View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20381_low_8 (Length: 527)
Name: NF20381_low_8
Description: NF20381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20381_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 10 - 508
Target Start/End: Original strand, 5476070 - 5476577
Alignment:
| Q |
10 |
ataatacttgtattagtagtgcttatgctataaatgtcaaattaattatttatccaatcggaaactttgtaggggactgatgaaacagaggcgggaaata |
109 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
5476070 |
ataatacttatattagtagtgcttatgctatatatgtctaattgattatttatccaatcggaaactttgtaggggactgatgaaacagaggcaggaaata |
5476169 |
T |
|
| Q |
110 |
ggattagtgagttacctgactgcatactcctccacatgatgagttttcttgaagtacaagacgctgttcggacttgcatcttgtctaaacgatggaagga |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5476170 |
ggattagtgagttacctgactgcatactcctccacataatgagttttcttgaagcacgagatgctgttcggacttgcatcttgtctaaacgatggaagga |
5476269 |
T |
|
| Q |
210 |
tctttgcaaacgtctcactactctcacatatattccgtcatgggatgaaaatagttttaagaactttaagtcttgggttctgacttgtagagatcaatca |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
5476270 |
tctttgcaaacgtctcactactctcacatatattccgtcgtgggatgaaaatagttttaagaactttaagtcttgggttctgtctagtagagatcaatca |
5476369 |
T |
|
| Q |
310 |
tgttccttgtgtaatcttactattgattctcagtttgaggaagacgaagaagacctacatacactcatacaatatgctctttttcacaatcttcagaact |
409 |
Q |
| |
|
||||| |||| ||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5476370 |
tgttcactgtggaatcttactattgatactcagtttcaggaaggtgaagaagacctacatacactcatacaatatgctctttttcacaatcttcagaact |
5476469 |
T |
|
| Q |
410 |
tgaatattaagataaatccaagcttgactcccaaatct---------cctttaattttagcctctcactccttgacattccttgagctttcttatcgtag |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
5476470 |
tgaatattaagataaatccaagcttgactcccaaatctgatttactccctttaattttagcctctaactccttgacattccttgagctttcttatcgtag |
5476569 |
T |
|
| Q |
501 |
gggtggta |
508 |
Q |
| |
|
|||||||| |
|
|
| T |
5476570 |
gggtggta |
5476577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 12 - 504
Target Start/End: Original strand, 8403527 - 8404034
Alignment:
| Q |
12 |
aatacttgtattagtagtgcttatgctataaatgtcaaattaattatttatccaatcggaaactttgtaggggactgatgaaacagaggcgg------ga |
105 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||| |||||||||| || |
|
|
| T |
8403527 |
aatacttatattcgtagtgcttatgctataaatgtttaattaattatttatccaatgagaaactttgtagggaactgaagaaacagaggaaaatagaaga |
8403626 |
T |
|
| Q |
106 |
aataggattagtgagttacctgactgcatactcctccacatgatgagttttcttgaagtacaagacgctgttcggacttgcatcttgtctaaacgatgga |
205 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8403627 |
aataggattggtgagttacctgactgcatactcctccacataatgagttttcttgaagcacgagacgctgttcggacttgcatcttgtctaaacgatgga |
8403726 |
T |
|
| Q |
206 |
aggatctttgcaaacgtctcactactctcacatatattccgtcatgggatgaaaatagttttaagaactttaagtcttgggttctgacttgtagagatca |
305 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||| |||||||||||||| || |||||||||| |
|
|
| T |
8403727 |
aggatctttgcaaacgtctcactactctcgcatatattccgtcgtgggatgaaagtagttttaagaactttcagtcttgggttctgtctagtagagatca |
8403826 |
T |
|
| Q |
306 |
atcatgttccttgtgtaatcttactattgattctcagtttgaggaagacgaagaagacctacatacactcatacaatatgctctttttcacaatcttcag |
