View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20382_high_12 (Length: 473)

Name: NF20382_high_12
Description: NF20382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20382_high_12
NF20382_high_12
[»] chr4 (6 HSPs)
chr4 (320-473)||(41972991-41973144)
chr4 (1-128)||(41972761-41972889)
chr4 (186-271)||(41972901-41972986)
chr4 (198-463)||(15993163-15993415)
chr4 (48-128)||(15992991-15993070)
chr4 (407-473)||(4049614-4049680)
[»] chr2 (8 HSPs)
chr2 (182-473)||(14461905-14462197)
chr2 (207-382)||(14815522-14815697)
chr2 (182-424)||(15089213-15089450)
chr2 (333-461)||(4259516-4259643)
chr2 (188-261)||(4259711-4259784)
chr2 (391-469)||(14816126-14816206)
chr2 (333-461)||(14128179-14128306)
chr2 (71-128)||(14461770-14461827)
[»] chr5 (6 HSPs)
chr5 (188-385)||(14050456-14050654)
chr5 (13-124)||(15567169-15567281)
chr5 (188-461)||(34152246-34152518)
chr5 (202-295)||(15567372-15567465)
chr5 (12-109)||(34152621-34152719)
chr5 (407-443)||(41695756-41695792)
[»] chr7 (4 HSPs)
chr7 (194-461)||(6651034-6651300)
chr7 (201-473)||(36714031-36714303)
chr7 (7-127)||(36714356-36714477)
chr7 (48-120)||(6651398-6651470)
[»] chr8 (4 HSPs)
chr8 (239-471)||(33468505-33468737)
chr8 (206-263)||(23772237-23772294)
chr8 (196-266)||(4780886-4780956)
chr8 (46-109)||(23772053-23772116)
[»] scaffold0001 (2 HSPs)
scaffold0001 (253-473)||(67903-68122)
scaffold0001 (7-126)||(68220-68335)
[»] chr1 (1 HSPs)
chr1 (332-461)||(18285503-18285631)
[»] chr3 (7 HSPs)
chr3 (55-128)||(29541291-29541364)
chr3 (279-380)||(27856795-27856896)
chr3 (352-461)||(8966886-8966988)
chr3 (333-453)||(35544389-35544507)
chr3 (182-267)||(29541131-29541213)
chr3 (182-262)||(28727869-28727949)
chr3 (333-385)||(28728020-28728072)
[»] chr6 (1 HSPs)
chr6 (332-390)||(18506611-18506669)


Alignment Details
Target: chr4 (Bit Score: 126; Significance: 9e-65; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 320 - 473
Target Start/End: Original strand, 41972991 - 41973144
Alignment:
Q  320 taatgactgttataatcatgttttgtgccttaagcaaattccacttaaggtcaatatttttatttgacattatttgttcctgaatagtagcaacaaaaat 419  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  41972991 taatgaccgttataatcatgttttgtgccttaagaaaattccacttaaggtcaatatttttatttgacattatttgttcttgaatagtagcaacaaaaat 41973090  T
Q  420 gaatccgtttagcagaaacattttggattataatgatactttgttcacggctac 473  Q
    ||||| |||||| ||||||||||||||||||||||||||||||| |||| ||||    
T  41973091 gaatcagtttagtagaaacattttggattataatgatactttgtgcacgactac 41973144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 41972761 - 41972889
Alignment:
Q  1 agatatgtgggg-gatgaggcttctactttgttttggaaggactcaggttagatggtgtaccttttgatgttagatatgctaggttgtttgatcttgttg 99  Q
    |||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41972761 agatatgtggggggatgaggcttttactttgttttggaaggaatcaggttagatggtgtaccttttgatgttagatatgctaggttgtttgatcttgttg 41972860  T
Q  100 tcaataaattatccacaattgcggagatg 128  Q
    |||||||||||| || | |||||||||||    
T  41972861 tcaataaattattcagagttgcggagatg 41972889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 186 - 271
Target Start/End: Original strand, 41972901 - 41972986
Alignment:
Q  186 gggtgtgtggagcaactgtcacttgttgctttgcaggttcgtgtgactgacatgtggatttagaagcttcattcttcccatcgata 271  Q
