View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20382_high_18 (Length: 393)

Name: NF20382_high_18
Description: NF20382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20382_high_18
NF20382_high_18
[»] chr4 (5 HSPs)
chr4 (1-377)||(43108157-43108533)
chr4 (190-331)||(3342933-3343073)
chr4 (301-377)||(3343737-3343814)
chr4 (205-242)||(1607955-1607992)
chr4 (190-246)||(10982557-10982613)
[»] chr7 (4 HSPs)
chr7 (122-377)||(31861012-31861267)
chr7 (188-372)||(28950442-28950625)
chr7 (300-383)||(35153726-35153810)
chr7 (302-377)||(35153615-35153691)
[»] chr8 (1 HSPs)
chr8 (140-354)||(9321376-9321590)
[»] chr2 (5 HSPs)
chr2 (172-377)||(35711688-35711893)
chr2 (162-332)||(38179739-38179908)
chr2 (255-329)||(18483809-18483883)
chr2 (188-242)||(29939597-29939651)
chr2 (320-368)||(11879960-11880009)
[»] chr5 (3 HSPs)
chr5 (172-377)||(10927767-10927971)
chr5 (278-357)||(30840222-30840302)
chr5 (312-377)||(12513125-12513191)
[»] chr1 (1 HSPs)
chr1 (140-361)||(9846252-9846473)
[»] chr6 (2 HSPs)
chr6 (172-226)||(11007941-11007995)
chr6 (267-360)||(8037658-8037751)
[»] chr3 (1 HSPs)
chr3 (207-347)||(25203670-25203811)


Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 43108533 - 43108157
Alignment:
Q  1 tctttgtttgatctacacatattaggtcaaaaggggagggcaaagaggatccataagaaaaagatagaaggttgtgattgaagaggtaagaagatagaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  43108533 tctttgtttgatctacacatattaggtcaaaaggggagggcaaagaggatccataagaaaaagatagaaggttgtaattgaagaggtaagaagatagaca 43108434  T
Q  101 ccctttttagaagnnnnnnn-gagatgatagagagcgaatgtttaggtgagttcgtgaaaaggagatatggatgagattcatgaggaaagaagaaagaga 199  Q
    ||||||| |||||        ||||| ||||||||||||||||| ||||||||||||||||||| ||| |||||||| |||||||| |||||||||||||    
T  43108433 cccttttcagaagaaaaaaaagagatcatagagagcgaatgttttggtgagttcgtgaaaaggaaatagggatgagaatcatgagggaagaagaaagaga 43108334  T
Q  200 tatgttttattgcatgaataacatttgctttgttgcatgtaatcctcttgatacctggtttactgcgtggataacaattgggttgttgcaggcattcctc 299  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  43108333 tatgttt-attgcatgaataacatttgctttgttgcatgtaatcctcttgatacctggtttactgcgtggataacaattgggttgttgcatgcattcctc 43108235  T
Q  300 gtgacatttgagttattgtatgggtaacacttgattgatgcatgtattattcttgacacttgacttgttgcatatatt 377  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  43108234 gtgacatttgggttattgtatgggtaacacttgattgatgcatgtattattcttgacacttgacttgttgcatgtatt 43108157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 190 - 331
Target Start/End: Original strand, 3342933 - 3343073
Alignment:
Q  190 aagaaagagatatgttttattgcatgaataacatttgctttgttgcatgtaatcctcttgatacctggtttactgcgtggataacaattgggttgttgca 289  Q
    |||||||||||||||||||||||||||||||||| || ||| ||||||||||| |||| || |  ||||||||||| ||||||||||||| | |||||||    
T  3342933 aagaaagagatatgttttattgcatgaataacatgtggttttttgcatgtaattctctagaca-ttggtttactgcatggataacaattgcggtgttgca 3343031  T
Q  290 ggcattcctcgtgacatttgagttattgtatgggtaacactt 331  Q
     | |||  || ||||| |||  || ||| |||||||||||||    
T  3343032 tgtatttttcttgacaattgttttgttgcatgggtaacactt 3343073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 377
