View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20382_high_10 (Length: 486)
Name: NF20382_high_10
Description: NF20382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20382_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 469
Target Start/End: Original strand, 44973544 - 44974009
Alignment:
| Q |
1 |
ttgttaaataaaatgtatatcatttttgcatttataaacacaaaaggctcacggactatatatataagtgctgattgcttgtaatacagtataattccat |
100 |
Q |
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| T |
44973544 |
ttgttaaataaaatgtatatgattgttgcatttataaacacaaaaggctcacggactatata----agtgctgattgcttgtaatacagtataattccat |
44973639 |
T |
|
| Q |
101 |
gataggaaaaatagtaggataataatgcaaccaccaaaaggtacaaaacatttttaattattcctttatttttgtctctctttatcatccacaccaacgt |
200 |
Q |
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| T |
44973640 |
gataggaaaaatagtaggataataatgcaaccaccaaaaggtacaaaacatttttaattattcctttatttttgtctctctttatcatccacaccaacgt |
44973739 |
T |
|
| Q |
201 |
tatacattcc-aacgcatggaaacacaaacactcattgttccatcccaccaaaaccttaatttcactccaacttctctcccttagctatggaaaaccaac |
299 |
Q |
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| T |
44973740 |
tatactctcccaacgcatggaaacacaaacactcattgttccatcccaccaaaaccttaatttcactccaacttctctcccttagctatggaaaaccaac |
44973839 |
T |
|
| Q |
300 |
catcaccacttccaccaaaaacatacaaactaacagcaacttcaatctcttactccaaaaacctacaaacaaacaactccatcattgcaccatttctctt |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
44973840 |
catcaccacttccaccaaaaacatacaaactaacagcaacttcaatctcttactccaaaaacctacaaacaaacaacaccatcattgcaccatttctctt |
44973939 |
T |
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| Q |
400 |
cttcaaacattgtacaccaannnnnnnaaactacatcctcaaagatgtttccctcacagcatacccttct |
469 |
Q |
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| T |
44973940 |
cttcaaacattgtacaccaacccccccaaactacatcctcaaagatgtttccctcacagcatacccttct |
44974009 |
T |
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