405 |
Q |
| |
|
|||||||||| || ||||||| ||| ||||| |||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
8403827 |
atcatgttccctgcgtaatctgactgttgatactcagtttctggaaggtgaagaagacctacatacactcgtacaatatgctctttttcacaatcttcag |
8403926 |
T |
|
| Q |
406 |
aacttgaatattaagataaatccaagcttgactcccaaatct---------cctttaattttagcctctcactccttgacattccttgagctttcttatc |
496 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| || |||||||| ||| |||||||||| |||||||| |||||||||||||||| |
|
|
| T |
8403927 |
cacttgaatattaagataaatcaaagcttgactcccaaacctgagttactacctttaatcttaacctctcactctttgacatttcttgagctttcttatc |
8404026 |
T |
|
| Q |
497 |
gtaggggt |
504 |
Q |
| |
|
|||||||| |
|
|
| T |
8404027 |
gtaggggt |
8404034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 104 - 493
Target Start/End: Complemental strand, 8359663 - 8359265
Alignment:
| Q |
104 |
gaaataggattagtgagttacctgactgcatactcctccacatgatgagttttcttgaagtacaagacgctgttcggacttgcatcttgtctaaacgatg |
203 |
Q |
| |
|
|||||| ||| ||| ||||||||||||||||||| |||||||| ||||||||| | ||| | |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8359663 |
gaaatatgatcagtaagttacctgactgcatactgctccacataatgagttttttgaaagctcgagacgctgttcgaacttgcatcttgtctaaacgatg |
8359564 |
T |
|
| Q |
204 |
gaaggatctttgcaaacgtctcactactctcacatatattccgtcatgggatgaaaatagttttaagaactttaagtcttgggttctgacttgtagagat |
303 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| || | || | |||||||||||||||| |||||||||| | || |||||||| |
|
|
| T |
8359563 |
gaaggatctttgcaaacgtctccctactctcacatatattccatctt---ctgcccaaagttttaagaactttagctcttgggttcggtctagtagagat |
8359467 |
T |
|
| Q |
304 |
caatcatgttccttgtgtaatcttactattg---attctcagtttga-ggaagacgaagaagacctacatacactcatacaatatgctctttttcacaat |
399 |
Q |
| |
|
|| ||||||||| | |||||||||||||| ||| | | | | ||||| ||| ||||||| |||| ||| ||||||||| ||||| ||||||| |
|
|
| T |
8359466 |
cactcatgttccctacttaatcttactattgaaaattattatataaatggaag-tgaatcagacctatataccctcctacaatatgttctttctcacaat |
8359368 |
T |
|
| Q |
400 |
cttcagaacttgaatattaagataaatccaagcttgactcccaaatct---------cctttaattttagcctctcactccttgacattccttgagcttt |
490 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||| | |||||||||| | |||||||| || | ||||||||| |||||||| |||||||||| |
|
|
| T |
8359367 |
cttcagcacttgaatattatgataaatccaagcattactcccaaatatgagttcctccctttaatctttggctctcactctttgacatttcttgagcttt |
8359268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 104 - 401
Target Start/End: Complemental strand, 8356617 - 8356323
Alignment:
| Q |
104 |
gaaataggattagtgagttacctgactgcatactcctccacatgatgagttttcttgaagtacaagacgctgttcggacttgcatcttgtctaaacgatg |
203 |
Q |
| |
|
||||||||||||||||||| || |||||| || | ||||||| ||||||||||||||| | |||| | |||||||||||||||||||||||||||||| |
|
|
| T |
8356617 |
gaaataggattagtgagttgccagactgcttattggtccacatattgagttttcttgaagcagaagatgttgttcggacttgcatcttgtctaaacgatg |
8356518 |
T |
|
| Q |
204 |
gaaggatctttgcaaacgtctcactactctcacatatattccgtcatgggatgaaaatagttttaagaactttaagtcttgggttctgacttgtagagat |
303 |
Q |
| |
|
|||||||||||||||||| ||| ||| |||||||||||||||||| | | | || ||||||||||||||| | |||||||||||| ||||||||||| |
|
|
| T |
8356517 |