Target Start/End: Original strand, 3343737 - 3343814
Alignment:
Q  301 tgacatttgagttattgtatgggtaacacttga-ttgatgcatgtattattcttgacacttgacttgttgcatatatt 377  Q
    |||||||||  |||||| ||||||||||||||| ||| ||||||||||  ||||||||||||  ||||||||| ||||    
T  3343737 tgacatttggtttattgcatgggtaacacttgacttgctgcatgtattcatcttgacacttggtttgttgcatgtatt 3343814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 242
Target Start/End: Original strand, 1607955 - 1607992
Alignment:
Q  205 tttattgcatgaataacatttgctttgttgcatgtaat 242  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  1607955 tttattgcataaataacatttgatttgttgcatgtaat 1607992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 246
Target Start/End: Complemental strand, 10982613 - 10982557
Alignment:
Q  190 aagaaagagatatgttttattgcatgaataacatttgctttgttgcatgtaatcctc 246  Q
    |||||||| |||| |||||  |||||||||| |||||  ||||||||||||||||||    
T  10982613 aagaaagaaatatattttaaagcatgaataatatttggcttgttgcatgtaatcctc 10982557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 122 - 377
Target Start/End: Complemental strand, 31861267 - 31861012
Alignment:
Q  122 agatgatagagagcgaatgtttaggtgagttcgtgaaaaggagatatggatgagattcatgaggaaagaagaaagagatatgttttattgcatgaataac 221  Q
    ||||||||||||| |   |||| ||||||||| ||| || ||||   || ||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  31861267 agatgatagagagtgggggttttggtgagttcatgagaaagagagggggttgagatttatgagggaagaagaaagagatatgttttattgcatgaataac 31861168  T
Q  222 atttgctttgttgcatgtaatcctcttgatacctggtttactgcgtggataacaattgggttgttgcaggcattcctcgtgacatttgagttattgtatg 321  Q
    ||||| ||||||||||||||||||||||| || || |||||| | || ||||||||| ||||||||||  |||||||| ||| ||||| |||||||||||    
T  31861167 atttggtttgttgcatgtaatcctcttgacacttgatttactacatgaataacaattaggttgttgcatacattcctcatgatatttgggttattgtatg 31861068  T
Q  322 ggtaacacttgattgatgcatgtattattcttgacacttgacttgttgcatatatt 377  Q
    | ||||||||| ||  |||| ||||| |||| |||||||| |||||||||| ||||    
T  31861067 gataacacttggtttctgcacgtattcttctcgacacttggcttgttgcatgtatt 31861012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 188 - 372
Target Start/End: Original strand, 28950442 - 28950625
Alignment:
Q  188 agaagaaagagatatgttttattgcatgaataacatttgctttgttgcatgtaatcctcttgatacctggtttactgcgtggataacaattgggttgttg 287  Q
    |||||||||||||||||||||||| |||||||||| |||  || |||||||||||| |  ||| || |  |||||||| |||||||||||||  ||||||    
T  28950442 agaagaaagagatatgttttattgtatgaataacacttgacttcttgcatgtaatcttaatgacacttt-tttactgcatggataacaattgaattgttg 28950540  T
Q  288 caggcattcctcgtgacatttgagttattgtatgggtaacacttgattgatgcatgtattattcttgacacttgacttgttgcat 372  Q
    || |||||| || ||||||||||||||||| ||| |||||||||| ||| |||||||| |  ||||||||||||| |||||||||    
T  28950541 catgcattcgtcatgacatttgagttattgcatgagtaacacttggttgttgcatgtactcctcttgacacttgatttgttgcat 28950625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 300 - 383
Target Start/End: Complemental strand, 35153810 - 35153726
Alignment:
Q  300 gtgacatttgagttattgtatgggtaacacttg-attgatgcatgtattattcttgacacttgacttgttgcatatattattctt 383  Q
