View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20381_low_6 (Length: 552)
Name: NF20381_low_6
Description: NF20381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20381_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 23 - 309
Target Start/End: Original strand, 4050351 - 4050636
Alignment:
| Q |
23 |
ggcatcaaagttgtacaactaagaagtccttgggtgttatgatttatgtgagagcaagggaatctttaagaggacgcgtaagcacactttggagttgaag |
122 |
Q |
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| T |
4050351 |
ggcatcaaagttgtacaactatgaagtccttgggtgttatgatttatgtgagagcaagggaatctttaagag-acgcataagcacactttggagttgaag |
4050449 |
T |
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| Q |
123 |
aggttatgattaaaaattgtggtaaaagaggtaaaagatgaaaaattgtgagacaacaaatgtagttggagggaagggcaaatagtaagatggttgatga |
222 |
Q |
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| T |
4050450 |
aagttatgataaaaacttgtggtaaaagaggtaaaagaggaaaaattgtgagacaacaaatgtagttggagggaagggcaaatagtaagatggttgatga |
4050549 |
T |
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| Q |
223 |
ttaaattgacatcaccatcagtttaaagtcttgtgggaagtatgctgctacctgttgtgtgaggcgtggggtatagctgcgagagga |
309 |
Q |
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| T |
4050550 |
ttaaattgacatcaccatcagtttaaagtcttctgggaagtgtgctgctacctgttgtgtgaggcatggggtatagctgcgagagga |
4050636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 372 - 536
Target Start/End: Original strand, 4050647 - 4050811
Alignment:
| Q |
372 |
gtattgttggggttacgcaagtgcatactagaggagcatatgcgcatccaaatctataaatagatagtttcaatacattgtttaatgagggaagtgaaac |
471 |
Q |
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|||||| ||||||| ||||| ||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
4050647 |
gtattgatggggttgcgcaattgcatacaagaggcccatgtgcgcatccaaatctataaatagatagtttcaatacattgtttaatgagaggtgtgaaac |
4050746 |
T |
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| Q |
472 |
aaactaagggttattaaatgggagagttctaaggagttcaaaggctaggaatttggtactttttg |
536 |
Q |
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| T |
4050747 |
aaactatgggttatgaaatgggagaattctatggaatttacaggctaggaattcggtactttttg |
4050811 |
T |
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