr2 (156-257)||(32973526-32973628)
chr2 (62-119)||(2461419-2461476)
[»] chr3 (2 HSPs)
chr3 (145-263)||(19116686-19116804)
chr3 (197-263)||(26618587-26618654)
[»] scaffold0426 (1 HSPs)
scaffold0426 (153-263)||(2579-2689)
[»] chr5 (2 HSPs)
chr5 (145-200)||(8760018-8760073)
chr5 (149-263)||(30860589-30860702)


Alignment Details
Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 144 - 260
Target Start/End: Complemental strand, 4141872 - 4141756
Alignment:
144 cacttgtacctacggacaaaatccgtcatgaaatgtcatttttctgtaagtaaaagttcagaattcaactatttaatttcaactatacattgtccgtagg 243  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
4141872 cacttgtaactacggacaaaatccgtcataaaatgtcatttttctgtaagtaaaagttcagaattcaactatttaatttcaactatacattgtccatagg 4141773  T
244 taaatgtcaatttgtct 260  Q
    |||||||||||||||||    
4141772 taaatgtcaatttgtct 4141756  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 120
Target Start/End: Complemental strand, 4141941 - 4141896
Alignment:
75 ggtccttggcacagggcctcaaacttaaaggggctttaaaatttgg 120  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||    
4141941 ggtccttggcacagggcctcaaacttaaagaggcttcaaaatttgg 4141896  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 263
Target Start/End: Complemental strand, 9779894 - 9779781
Alignment:
151 acctacggacaaaatccgtcatgaaatgtcatttttctgtaagtaaaagttcagaattcaacta-tttaatttcaactatacattgtccgtaggtaaatg 249  Q
    |||||||||||||||||||||| |||| ||||||| |  |||||||||||  ||||||| |||| |||| | |||| | ||||||||  |||||||||||    
9779894 acctacggacaaaatccgtcattaaatatcattttcccataagtaaaagtctagaattccactattttactatcaattgtacattgtttgtaggtaaatg 9779795  T
250 tcaatttgtctgtg 263  Q
    |   ||||||||||    
9779794 tgtgtttgtctgtg 9779781  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 200
Target Start/End: Original strand, 7503887 - 7503942
Alignment:
145 acttgtacctacggacaaaatccgtcatgaaatgtcatttttctgtaagtaaaagt 200  Q
    ||||||| |||| ||||||||| ||||| ||||||||||||| |||| ||||||||    
7503887 acttgtatctacagacaaaatctgtcattaaatgtcatttttttgtaggtaaaagt 7503942  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 4141975 - 4141942
Alignment:
18 atgcatgggatcaatactaccattgttaagaggg 51  Q
    ||||||||||||||||||||||||||||| ||||    
4141975 atgcatgggatcaatactaccattgttaacaggg 4141942  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 9779971 - 9779927
Alignment:
62 gcaagtgcatcaaggtccttggcacagggcctcaaacttaaaggg 106  Q
    |||||||||||||| ||||||||||| | |||||| |||||||||    
9779971 gcaagtgcatcaagttccttggcacaagacctcaagcttaaaggg 9779927  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 148 - 251
Target Start/End: Original strand, 5031193 - 5031297
Alignment:
148 tgtacctacggacaaaatccgtcatgaaatgtcatttttctgtaagtaaaagttcagaattcaacta-tttaatttcaactatacattgtccgtaggtaa 246  Q
    |||||||||||||||||| |||||  ||||||||||||||  ||| ||||||| ||||||||||||| |||| | |||| |||||||||| |||||||||    
5031193 tgtacctacggacaaaattcgtcactaaatgtcatttttccataaataaaagtccagaattcaactattttactgtcaattatacattgttcgtaggtaa 5031292  T
247 atgtc 251  Q
    |||||    
5031293 atgtc 5031297  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 256
Target Start/End: Complemental strand, 26554476 - 26554366
Alignment:
147 ttgtacctacggacaaaatccgtcatgaaatgtcatttttctgtaagtaaaagttcagaattcaactatttaatt-tcaactatacattgtccgtaggta 245  Q
    ||||||||||||||||||| |||||  ||||||||||| |||||| |||||||| |  ||||||||||||| | | || |  |||||||||||||| |||    
26554476 ttgtacctacggacaaaatacgtcactaaatgtcatttatctgtaggtaaaagtccgaaattcaactattttactgtccataatacattgtccgtaagta 26554377  T