    ||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  41972901 gggtgtgtggagcagttgtcacttgttgttttgcaggttcgtgtgactgacatgtggatttggaagcttcattcttcccatcgata 41972986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 198 - 463
Target Start/End: Original strand, 15993163 - 15993415
Alignment:
Q  198 caactgtcacttgttgctttgcaggttcgtgtgactgacatgtggatttagaagcttcattcttcccatcgatacataattaaaaatgcttataatcttt 297  Q
    ||||| || ||||||| |||||||||| |||||||| ||| |||||||| ||||||||||| |||||||||||||||| | || |            |||    
T  15993163 caactatctcttgttggtttgcaggttggtgtgactaacaggtggatttggaagcttcattattcccatcgatacatagtcaata------------ttt 15993250  T
Q  298 tgataacatcaaaatttagcgttaatgactgttataatcatgttttgtgccttaagcaaattccacttaaggtcaatatttttatttgacattatttgtt 397  Q
    ||| ||| || ||| |||||||| ||||| ||| || || ||||||||| |||||||||||||||||||||| |||||||||||||||    | ||||||    
T  15993251 tgacaacttctaaagttagcgttgatgaccgttctagtcgtgttttgtggcttaagcaaattccacttaaggccaatatttttatttg---gtgtttgtt 15993347  T
Q  398 cctgaatag--tagcaacaaaaatgaatccgtttagcagaaacattttggattataatgatactttgt 463  Q
    |||||||||  ||| |  |||||  |||  |||||| ||||||||||||||||| |||||| ||||||    
T  15993348 cctgaatagattagtagtaaaaaataatttgtttaggagaaacattttggattacaatgattctttgt 15993415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 15992991 - 15993070
Alignment:
Q  48 ttagatggtgtaccttttgatgttagatatgctaggttgtttgatcttgttgtcaataaattatccacaattgcggagatg 128  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||||||  || | ||||||||||||| ||| |||||||    
T  15992991 ttagatggtgtatcttttgatgttagatatgctaagttgtttgatcttgcagt-agtaaattatccacagttgtggagatg 15993070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 407 - 473
Target Start/End: Original strand, 4049614 - 4049680
Alignment:
Q  407 tagcaacaaaaatgaatccgtttagcagaaacattttggattataatgatactttgttcacggctac 473  Q
    |||||||||||||||||  |||||| ||||||||||| ||||| |||||| |||||| |||| ||||    
T  4049614 tagcaacaaaaatgaatatgtttagaagaaacattttcgattacaatgattctttgtgcacgactac 4049680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 7e-44; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 182 - 473
Target Start/End: Original strand, 14461905 - 14462197
Alignment:
Q  182 gagggggtgtgtggagcaactgtcacttgttgctttgcaggttcg-tgtgactgacatgtggatttagaagcttcattcttcccatcgatacataattaa 280  Q
    ||||| ||||| |||||||||||||||| ||| |||| ||||| | ||||||||| ||||||||||||||||||||||||| ||||| ||||||| | ||    
T  14461905 gagggagtgtgcggagcaactgtcacttattgttttgtaggttggatgtgactgaaatgtggatttagaagcttcattctttccatcaatacatagtcaa 14462004  T
Q  281 aaatgc-ttataatcttttgataacatcaaaatttagcgttaatgactgttataatcatgttttgtgccttaagcaaattccacttaaggtcaatatttt 379  Q
    || ||| |||||||||||||| ||| |   |  || |  || |||| |||| ||||||||||||||| |||||||||||| |||||||||||||||||||    
T  14462005 aagtgctttataatcttttgacaacttttgaggttggtattgatgagtgttttaatcatgttttgtggcttaagcaaatttcacttaaggtcaatatttt 14462104  T
Q  380 tatttgacattatttgttcctgaatag--tagcaacaaaaatgaatccgtttagcagaaacattttggattataatgatactttgttcacggctac 473  Q
    ||||||    | || ||||||||||||  || | |||||||| |||  |||||| |||||||| |||||||| ||| || |||||| |||||||||    
T  14462105 tatttg---gtgttcgttcctgaatagattaacgacaaaaattaatttgtttaggagaaacatattggattacaattattctttgtgcacggctac 14462197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 207 - 382