    |||||| |||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||  ||||||||||    
T  35153810 gtgacagttgatttattgtatgggtaacacttggatcgatgcatgtattattcttgacacttgacttgttacacgtattattctt 35153726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 377
Target Start/End: Complemental strand, 35153691 - 35153615
Alignment:
Q  302 gacatttgagttattgtatgggtaacacttga-ttgatgcatgtattattcttgacacttgacttgttgcatatatt 377  Q
    |||| |||| |||||| | ||||||||||||| ||| ||||| ||||  ||||||||||||||| ||||||| ||||    
T  35153691 gacacttgatttattgcacgggtaacacttgacttgctgcatatatttctcttgacacttgactggttgcatgtatt 35153615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 140 - 354
Target Start/End: Original strand, 9321376 - 9321590
Alignment:
Q  140 gtttaggtgagttcgtgaaaaggagatatggatgagattcatgaggaaagaagaaagagatatgttttattgcatgaataacatttgctttgttgcatgt 239  Q
    |||| ||||||||||||| || |||||  || || ||||||||| | | ||||||||||||||||||||||||||||||||||||||| |||||| || |    
T  9321376 gttttggtgagttcgtgagaaagagatgaggttgggattcatgaaggaggaagaaagagatatgttttattgcatgaataacatttgccttgttgaatat 9321475  T
Q  240 aatcctcttgatacctggtttactgcgtggataacaattgggttgttgcaggcattcctcgtgacatttgagttattgtatgggtaacacttgattgatg 339  Q
    ||||||||||| |  | ||||  ||| |||||||||||| |||||||||| |||||||| | |||||||||||||||| |||||||||||||| ||| ||    
T  9321476 aatcctcttgacatttagtttgttgcatggataacaattaggttgttgcaagcattccttgagacatttgagttattgcatgggtaacacttggttgttg 9321575  T
Q  340 catgtattattcttg 354  Q
    |||||||| ||||||    
T  9321576 catgtattcttcttg 9321590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 1e-50; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 172 - 377
Target Start/End: Complemental strand, 35711893 - 35711688
Alignment:
Q  172 tgagattcatgaggaaagaagaaagagatatgttttattgcatgaataacatttgctttgttgcatgtaatcctcttgatacctggtttactgcgtggat 271  Q
    |||||||||||||| ||||||||| | ||||||||||||||||||||||||||||  |||||| ||||| ||||||||| |  ||||| ||||  |||||    
T  35711893 tgagattcatgagggaagaagaaaaatatatgttttattgcatgaataacatttggcttgttgtatgtattcctcttgacatttggttaactggatggat 35711794  T
Q  272 aacaattgggttgttgcaggcattcctcgtgacatttgagttattgtatgggtaacacttgattgatgcatgtattattcttgacacttgacttgttgca 371  Q
    ||||||||| |||||||| ||||||||||||||||||| ||||||| |||||||||||| | ||| |||| |||||  ||||||||||||  ||||||||    
T  35711793 aacaattggcttgttgcatgcattcctcgtgacatttgggttattgcatgggtaacactaggttgttgcaagtattgatcttgacacttggtttgttgca 35711694  T
Q  372 tatatt 377  Q
    | ||||    
T  35711693 tgtatt 35711688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 162 - 332
Target Start/End: Complemental strand, 38179908 - 38179739
Alignment:
Q  162 gagatatggatgagattcatgaggaaagaagaaagagatatgttttattgcatgaataacatttgctttgttgcatgtaatcctcttgatacctggttta 261  Q
    |||| |||| || ||||||||||  || ||||||||||||||||||||||||||  |||||||||  ||||||||||||||| ||| ||||| ||||||     
T  38179908 gagagatggttgggattcatgagtgaaaaagaaagagatatgttttattgcatgtgtaacatttgacttgttgcatgtaatcttctcgatacttggttt- 38179810  T
Q  262 ctgcgtggataacaattgggttgttgcaggcattcctcgtgacatttgagttattgtatgggtaacacttg 332  Q
    |||| ||||||| ||||||||||||||| ||||||||| |||| |||||||||||| ||| ||||||||||    
