View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20381_low_7 (Length: 548)
Name: NF20381_low_7
Description: NF20381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20381_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 170 - 516
Target Start/End: Original strand, 52080388 - 52080734
Alignment:
| Q |
170 |
atattgctgccaaacgaatcacattatctgcacttggaaacaaagccaaaccatagatcgtcaaagccaacatatccataaacttttttccattctccat |
269 |
Q |
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| T |
52080388 |
atattgctgccaaactaatcacattatctgcacttggaaacaaagctaaaccatagatcgtcaaagccaacatatccataaacttttttccattctccat |
52080487 |
T |
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| Q |
270 |
tattagctaaggctttcaacagatcctctaagtactgccttttgataccactggttgtattcatgttttccttacctataagatgggtcatagaattgta |
369 |
Q |
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| T |
52080488 |
tattagctaaggctttcaacagatcctctaagtactgccttttgataccactggttgtattcgtgttttccttacctataaggtgggtcatagaattgta |
52080587 |
T |
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| Q |
370 |
ataagcatgaaagtgcctctatctaaacatctacccttaacaaatccaagatctttccatacttcttcttaaagtcatcacgttcttcacaagttaaccg |
469 |
Q |
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| T |
52080588 |
ataagcaggaaagtgcctctatctaaacatccacccttaacaaatccaagatctttccatacttcttcttaaagtcatcacgttcttcacaagttaaccg |
52080687 |
T |
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| Q |
470 |
ctcattaaagagattcaaactctcaatatctagtttcttgatcatga |
516 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
52080688 |
ctcaataaagagattcaaactctcaatatctagtttcttgatcatga |
52080734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 11 - 172
Target Start/End: Original strand, 52078852 - 52079019
Alignment:
| Q |
11 |
cagagagactaaactaatcaatctttggataagcagcgtcgtctctaagattttgaatattgttctgtgtgaagtataaaattggtattcaaattttgta |
110 |
Q |
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| T |
52078852 |
cagagagattaaactaatcaatcttcagataatcagtgtcgtctctaagattttgaatattattgtgtgtgaaatataaaattggtattataattttgta |
52078951 |
T |
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| Q |
111 |
ttaagtaataccacgtacgtacgcacg------ctcatatacacacgtgtgaacacatacttaaaata |
172 |
Q |
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||||||||||||| ||||||||||||| | |||| |||||||||| |||||| |||||||||| |
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| T |
52078952 |
ttaagtaataccatgtacgtacgcacgcacgcacacatacacacacgtgtaaacacacacttaaaata |
52079019 |
T |
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