View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20381_low_45 (Length: 244)
Name: NF20381_low_45
Description: NF20381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20381_low_45 |
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Alignment Details
Target: chr6 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 237
Target Start/End: Complemental strand, 34443869 - 34443649
Alignment:
| Q |
17 |
catacaagaaagaagctcttattaaatgtaaacttccttttcttccggcaattaatcggtaacagtttcggtttccttgaggaaaacttctgagatctga |
116 |
Q |
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| T |
34443869 |
catacaagaaagaagctcttattaaatgtaaactgccatttcttccggcaattaatcggtaacagtttcggtttccttgaggaaaacttctgagatctga |
34443770 |
T |
|
| Q |
117 |
gagtggtaatggtagaataggattttttggatatgcatagtcagaagaaatgtttccgttaagtcctgtttgtatgtaagatccatctgtgccgtatttt |
216 |
Q |
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| T |
34443769 |
gaatgtatatggtagattaggattttttgggtatgcatagttagcagaaatgtttctgttaagtcctgtttgtatgtaagctccatctgtgccgtatttt |
34443670 |
T |
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| Q |
217 |
attttagttccatcatctgtg |
237 |
Q |
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|||| |||| ||||||||||| |
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| T |
34443669 |
atttcagttacatcatctgtg |
34443649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 17 - 224
Target Start/End: Complemental strand, 34437122 - 34436915
Alignment:
| Q |
17 |
catacaagaaagaagctcttattaaatgtaaacttccttttcttccggcaattaatcggtaacagtttcggtttccttgaggaaaacttctgagatctga |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
34437122 |
catacaagaaagaagctcttattaaatgtaaactgccttttgttccggcaattaatcggtaacagttccggtttccatgaggaaaacttctgagatctga |
34437023 |
T |
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| Q |
117 |
gagtggtaatggtagaataggattttttggatatgcatagtcagaagaaatgtttccgttaagtcctgtttgtatgtaagatccatctgtgccgtatttt |
216 |
Q |
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|||||| |||||||| ||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||| |||||||| |
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| T |
34437022 |
gagtggatatggtagattaggattttttgggtatgcatagtcagaagaaatgtttttgttaactcctgtttgtatgtaagatccatcagtgacgtatttt |
34436923 |
T |
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| Q |
217 |
attttagt |
224 |
Q |
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|||||||| |
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| T |
34436922 |
attttagt |
34436915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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