Target Start/End: Original strand, 14815522 - 14815697
Alignment:
Q  207 cttgttgctttgcaggttcgtgtgactgacatgtggatttagaagcttcattcttcccatcgatacataattaaaaatgcttataatcttttgataacat 306  Q
    ||||||| |||||||||| |||||||||| |||||||||| |||||||| ||||||||||  ||||| | | |||| ||||||||||  ||||||||| |    
T  14815522 cttgttgttttgcaggttggtgtgactgatatgtggatttggaagcttctttcttcccataaatacacagtcaaaagtgcttataattatttgataactt 14815621  T
Q  307 caaaatttagcgttaatgactgttataatcatgttttgtgccttaagcaaattccacttaaggtcaatatttttat 382  Q
    |  || || | ||  ||||  ||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  14815622 ctgaagttggtgtagatgatcgttttaatcatgttttgtggcttaagcaaataccacttaaggtcaatatttttat 14815697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 182 - 424
Target Start/End: Original strand, 15089213 - 15089450
Alignment:
Q  182 gagggggtgtgtggagcaactgtcacttgttgctttgcaggttcgtgtgactgacatgtggatttagaagcttcattcttcccatcgatacataattaaa 281  Q
    ||||| |||| |||||||  |||||||||||| |||||||||| |||| || || | |||| ||| ||||||| ||||||||||||||||||   |||||    
T  15089213 gagggagtgtatggagcagttgtcacttgttgttttgcaggtttgtgttaccgataagtggttttggaagctttattcttcccatcgatacacggttaaa 15089312  T
Q  282 aatgcttataatcttttgataacatcaaaatttagcgttaatgactgttataatcatgttttgtgccttaagcaaattccacttaaggtcaatattttta 381  Q
    | |||||||||||||| |||||| ||  || || | ||| ||||  ||| ||||||||||||||| |||||  |||||||    ||||||||||||||||    
T  15089313 agtgcttataatctttcgataacttctgaagttggtgttgatgaacgttttaatcatgttttgtggcttaaaaaaattcc----aaggtcaatattttta 15089408  T
Q  382 tttgacattatttgttcctga--atagtagcaacaaaaatgaatc 424  Q
    ||||||    ||||||||| |  ||| ||||||||||||||||||    
T  15089409 tttgac---gtttgttccttaatatattagcaacaaaaatgaatc 15089450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 333 - 461
Target Start/End: Complemental strand, 4259643 - 4259516
Alignment:
Q  333 aatcatgttttgtgccttaagcaaattccacttaaggtcaatatttttatttgacattatttgttcctgaatag--tagcaacaaaaatgaatccgttta 430  Q
    ||||||||||| || |||||||||||||    |||||| |||||||||||||| ||||   |||||||||||||  |||||||||||||||||  |||||    
T  4259643 aatcatgttttatggcttaagcaaattctgtgtaaggttaatatttttatttggcatt---tgttcctgaatagattagcaacaaaaatgaatatgttta 4259547  T
Q  431 gcagaaacattttggattataatgatacttt 461  Q
    | ||||| || ||||||||||||||| ||||    
T  4259546 ggagaaatatcttggattataatgattcttt 4259516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 188 - 261
Target Start/End: Complemental strand, 4259784 - 4259711
Alignment:
Q  188 gtgtgtggagcaactgtcacttgttgctttgcaggttcgtgtgactgacatgtggatttagaagcttcattctt 261  Q
    ||||||||||||||| | |||||||| |||||||||| |||| ||||||||||||||||  |||||||||||||    
T  4259784 gtgtgtggagcaacttttacttgttgttttgcaggttggtgtaactgacatgtggatttgaaagcttcattctt 4259711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 391 - 469
Target Start/End: Original strand, 14816126 - 14816206
Alignment:
Q  391 atttgttcctgaatag--tagcaacaaaaatgaatccgtttagcagaaacattttggattataatgatactttgttcacgg 469  Q
    ||||||| ||||||||  ||| |||||||||||||| |||||| ||||||||||||||||| |||||| |||||| |||||    
T  14816126 atttgtttctgaatagattagtaacaaaaatgaatctgtttaggagaaacattttggattacaatgattctttgtgcacgg 14816206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 333 - 461
Target Start/End: Complemental strand, 14128306 - 14128179