246 aatgtcaattt 256  Q
    |||||| ||||    
26554376 aatgtctattt 26554366  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 145 - 256
Target Start/End: Complemental strand, 3516953 - 3516841
Alignment:
145 acttgtacctacggacaaaatccgtcatgaaatgtcatttttctgtaagtaaaagttcagaattcaactatttaatt-tcaactatacattgtccgtagg 243  Q
    |||| |||||||||||||||| |||||  |||||||||||||  ||| ||||||||  ||||||||||||||| ||| |||| |||||||| ||||||||    
3516953 acttatacctacggacaaaattcgtcactaaatgtcattttttcgtaggtaaaagtctagaattcaactattttattgtcaattatacattctccgtagg 3516854  T
244 taaatgtcaattt 256  Q
    |||||||| ||||    
3516853 taaatgtctattt 3516841  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 145 - 217
Target Start/End: Original strand, 29236550 - 29236622
Alignment:
145 acttgtacctacggacaaaatccgtcatgaaatgtcatttttctgtaagtaaaagttcagaattcaactattt 217  Q
    |||||||||||||||||||||||||||  |||||||||||||| ||| |||||||| ||||| ||||||||||    
29236550 acttgtacctacggacaaaatccgtcactaaatgtcatttttccgtaggtaaaagtccagaaatcaactattt 29236622  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 119
Target Start/End: Complemental strand, 11167177 - 11167120
Alignment:
62 gcaagtgcatcaaggtccttggcacagggcctcaaacttaaaggggctttaaaatttg 119  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||    
11167177 gcaagtgcatctaggcccttggcacagggcctcaaacttaaaggggcttcaaaatttg 11167120  T

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Target: chr6 (Bit Score: 52; Significance: 7e-21; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 145 - 263
Target Start/End: Original strand, 9860125 - 9860244
Alignment:
145 acttgtacctacggacaaaatccgtcatgaaatgtcatttttctgtaagtaaaagttcagaattcaacta-tttaatttcaactatacattgtccgtagg 243  Q
    |||||||||||| |||||||||| |||| |||| || |||||| ||| ||||||||| |||||||||||| |||| | ||||  || ||||||| |||||    
9860125 acttgtacctacagacaaaatccttcattaaatatcttttttccgtaggtaaaagtttagaattcaactattttactgtcaatgatgcattgtctgtagg 9860224  T
244 taaatgtcaatttgtctgtg 263  Q
    |||||||| |||||||||||    
9860225 taaatgtctatttgtctgtg 9860244  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 251
Target Start/End: Complemental strand, 6120191 - 6120084
Alignment:
145 acttgtacctacggacaaaatccgtcatgaaatgtcatttttctgtaagtaaaagttcagaattcaacta-tttaatttcaactatacattgtccgtagg 243  Q
    ||||||||||| |||||||||| ||||  ||||||||||||||  |  ||| |||| ||||||||||||| |||| | |||| |||||||| ||||| ||    
6120191 acttgtacctatggacaaaatcggtcactaaatgtcatttttccttgggtagaagtccagaattcaactattttactgtcaattatacattatccgtcgg 6120092  T
244 taaatgtc 251  Q
    ||||||||    
6120091 taaatgtc 6120084  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 217
Target Start/End: Original strand, 26304314 - 26304386
Alignment:
145 acttgtacctacggacaaaatccgtcatgaaatgtcatttttctgtaagtaaaagttcagaattcaactattt 217  Q
    |||| |||||||| ||||||||  |||| |||||||||||||||||| ||||||||  | |||||||| ||||    
26304314 acttctacctacgaacaaaatctatcataaaatgtcatttttctgtaggtaaaagtctaaaattcaacaattt 26304386  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 217
Target Start/End: Complemental strand, 30351293 - 30351220
Alignment:
144 cacttgtacctacggacaaaatccgtcatgaaatgtcatttttctgtaagtaaaagttcagaattcaactattt 217  Q
    |||||| |||||||| |||||||| |||  |||||||||||||   || |||||||| || |||||||||||||    
30351293 cacttgcacctacggtcaaaatccatcactaaatgtcattttttcttaggtaaaagtccataattcaactattt 30351220  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 22607433 - 22607389
Alignment:
64 aagtgcatcaaggtccttggcacagggcctcaaacttaaaggggc 108  Q
    ||||||||||||| |||||||||| |||| ||||||| |||||||    
