View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20381_low_40 (Length: 267)
Name: NF20381_low_40
Description: NF20381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20381_low_40 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 36685195 - 36685079
Alignment:
| Q |
1 |
ttctcagacagaagcgccctgaccaaggttggaaggactctctctcgttccaacaattgttgacgacatatactaaggcttttttgattgcatcgtttaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
36685195 |
ttctcagacagaagcgccctgaccaaggttggaaggactctctctcgttccaacaattgttgacgacatatactaaggct-ttttgattgcatcgtttaa |
36685097 |
T |
|
| Q |
101 |
tgaaggcaaagtcaagga |
118 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
36685096 |
tgaaggcaaagtcaagga |
36685079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 124 - 256
Target Start/End: Complemental strand, 36685022 - 36684892
Alignment:
| Q |
124 |
atgactttataattttgataattttgattagggattatatatgactcttaaccattgtaccaagaaacctgggaggctactattttggagtacttcaagc |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
36685022 |
atgactttataattttgataattttgattagggcttatat--gacccttaaccattgtaccaagaaagctggtaggctactattttggagtacttcaagc |
36684925 |
T |
|
| Q |
224 |
ctcctcacatggaacacttcaacttgctgatga |
256 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |
|
|
| T |
36684924 |
ctcctcacatggaacacttcaacttgcagatga |
36684892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University