Alignment:
Q  333 aatcatgttttgtgccttaagcaaattccacttaaggtcaatatttttatttgacattatttgttcctgaat--agtagcaacaaaaatgaatccgttta 430  Q
    ||||||||||| || |||||||||||||| |||| | ||||||||||||||||    | |||||||| ||||  | ||||||| || |||||||  ||||    
T  14128306 aatcatgttttatggcttaagcaaattccgcttacgatcaatatttttatttg---gtgtttgttccagaataaattagcaactaagatgaatctcttta 14128210  T
Q  431 gcagaaacattttggattataatgatacttt 461  Q
    | ||||| || ||||||||||||||| ||||    
T  14128209 ggagaaatatcttggattataatgattcttt 14128179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 71 - 128
Target Start/End: Original strand, 14461770 - 14461827
Alignment:
Q  71 tagatatgctaggttgtttgatcttgttgtcaataaattatccacaattgcggagatg 128  Q
    |||||||| ||||||||||||||||  ||| ||||||||||||||||||| |||||||    
T  14461770 tagatatgataggttgtttgatcttcctgttaataaattatccacaattgtggagatg 14461827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 4e-39; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 188 - 385
Target Start/End: Original strand, 14050456 - 14050654
Alignment:
Q  188 gtgtgtggagcaactgtcacttgttgctttgcaggttcgtgtgactgacatgtggatttagaagcttcattcttcccatcgatacataatta-aaaatgc 286  Q
    |||||||||||| ||||||||||||  |||  ||||| |||||||||||| ||| |||| |||||||||||||||||||||||||  | | | |||||||    
T  14050456 gtgtgtggagcagctgtcacttgttattttataggttggtgtgactgacaggtgaatttggaagcttcattcttcccatcgatactcagtaataaaatgc 14050555  T
Q  287 ttataatcttttgataacatcaaaatttagcgttaatgactgttataatcatgttttgtgccttaagcaaattccacttaaggtcaatatttttatttg 385  Q
    |||||||||||||| ||| |   || || | ||| ||||||||| || ||||||| |||| ||||||||||||||||||||||||||||||||| ||||    
T  14050556 ttataatcttttgaaaacttgtgaaattggtgttgatgactgttttagtcatgttatgtggcttaagcaaattccacttaaggtcaatatttttgtttg 14050654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 13 - 124
Target Start/End: Original strand, 15567169 - 15567281
Alignment:
Q  13 gatgaggcttctactttgttttggaaggactca-ggttagatggtgtaccttttgatgttagatatgctaggttgtttgatcttgttgtcaataaattat 111  Q
    |||||||||||||||||||||||||||||| || ||||||||| |||| |||||||||||||||||| ||||||||||| |||| |||| ||||||||||    
T  15567169 gatgaggcttctactttgttttggaaggacccatggttagatgatgtatcttttgatgttagatatgttaggttgtttgctctttttgttaataaattat 15567268  T
Q  112 ccacaattgcgga 124  Q
    ||||| |||||||    
T  15567269 ccacagttgcgga 15567281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 188 - 461
Target Start/End: Complemental strand, 34152518 - 34152246
Alignment:
Q  188 gtgtgtggagcaactgtcacttgttgctttgcaggttcgtgtgactgacatgtggatttagaagcttcattcttcccatcgatacataattaaaaatgct 287  Q
    ||||| |||||| || ||||||||||  ||||||||| |||||| ||||| |||||||| |||||||||||||||| || | ||||   ||||||  |||    
T  34152518 gtgtgcggagcagctttcacttgttgtattgcaggttggtgtgaatgacaggtggatttggaagcttcattcttcctataggtacacggttaaaagcgct 34152419  T
Q  288 tataatcttttgataacatcaaaatttagcgttaatgactgttataatcatgttttgtgccttaagcaaattccacttaaggtcaatatttttatttgac 387  Q
    |||||| ||||||  |  ||| |  |     || |||||||||  ||||||||||| || |||||| ||||||| |||||||||||||||||||||||      
T  34152418 tataatattttgactagctcagatgtggaaattgatgactgttgcaatcatgttttatggcttaagaaaattccgcttaaggtcaatatttttatttg-- 34152321  T
Q  388 attatttgttcctgaatag--tagcaacaaaaatgaatccgtttagcagaaacattttggattataatgatacttt 461  Q