gaaggatctttgcaaacgcctccctattctcacatatattccgtcttcagctcaa---agttttaagaacttttattcttgggttctgtcttgtagagat |
8356421 |
T |
|
| Q |
304 |
caatcatgttccttgtgtaatcttactattgattctcagtttgaggaagacgaagaagacctacatacactcatacaatatgctctttttcacaatct |
401 |
Q |
| |
|
|| ||||||||| | |||||||||||| | | | || |||||| ||||||||||| ||| |||| ||||||| ||||||| ||||||||| |
|
|
| T |
8356420 |
cattcatgttccctactaaatcttactattccattttatatttaggaaggtgaagaagacctgtataaactcgtacaatacgctctttctcacaatct |
8356323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 104 - 246
Target Start/End: Complemental strand, 9139103 - 9138961
Alignment:
| Q |
104 |
gaaataggattagtgagttacctgactgcatactcctccacatgatgagttttcttgaagtacaagacgctgttcggacttgcatcttgtctaaacgatg |
203 |
Q |
| |
|
||||||||||| ||||||| |||||||||||| | |||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
9139103 |
gaaataggatttgtgagttgcctgactgcatattgctccacatattgagttttcttgaagcacaagatgctgttcggacttgcatcttgtctaaacggtg |
9139004 |
T |
|
| Q |
204 |
gaaggatctttgcaaacgtctcactactctcacatatattccg |
246 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||| |||| |
|
|
| T |
9139003 |
gaaggatctttgcaaatgcctcactactctcacatatactccg |
9138961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 104 - 447
Target Start/End: Complemental strand, 43144976 - 43144636
Alignment:
| Q |
104 |
gaaataggattagtgagttacctgactgcatactcctccacatgatgagttttcttgaagtacaagacgctgttcggacttgcatcttgtctaaacgatg |
203 |
Q |
| |
|
||||| ||||||||||||| || ||||||||||| ||||| || |||||||||||||||| || ||||| |||||| ||||||||||||||||| ||||| |
|
|
| T |
43144976 |
gaaattggattagtgagttgcccgactgcatactgctccatataatgagttttcttgaagcacgagacgttgttcgaacttgcatcttgtctaagcgatg |
43144877 |
T |
|
| Q |
204 |
gaaggatctttgcaaacgtctcactactctcacatatattccgtcatgggatgaaaatagttttaagaactttaagtcttgggttctgacttgtagagat |
303 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |||||||| | | | | | || | | || | | ||||||||||||| || | ||||||||||| |
|
|
| T |
43144876 |
gaaggatctttgcaaacgtgtcactactctcaaatatattctgccgtctgctcaa---actcttgatagctttaagtcttggattttttcttgtagagat |
43144780 |
T |
|
| Q |
304 |
caatcatgttccttgtgtaatcttactattgattctcagtttgaggaagacgaagaagacctacatacactcatacaatatgctctttttcacaatcttc |
403 |
Q |
| |
|
|| || |||||| | | ||||||||||||| | | | || | ||| ||||||| |||| | |||||||| |||||||||||||||||||| ||| |
|
|
| T |
43144779 |
cactcttgttccctatttaatcttactattagtacaaggattcaacaaggtgaagaagccctatacccactcatagaatatgctctttttcacaatgttc |
43144680 |
T |
|
| Q |
404 |
agaacttgaatattaagataaatccaagcttgactcccaaatct |
447 |
Q |
| |
|
|| ||||||| ||||| ||||| |||||||| | ||||||||| |
|
|
| T |
43144679 |
agcacttgaaaattaatataaacccaagctttagacccaaatct |
43144636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 85 - 248
Target Start/End: Original strand, 8410656 - 8410820
Alignment:
| Q |
85 |
actgatgaaacagaggcgggaaa-taggattagtgagttacctgactgcatactcctccacatgatgagttttcttgaagtacaagacgctgttcggact |
183 |
Q |
| |
|
||||| || ||||| |||||||| ||||||||||||||| ||||||||| || | ||| | || ||||||||||||||| || ||| |||||||||||| |
|
|
| T |
8410656 |
actgaagacacagatgcgggaaaataggattagtgagttgcctgactgcttattgctctagatattgagttttcttgaagcacgagatgctgttcggact |
8410755 |
T |
|
| Q |
184 |