22607433 aagtgcatcaaggcccttggcacatggccacaaactttaaggggc 22607389  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 147 - 263
Target Start/End: Original strand, 41151223 - 41151340
Alignment:
147 ttgtacctacggacaaaatccgtcatgaaatgtcatttttctgtaagtaaaagttcagaattcaactatttaat-ttcaactatacattgtccgtaggta 245  Q
    |||||||| | ||||||||| ||||  |||||| ||||| |  ||||||||||| | |||||||||||| | || ||||| |||||||||||||||||||    
41151223 ttgtacctgcagacaaaatctgtcactaaatgttattttcccataagtaaaagtccggaattcaactatgttatgttcaattatacattgtccgtaggta 41151322  T
246 aatgtcaatttgtctgtg 263  Q
    |||||| |||||| ||||    
41151323 aatgtctatttgtttgtg 41151340  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 120
Target Start/End: Complemental strand, 38703441 - 38703383
Alignment:
62 gcaagtgcatcaaggtccttggcacagggcctcaaacttaaaggggctttaaaatttgg 120  Q
    |||||||||||||||||||||||||| ||| ||||||| ||||| || | |||||||||    
38703441 gcaagtgcatcaaggtccttggcacaaggcttcaaactcaaaggagcctcaaaatttgg 38703383  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 119
Target Start/End: Complemental strand, 27232473 - 27232417
Alignment:
62 gcaagtgcatcaaggtccttggcacagggcctcaaacttaaaggggctttaaaatttg 119  Q
    ||||||||||||||  |||||||||||||||| ||| ||| |||||||| ||||||||    
27232473 gcaagtgcatcaagc-ccttggcacagggccttaaagttagaggggcttcaaaatttg 27232417  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 262
Target Start/End: Complemental strand, 19546648 - 19546580
Alignment:
194 taaaagttcagaattcaactatttaatttcaactatacattgtccgtaggtaaatgtcaatttgtctgt 262  Q
    ||||||| ||||||||||||||||| | |||| |||||||||||| |||||||||||  ||||||||||    
19546648 taaaagtccagaattcaactatttactgtcaattatacattgtccataggtaaatgtatatttgtctgt 19546580  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 263
Target Start/End: Original strand, 15954324 - 15954441
Alignment:
147 ttgtacctacggacaaaatccgtcatgaaatgtcatttttctgtaagtaaaagttcagaattcaactatttaatt-tcaactatacattgtccgtaggta 245  Q
    ||||||||||||||| |||  ||||  |||||  ||||||||||| |||||||   | ||||||||||||| | | |||| |||||||||| | ||||||    
15954324 ttgtacctacggacataatatgtcactaaatgcgatttttctgtaggtaaaagcctataattcaactattttactgtcaattatacattgttcataggta 15954423  T
246 aatgtcaatttgtctgtg 263  Q
    |||||| |||||||||||    
15954424 aatgtctatttgtctgtg 15954441  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 248
Target Start/End: Original strand, 32188360 - 32188462
Alignment:
147 ttgtacctacggacaaaatccgtcatgaaatgtcatttttctgtaagtaaaagttcagaattcaacta-tttaatttcaactatacattgtccgtaggta 245  Q
    ||||||||| |||||||||| | ||  |||| |||| |||| ||| |||||| |||| |||||||||| |||| | |||| |||||||||| ||||||||    
32188360 ttgtacctaaggacaaaatctgccactaaatatcatgtttccgtaggtaaaaattcataattcaactattttactgtcaattatacattgttcgtaggta 32188459  T
246 aat 248  Q
    |||    
32188460 aat 32188462  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 235
Target Start/End: Complemental strand, 11113015 - 11112927
Alignment:
147 ttgtacctacggacaaaatccgtcatgaaatgtcatttttctgtaagtaaaagttcagaattcaactatttaatt-tcaactatacattg 235  Q
    ||||||||||| ||||||||| |||| |||||||||||||| ||| || ||| |||| ||||||| ||||| ||| |||| |||||||||    
11113015 ttgtacctacgaacaaaatccatcattaaatgtcatttttc-gtaggtgaaaattcataattcaattattttattgtcaattatacattg 11112927  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 97
Target Start/End: Complemental strand, 40453292 - 40453257
Alignment:
62 gcaagtgcatcaaggtccttggcacagggcctcaaa 97  Q
    ||||||||||||||| ||||||||||||||||||||    