      | |||||||||||||||  |||||||||| ||||||| |||||| ||||| || ||||||||||||||| ||||    
T  34152320 -gtgtttgttcctgaatagattagcaacaaagatgaatctgtttaggagaaatatcttggattataatgattcttt 34152246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 202 - 295
Target Start/End: Original strand, 15567372 - 15567465
Alignment:
Q  202 tgtcacttgttgctttgcaggttcgtgtgactgacatgtggatttagaagcttcattcttcccatcgatacataattaaaaatgcttataatct 295  Q
    |||||||||||| |||||||||| ||| |||| |||||||||||| |||| |||| ||||||||| |||||| ||| |||||||||||||||||    
T  15567372 tgtcacttgttgttttgcaggttggtgcgactaacatgtggatttggaagtttcaatcttcccattgatacacaataaaaaatgcttataatct 15567465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 34152719 - 34152621
Alignment:
Q  12 ggatgaggcttctactttgttttggaaggactca-ggttagatggtgtaccttttgatgttagatatgctaggttgtttgatcttgttgtcaataaatt 109  Q
    |||| |||||||| | ||||||||||||||  |  ||||||||| |||| ||||  |||||| |||||||||||||||||| | || ||| ||||||||    
T  34152719 ggataaggcttcttcgttgttttggaaggatccttggttagatgatgtatctttaaatgttatatatgctaggttgtttgaccctgctgttaataaatt 34152621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 407 - 443
Target Start/End: Original strand, 41695756 - 41695792
Alignment:
Q  407 tagcaacaaaaatgaatccgtttagcagaaacatttt 443  Q
    |||||||||||||||||| |||||| |||||||||||    
T  41695756 tagcaacaaaaatgaatctgtttaggagaaacatttt 41695792  T

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Target: chr7 (Bit Score: 81; Significance: 6e-38; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 194 - 461
Target Start/End: Complemental strand, 6651300 - 6651034
Alignment:
Q  194 ggagcaactgtcacttgttgctttgcaggttcgtgtgactgacatgtggatttagaagcttcattcttcccatcgatacataattaaaaatgcttataat 293  Q
    |||||||||||||||||||| |||| || || ||||||||||||  |||||||| |||||||||||||||||||| || | | | |||| ||||||||||    
T  6651300 ggagcaactgtcacttgttgttttgtagattggtgtgactgacagatggatttaaaagcttcattcttcccatcggtatacagtcaaaagtgcttataat 6651201  T
Q  294 cttttgataacatcaaaatttagcgttaatgactgttataatcatgttttgtgccttaagcaaattccacttaaggtcaatatttttatttgacattatt 393  Q
    | ||||| ||  ||  || || | ||| |||||  || |||||||||||||||||||||||||||||| |||||||| |||||||||||||| |    ||    
T  6651200 catttgacaaattctgaagtttgagttgatgaccattttaatcatgttttgtgccttaagcaaattcctcttaaggtgaatatttttatttggc---ttt 6651104  T
Q  394 tgttcctgaat--agtagcaacaaaaatgaatccgtttagcagaaacattttggattataatgatacttt 461  Q
    |||| ||||||  | ||| ||| |||||||||  |||||| ||| || |||||||||| |||||| ||||    
T  6651103 tgtttctgaataaattagtaactaaaatgaatttgtttaggagatactttttggattacaatgattcttt 6651034  T

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Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 201 - 473
Target Start/End: Complemental strand, 36714303 - 36714031
Alignment:
Q  201 ctgtcacttgttgctttgcaggttcgtgtgactgacatgtggatttagaagcttcattcttcccat--cgatacataattaaaaatgcttataatctttt 298  Q
    ||||||||||||| |||| ||||| ||||| |||| |  || |||| |||| ||||||||||||||  ||||| | | | |||||||||| |||||||||    
T  36714303 ctgtcacttgttgttttgtaggttggtgtggctgatagatgaatttggaagtttcattcttcccatatcgataaacagtcaaaaatgcttgtaatctttt 36714204  T
Q  299 gataacatcaaaatttagcgttaatgactgttataatcatgttttgtgccttaagcaaattccacttaaggtcaatatttttatttgacattatttgttc 398  Q
    || ||| |  ||| || | ||| ||||| ||| ||||||||||||||| ||||||||||||| |||||| |||||||||||||| ||||    |||||||    
