View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20381_low_4 (Length: 604)
Name: NF20381_low_4
Description: NF20381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20381_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 19 - 591
Target Start/End: Original strand, 39784136 - 39784700
Alignment:
| Q |
19 |
ttatattctctctcattcttggcatctgatacattatattatttaatttaatttaattttgcagctcttcatgatgaatttctactttgttagactagtg |
118 |
Q |
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| T |
39784136 |
ttatattctctctcattcttggcatctgatacattatattatttaatttaattt-----tgcagctcttcatgatgaatttctactttgttagac----g |
39784226 |
T |
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| Q |
119 |
cagacaaccttttctattactctaaagttttaaacggata-gagagttttatacaatgcaattttgtatagttttttagattctaggcattgacattgca |
217 |
Q |
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| T |
39784227 |
cagacaaccttttctattactctaaagttttaaaaggataagagagttttatacaatgcaattttgtatagttttttagattctaggcattgacattgca |
39784326 |
T |
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| Q |
218 |
tcatgccaaaccagattcatcatgcatgaaacaaaacaaaactatcacacaaatgacatgatataactgtgaaaaatttaaagcaaaacatgtaacaaaa |
317 |
Q |
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| T |
39784327 |
tcatgccaaaccatattcatcatgcatgaaacaaaacaaaactatcacacaaatgacatgatataactgtgaaaaatttaaagcaaaacatgaaacaaaa |
39784426 |
T |
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| Q |
318 |
gtcaagttagaaaataagaaagcacataacataattccatagcataaggtagaagaaagaaatgaaatataggttctaaccttgtaagaattgaagtata |
417 |
Q |
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| T |
39784427 |
gtcaagttagaaaataagaaagcacataacataattccatagcataaggtagaagaaagaaatgaaatataggttctaaccttgtaagaattgaagtata |
39784526 |
T |
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| Q |
418 |
tatcacaattttctgctgaacaagaaaacaacagaacaagaagatctctgaagaaaaagcaagaaactcttccttaatcttttcnnnnnnncttgaggga |
517 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
39784527 |
tatcacaattttctgcagaacaagaaaacaacagaacaagaagatctctgaagaaaaagcaagaaactcttccttaatcttttcaaaaaaacttgaggga |
39784626 |
T |
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| Q |
518 |
caacctttttaaaatttgatgaaaactctgctaatatgctctcacattccccatcaagctctggctattatata |
591 |
Q |
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| T |
39784627 |
caacctttttaaaatttgatgaaaactctgctaatatgctctcacattccccatcaagctctggctattatata |
39784700 |
T |
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