40453292 gcaagtgcatcaaggcccttggcacagggcctcaaa 40453257  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 257
Target Start/End: Original strand, 32973526 - 32973628
Alignment:
156 cggacaaaatccgtcatgaaatgtcatttttctgtaagtaaaagttcagaattcaactatttaatt-tcaactatacattgtccgtaggtaaatgtcaat 254  Q
    ||||||| || |||||  ||||||||||||||||||  |||||||  | ||||| ||||||| ||| |||| |||||||| | ||| |||||||||| ||    
32973526 cggacaacattcgtcactaaatgtcatttttctgtagctaaaagtctaaaattctactattttattctcaattatacatttttcgttggtaaatgtctat 32973625  T
255 ttg 257  Q
    |||    
32973626 ttg 32973628  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 119
Target Start/End: Original strand, 2461419 - 2461476
Alignment:
62 gcaagtgcatcaaggtccttggcacagggcctcaaacttaaaggggctttaaaatttg 119  Q
    |||||||||||||||||||||||||| |||||| || ||  |||||| | ||||||||    
2461419 gcaagtgcatcaaggtccttggcacatggcctctaagtttgaggggcctcaaaatttg 2461476  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 263
Target Start/End: Original strand, 19116686 - 19116804
Alignment:
145 acttgtacctacggacaaaatccgtcatgaaatgtcatttttctgtaagtaaaagttcagaattcaacta-tttaatttcaactatacattgtccgtagg 243  Q
    |||||||||||||||||||||| |||   |||| |||||||| | || |||||| | ||||||||||||| |||| | |||| ||||||||||  |||||    
19116686 acttgtacctacggacaaaatctgtcgctaaatttcattttt-tttaggtaaaactccagaattcaactattttactatcaattatacattgtatgtagg 19116784  T
244 taaatgtcaatttgtctgtg 263  Q
    |||||||  |||| ||||||    
19116785 taaatgtagatttttctgtg 19116804  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 263
Target Start/End: Complemental strand, 26618654 - 26618587
Alignment:
197 aagttcagaattcaactatttaatt-tcaactatacattgtccgtaggtaaatgtcaatttgtctgtg 263  Q
    ||||| ||||||||||||||| | | ||||||||||||||||||||  |||||||| |||||| ||||    
26618654 aagtttagaattcaactattttactgtcaactatacattgtccgtatataaatgtctatttgtttgtg 26618587  T

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Target: scaffold0426 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0426
Description:

Target: scaffold0426; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 153 - 263
Target Start/End: Original strand, 2579 - 2689
Alignment:
153 ctacggacaaaatccgtcatgaaatgtcatttttctgtaagtaaaagttcagaattcaacta-tttaatttcaactatacattgtccgtaggtaaatgtc 251  Q
    ||||||||||||| |||||  || ||||||||||||||| |||||||| || ||||||| || |||| | |||| |||||||| |  ||| |||||||||    
2579 ctacggacaaaattcgtcactaa-tgtcatttttctgtaggtaaaagtccaaaattcaattattttactatcaattatacattttatgtatgtaaatgtc 2677  T
252 aatttgtctgtg 263  Q
     |||||| ||||    
2678 tatttgtgtgtg 2689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 200
Target Start/End: Original strand, 8760018 - 8760073
Alignment:
145 acttgtacctacggacaaaatccgtcatgaaatgtcatttttctgtaagtaaaagt 200  Q
    ||||||| |||||||||||||||||||  |||| |||||||| |||| ||||||||    
8760018 acttgtatctacggacaaaatccgtcactaaatatcatttttttgtaggtaaaagt 8760073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 263
Target Start/End: Original strand, 30860589 - 30860702
Alignment:
149 gtacctacggacaaaatccgtcatgaaatgtcatttttctgtaagtaaaagttcagaattcaactatttaattt-caactatacattgtccgtaggtaaa 247  Q
    ||||| ||||||||| || ||||  |||||||||||| |||||  |||||||  ||||||||||||||| | |  ||| ||||| |||||||||||||||    
30860589 gtaccaacggacaaa-tctgtcactaaatgtcatttt-ctgtagataaaagtctagaattcaactattttactaacaattataccttgtccgtaggtaaa 30860686  T
248 tgtcaatttgtctgtg 263  Q
    |||| |||||| ||||    
30860687 tgtctatttgtatgtg 30860702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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