T  36714203 gacaacttttaaaattggtgttgatgaccgttttaatcatgttttgtggcttaagcaaattcgacttaatgtcaatatttttatctgac---gtttgttc 36714107  T
Q  399 ctgaatag--tagcaacaaaaatgaatccgtttagcagaaacattttggattataatgatactttgttcacggctac 473  Q
    || |||||  ||||||| |||||||||  |||||| ||||| ||||||||||| |||||| |||||| |||| ||||    
T  36714106 ctaaatagattagcaac-aaaatgaataagtttaggagaaatattttggattacaatgattctttgtgcacgactac 36714031  T

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Target: chr7; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 7 - 127
Target Start/End: Complemental strand, 36714477 - 36714356
Alignment:
Q  7 gtgggggatgaggcttctactttgttttggaaggactcaggtt-agatggtgtaccttttgatgttagatatgctaggttgtttgatcttgttgtcaata 105  Q
    |||| ||||| |||||||||||| |||||||| ||| |  ||| || ||||||| | ||||||||||||||||||||||||||| |||||||||| ||||    
T  36714477 gtggaggatggggcttctactttattttggaaagacccgtgtttagttggtgtaacatttgatgttagatatgctaggttgttttatcttgttgttaata 36714378  T
Q  106 aattatccacaattgcggagat 127  Q
    |||||| |||| |||| |||||    
T  36714377 aattattcacagttgcagagat 36714356  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 48 - 120
Target Start/End: Complemental strand, 6651470 - 6651398
Alignment:
Q  48 ttagatggtgtaccttttgatgttagatatgctaggttgtttgatcttgttgtcaataaattatccacaattg 120  Q
    |||||||||||| |||||||||||||||||| ||||| ||||||||||| ||| ||||||||| | |||||||    
T  6651470 ttagatggtgtatcttttgatgttagatatgttaggtagtttgatcttgctgttaataaattagctacaattg 6651398  T

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Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 239 - 471
Target Start/End: Complemental strand, 33468737 - 33468505
Alignment:
Q  239 gtggatttagaagcttcattcttcccatcgatacataattaaaaatgcttataatcttttgataacatcaaaatttagcgttaatgactgttataatcat 338  Q
    |||||||| |||||||||||||||||||| ||||||| | ||| |||||||| ||||||||| ||| || ||| ||   ||| ||||| ||| |||||||    
T  33468737 gtggatttggaagcttcattcttcccatccatacatagtaaaatatgcttattatcttttgacaacttctaaaattgatgttgatgaccgttttaatcat 33468638  T
Q  339 gttttgtgccttaagcaaattccacttaaggtcaata-tttttatttgacattatttgttcctgaatag--tagcaacaaaaatgaatccgtttagcaga 435  Q
    |||||||| |||||| |||||||||||| |  ||||| |||||||||| |    ||||||| |||||||  ||| |||||||||||||| |||||| |||    
T  33468637 gttttgtggcttaagaaaattccacttacgagcaatattttttatttggc---gtttgttcttgaatagattagtaacaaaaatgaatctgtttaggaga 33468541  T
Q  436 aacattttggattataatgatactttgttcacggct 471  Q
    |||| ||||||||| |||||| |||||| |||||||    
T  33468540 aacaatttggattacaatgattctttgtgcacggct 33468505  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 206 - 263
Target Start/End: Original strand, 23772237 - 23772294
Alignment:
Q  206 acttgttgctttgcaggttcgtgtgactgacatgtggatttagaagcttcattcttcc 263  Q
    |||||||| |||||||||| |||||||||||  ||||||||| |||||||||||||||    
T  23772237 acttgttgttttgcaggttggtgtgactgacgggtggatttataagcttcattcttcc 23772294  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 266
Target Start/End: Complemental strand, 4780956 - 4780886
Alignment:
Q  196 agcaactgtcacttgttgctttgcaggttcgtgtgactgacatgtggatttagaagcttcattcttcccat 266  Q
    ||||||| |||||||| | |||| |||||  |||| |||||| |||||||| |||||||||||||||||||    