tgcatcttgtctaaacgatggaaggatctttgcaaacgtctcactactctcacatatattccgtc |
248 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
8410756 |
tgcatcttgtctaaacggtggaaggatctttgcaaacgcctcactactctcacatatactccgtc |
8410820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 105 - 248
Target Start/End: Original strand, 8416330 - 8416473
Alignment:
| Q |
105 |
aaataggattagtgagttacctgactgcatactcctccacatgatgagttttcttgaagtacaagacgctgttcggacttgcatcttgtctaaacgatgg |
204 |
Q |
| |
|
|||||||||||||||||| ||||||||| || | ||||| || ||||||||||||||| || ||| |||||||||||||| |||||||||||||| ||| |
|
|
| T |
8416330 |
aaataggattagtgagttgcctgactgcttattgctccatatattgagttttcttgaagcacgagatgctgttcggacttgtatcttgtctaaacggtgg |
8416429 |
T |
|
| Q |
205 |
aaggatctttgcaaacgtctcactactctcacatatattccgtc |
248 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
8416430 |
aaggatctttgcaaacgcctcactactctcacatatactccgtc |
8416473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 105 - 241
Target Start/End: Complemental strand, 8036498 - 8036362
Alignment:
| Q |
105 |
aaataggattagtgagttacctgactgcatactcctccacatgatgagttttcttgaagtacaagacgctgttcggacttgcatcttgtctaaacgatgg |
204 |
Q |
| |
|
|||||||||||||||||| |||||||||||| | |||||||| |||| |||||||||| |||||| ||||||| |||||| |||||||||||||| ||| |
|
|
| T |
8036498 |
aaataggattagtgagttgcctgactgcatattgctccacatactgaggtttcttgaagcacaagatgctgttcagacttgtatcttgtctaaacggtgg |
8036399 |
T |
|
| Q |
205 |
aaggatctttgcaaacgtctcactactctcacatata |
241 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8036398 |
aaggatctttgcaaacgcgtcactactctcacatata |
8036362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 107 - 248
Target Start/End: Complemental strand, 8041913 - 8041772
Alignment:
| Q |
107 |
ataggattagtgagttacctgactgcatactcctccacatgatgagttttcttgaagtacaagacgctgttcggacttgcatcttgtctaaacgatggaa |
206 |
Q |
| |
|
||||||||||||| || |||||||||||| | ||||||| || |||||||||||| || ||| |||||||||||||| |||||||||||||| ||||| |
|
|
| T |
8041913 |
ataggattagtgatttgcctgactgcatattgctccacacattgggttttcttgaagcacgagatgctgttcggacttgtatcttgtctaaacggtggaa |
8041814 |
T |
|
| Q |
207 |
ggatctttgcaaacgtctcactactctcacatatattccgtc |
248 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
8041813 |
ggatctttgcaaacgcgtcactactctcacatatactccgtc |
8041772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 333
Target Start/End: Original strand, 8410843 - 8410914
Alignment:
| Q |
262 |
agttttaagaactttaagtcttgggttctgacttgtagagatcaatcatgttccttgtgtaatcttactatt |
333 |
Q |
| |
|
|||||||||||||||| ||||||||||||| | |||||||||| |||| ||| || ||||||||||||| |
|
|
| T |
8410843 |
agttttaagaactttatgtcttgggttctgtccagtagagatcactcatattcactgcttaatcttactatt |
8410914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 501
Target Start/End: Original strand, 33084193 - 33084246
Alignment:
| Q |
448 |
cctttaattttagcctctcactccttgacattccttgagctttcttatcgtagg |
501 |
Q |
| |
|
|||||||| || | ||||||||| |||||||| ||||||||||||||| ||||| |
|
|
| T |
33084193 |
cctttaatctttggctctcactctttgacatttcttgagctttcttatggtagg |
33084246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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