View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20382_high_14 (Length: 448)
Name: NF20382_high_14
Description: NF20382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20382_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 351
Target Start/End: Complemental strand, 31691988 - 31691672
Alignment:
| Q |
17 |
atgaactccatgaatattgaattgattcaatgatcctctatccannnnnnnaatcgattcaagcattcaattatgacttttgaatcgattcaaacacata |
116 |
Q |
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| T |
31691988 |
atgaactctatgaatattgaattgattcgattgtcctctatccatttttttaatcgattcaagcattcaattatgacttttgaatcgatttaaacacata |
31691889 |
T |
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| Q |
117 |
caaattgttttgaaatagttgaaaaaacatataacaccaaagactaacccaaaaatgatttacaacaaaggagatttgaaaaatcaaaggttttatgcat |
216 |
Q |
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| T |
31691888 |
caaattgttttgaaatagttgaaaaaacagataacaccaaagactaacccaaaaatgatttacaacaaaggagatttgaaaaatcaaaggtttta----- |
31691794 |
T |
|
| Q |
217 |
gcaaaatgttttatgcaaggcgagaacaagtcctggacttagagaaacaaagcacaatctaaaactatgttgagaatataagacatcactcaaaacttaa |
316 |
Q |
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| T |
31691793 |
-------------tgcaaggcgagaacaagtcctggacttagagaaacaaaacacaatctaaaactatgttgggaatataagacatcactcaaaacttaa |
31691707 |
T |
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| Q |
317 |
gataaagttttaggggaatgctagcaacactcact |
351 |
Q |
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| T |
31691706 |
gataaaattttaggggaatgctagcaacactcact |
31691672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 342 - 423
Target Start/End: Complemental strand, 31691655 - 31691574
Alignment:
| Q |
342 |
aacactcactcttttattgaacgaaatcaatacatagtggagtatgatgttgaagatgtgaggatacctttatctttagtga |
423 |
Q |
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| T |
31691655 |
aacactcactcttttattgaacgaaatcaatacatagtggagtatgatgttgaagatgtgaggatacctttatctttagtga |
31691574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 360
Target Start/End: Original strand, 44742293 - 44742322
Alignment:
| Q |
331 |
ggaatgctagcaacactcactcttttattg |
360 |
Q |
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| T |
44742293 |
ggaatgctagcaacactcactcttttattg |
44742322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 322
Target Start/End: Original strand, 19272892 - 19273009
Alignment:
| Q |
206 |
gttttatgcatgcaaaatgt-tttatgcaaggcgagaacaagtcctggacttagagaaacaaagcacaatctaaaactatgttgagaatataagacatca |
304 |
Q |
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||||||||||||| |||| ||||||||||| ||||| ||||||| |||||||| || || |||||||||||||| || |||||| |||||||| |
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| T |
19272892 |
gttttatgcatgcgaaataagtttatgcaaggtgagaataagtcctaaacttagagggacgaaatgcaatctaaaactatcttaggaatatgagacatca |
19272991 |
T |
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| Q |
305 |
ctcaaaacttaagataaa |
322 |
Q |
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|| |||| ||||||||| |
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| T |
19272992 |
ctaaaaatctaagataaa |
19273009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 360
Target Start/End: Original strand, 15660918 - 15660947
Alignment:
| Q |
331 |
ggaatgctagcaacactcactcttttattg |
360 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
15660918 |
ggaatgctagcaacactcactcttttattg |
15660947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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