T  4780956 agcaactttcacttgtggttttgtaggttgatgtgtctgacaggtggatttggaagcttcattcttcccat 4780886  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 109
Target Start/End: Original strand, 23772053 - 23772116
Alignment:
Q  46 ggttagatggtgtaccttttgatgttagatatgctaggttgtttgatcttgttgtcaataaatt 109  Q
    |||| ||| ||||| |||| |||||||||||| ||||||||||||||||||  || ||||||||    
T  23772053 ggttggattgtgtatctttagatgttagatatactaggttgtttgatcttgcggttaataaatt 23772116  T

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Target: scaffold0001 (Bit Score: 74; Significance: 9e-34; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 253 - 473
Target Start/End: Complemental strand, 68122 - 67903
Alignment:
Q  253 ttcattcttcccatcgatacataattaaaaatgcttataatcttttgataacatcaaaatttagcgttaatgactgttataatcatgttttgtgccttaa 352  Q
    ||||||||||||||||||||| | | |||| ||||||||||||||| ||||  ||  || |||   || ||||| ||| ||||||||||||||  |||||    
T  68122 ttcattcttcccatcgatacacagtcaaaagtgcttataatcttttaataatttctgaagttaatattgatgaccgttttaatcatgttttgtagcttaa 68023  T
Q  353 gcaaattccacttaaggtcaatatttttatttgacattatttgttcctgaatag--tagcaacaaaaatgaatccgtttagcagaaacattttggattat 450  Q
    | |||||||||||||| |||||| ||||| ||| | ||   ||||| ||| |||  ||||||||||||||||||  ||||| ||||||||||||||||||    
T  68022 gaaaattccacttaagatcaataattttacttggcgtt---tgttcttgagtagattagcaacaaaaatgaatctatttaggagaaacattttggattat 67926  T
Q  451 aatgatactttgttcacggctac 473  Q
    |||||| |||||| |||||||||    
T  67925 aatgattctttgtgcacggctac 67903  T

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Target: scaffold0001; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 126
Target Start/End: Complemental strand, 68335 - 68220
Alignment:
Q  7 gtgggggatgaggcttctactttgttttggaaggactcag-gttagatggtgtaccttttgatgttagatatgctaggttgtttgatcttgttgtcaata 105  Q
    ||||||||||||||||| ||| || ||||||||| | |   ||||||||||||| ||||| |||||||| ||     ||||| ||| |||||||| ||||    
T  68335 gtgggggatgaggcttccactatggtttggaagggcccgttgttagatggtgtatctttttatgttagacat-----gttgtctgaccttgttgttaata 68241  T
Q  106 aattatccacaattgcggaga 126  Q
    ||||||||||| |||||||||    
T  68240 aattatccacagttgcggaga 68220  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 332 - 461
Target Start/End: Original strand, 18285503 - 18285631
Alignment:
Q  332 taatcatgttttgtgccttaagcaaattccacttaaggtcaatatttttatttgacattatttgttcctgaatag--tagcaacaaaaatgaatccgttt 429  Q
    |||||||||||| || |||||||||||||| |||||||| |||| |||||||||   |  |||||| ||||||||  |||||||||| ||||||  ||||    
T  18285503 taatcatgttttatggcttaagcaaattccgcttaaggttaataattttatttg---tcgtttgtttctgaatagattagcaacaaagatgaatatgttt 18285599  T
Q  430 agcagaaacattttggattataatgatacttt 461  Q
    || ||||| || ||||||||||||||| ||||    
T  18285600 aggagaaatatattggattataatgattcttt 18285631  T

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Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 55 - 128
Target Start/End: Complemental strand, 29541364 - 29541291
Alignment:
Q  55 gtgtaccttttgatgttagatatgctaggttgtttgatcttgttgtcaataaattatccacaattgcggagatg 128  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||| |||  ||| |||||||    
T  29541364 gtgtatcttttgatgttagatatgctaggttgtttgatcttgctgttaataaattattcactgttgtggagatg 29541291  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 279 - 380
