View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20381_low_48 (Length: 237)
Name: NF20381_low_48
Description: NF20381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20381_low_48 |
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Alignment Details
Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 37254297 - 37254172
Alignment:
| Q |
1 |
gaccatagccatttctttgcacaagccttatcgaacaacattcatcacaggtccgtccttgccttttctctcattctaatttcattctatccaacaaaca |
100 |
Q |
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| T |
37254297 |
gaccatggccatttctttgcacaagccttatcgaacaacattcatcacaggtccgtccttgccttttctctcattctaatttcattctatccaacaaaca |
37254198 |
T |
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| Q |
101 |
caattgcaaagctaacacctattatt |
126 |
Q |
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|||||||||||||||||||||||||| |
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| T |
37254197 |
caattgcaaagctaacacctattatt |
37254172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 121 - 222
Target Start/End: Complemental strand, 37253926 - 37253825
Alignment:
| Q |
121 |
attatttcattttcaatggaacaaatgtggctaacgtgttttaatttatcttggaaatgcttgttttatagacttgtttctttttacttgttattatctc |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37253926 |
attatttcattttcaatggaacaaatgtggctaacgtgttttaatttatcttggaaatgcttgttttatagacttgtttctttttacttgttattatctc |
37253827 |
T |
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| Q |
221 |
tt |
222 |
Q |
| |
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|| |
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| T |
37253826 |
tt |
37253825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 64 - 222
Target Start/End: Original strand, 52583501 - 52583659
Alignment:
| Q |
64 |
ttttctctcattctaatttcattctatccaacaaacacaattgcaaagctaacacctattatttcattttcaatggaacaaatgtggctaacgtgtttta |
163 |
Q |
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|||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
52583501 |
ttttttctcattctaatttcattcaatccaacaaacacaattgtaaagctaacacctattatttcattttttagggaacaaatgtggctaacgtgttttc |
52583600 |
T |
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| Q |
164 |
atttatcttggaaatgcttgttttatagacttgtttctttttacttgttattatctctt |
222 |
Q |
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|||| || ||||||||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
52583601 |
atttctcctggaaatgcttcttttctagacttgtttctttttacttgttattatctctt |
52583659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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