Target Start/End: Complemental strand, 27856896 - 27856795
Alignment:
Q  279 aaaaatgcttataatcttttgataacatcaaaatttagcgttaatgactgttataatcatgttttgtgccttaagcaaattccacttaaggtcaatattt 378  Q
    ||||||| |||||||||||||| ||| |  ||| || | ||| |||||  || ||||||||||||||  ||||||||||||||||||||||| |||||||    
T  27856896 aaaaatgtttataatcttttgacaacttttaaagttggagttgatgaccattttaatcatgttttgtagcttaagcaaattccacttaaggttaatattt 27856797  T
Q  379 tt 380  Q
    ||    
T  27856796 tt 27856795  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 352 - 461
Target Start/End: Complemental strand, 8966988 - 8966886
Alignment:
Q  352 agcaaattccacttaaggtcaatatttttatttgacattatttgttcctgaatagtagcaacaaaaatgaatccgtttagcagaaacattttggattata 451  Q
    ||||||||||  |||||||||||||||||||||| | ||   |||||||||||    | |||||| ||||||  |||||| |||||||||||| ||||||    
T  8966988 agcaaattccgtttaaggtcaatatttttatttggcgtt---tgttcctgaat----gaaacaaagatgaatttgtttaggagaaacattttgaattata 8966896  T
Q  452 atgatacttt 461  Q
    ||||||||||    
T  8966895 atgatacttt 8966886  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 333 - 453
Target Start/End: Original strand, 35544389 - 35544507
Alignment:
Q  333 aatcatgttttgtgccttaagcaaattccacttaaggtcaatatttttatttgacattatttgttcctgaatag--tagcaacaaaaatgaatccgttta 430  Q
    ||||||||||| || |||||||||||||| |||||||| ||||||||| ||||||    |||||||||||||||  ||||||| | || | ||| |||||    
T  35544389 aatcatgttttatggcttaagcaaattccgcttaaggtaaatatttttttttgac---gtttgttcctgaatagattagcaactacaaag-atcggttta 35544484  T
Q  431 gcagaaacattttggattataat 453  Q
    | ||||| || ||||||||||||    
T  35544485 ggagaaatatcttggattataat 35544507  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 267
Target Start/End: Complemental strand, 29541213 - 29541131
Alignment:
Q  182 gagggggtgtgtggagcaactgtcacttgttgctttgcaggttcgtgtgactgacatgtggatttagaagcttcattcttcccatc 267  Q
    ||||| |||||||||||| || |||||||||   |||||||||  |||||| | |||||| |||| |||| |||||||||||||||    
T  29541213 gagggagtgtgtggagcagctatcacttgtt---ttgcaggttgttgtgaccggcatgtgtatttggaagattcattcttcccatc 29541131  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 182 - 262
Target Start/End: Original strand, 28727869 - 28727949
Alignment:
Q  182 gagggggtgtgtggagcaactgtcacttgttgctttgcaggttcgtgtgactgacatgtggatttagaagcttcattcttc 262  Q
    ||||| |||||  ||||| || |||||||| | |||||||||| | ||| |||||  |||||||| |||||||||||||||    
T  28727869 gagggagtgtgcagagcagctctcacttgtggttttgcaggttggcgtgtctgactggtggatttggaagcttcattcttc 28727949  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 333 - 385
Target Start/End: Original strand, 28728020 - 28728072
Alignment:
Q  333 aatcatgttttgtgccttaagcaaattccacttaaggtcaatatttttatttg 385  Q
    |||||| |||| || |||||| ||||||  |||||||||||||||||||||||    
T  28728020 aatcatattttatggcttaagtaaattctgcttaaggtcaatatttttatttg 28728072  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 390
Target Start/End: Complemental strand, 18506669 - 18506611
Alignment:
Q  332 taatcatgttttgtgccttaagcaaattccacttaaggtcaatatttttatttgacatt 390  Q
    ||||||| |||| || |||||||||||| | |||||||| |||||||||||||| ||||    
T  18506669 taatcatattttatggcttaagcaaatttcgcttaaggttaatatttttatttggcatt 18506611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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