T  38179809 ctgcatggataaaaattgggttgttgcatgcattcctcatgacgtttgagttattgaatgagtaacacttg 38179739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 329
Target Start/End: Original strand, 18483809 - 18483883
Alignment:
Q  255 tggtttactgcgtggataacaattgggttgttgcaggcattcctcgtgacatttgagttattgtatgggtaacac 329  Q
    ||||||||||| ||||| | |||||||||| |||| |||||| |  ||||||||| ||||||| |||||||||||    
T  18483809 tggtttactgcatggatgataattgggttgctgcatgcattctttatgacatttgggttattgaatgggtaacac 18483883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 242
Target Start/End: Original strand, 29939597 - 29939651
Alignment:
Q  188 agaagaaagagatatgttttattgcatgaataacatttgctttgttgcatgtaat 242  Q
    |||||||||||||||  ||||||| ||||||||||||||| || |||||||||||    
T  29939597 agaagaaagagatatagtttattgaatgaataacatttgccttattgcatgtaat 29939651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 368
Target Start/End: Original strand, 11879960 - 11880009
Alignment:
Q  320 tgggtaacacttga-ttgatgcatgtattattcttgacacttgacttgtt 368  Q
    |||||||||||||  ||||||||||||||  |||||||||||||||||||    
T  11879960 tgggtaacacttggcttgatgcatgtattcctcttgacacttgacttgtt 11880009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 5e-41; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 172 - 377
Target Start/End: Original strand, 10927767 - 10927971
Alignment:
Q  172 tgagattcatgaggaaagaagaaagagatatgttttattgcatgaataacatttgctttgttgcatgtaatcctcttgatacctggtttactgcgtggat 271  Q
    |||||||||| | | || |||||||||| |||||||| || |||||||| |||||  ||||||  ||||||||| |||| || |  |||| ||| |||||    
T  10927767 tgagattcatcaaggaaaaagaaagagacatgttttactgtatgaataatatttggcttgttgtctgtaatcctattgacactta-tttaatgcatggat 10927865  T
Q  272 aacaattgggttgttgcaggcattcctcgtgacatttgagttattgtatgggtaacacttgattgatgcatgtattattcttgacacttgacttgttgca 371  Q
    |||||||| ||||||||| ||||| ||| | ||||||||||||||| |||||||||||||| | |||||||||||| |||||||||||||| ||||||||    
T  10927866 aacaattgagttgttgcatgcatttctcataacatttgagttattgcatgggtaacacttggtcgatgcatgtattcttcttgacacttgatttgttgca 10927965  T
Q  372 tatatt 377  Q
    ||||||    
T  10927966 tatatt 10927971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 278 - 357
Target Start/End: Original strand, 30840222 - 30840302
Alignment:
Q  278 tgggttgttgcaggcatt-cctcgtgacatttgagttattgtatgggtaacacttgattgatgcatgtattattcttgaca 357  Q
    |||||||||||| ||||| |||||||||||||| ||||| | |||||||||||||| ||| |||||||||| |||||||||    
T  30840222 tgggttgttgcatgcatttcctcgtgacatttgggttatggcatgggtaacacttggttgttgcatgtatttttcttgaca 30840302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 377
Target Start/End: Original strand, 12513125 - 12513191
Alignment:
Q  312 ttattgtatgggtaacacttga-ttgatgcatgtattattcttgacacttgacttgttgcatatatt 377  Q
    |||||| |||||||||||| || ||| ||||||||||  ||||||||||||| ||||||||| ||||    
T  12513125 ttattgcatgggtaacactcgacttgttgcatgtattcctcttgacacttgaattgttgcatgtatt 12513191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 140 - 361
Target Start/End: Complemental strand, 9846473 - 9846252
Alignment:
Q  140 gtttaggtgagttcgtgaaaaggagatatggatgagattcatgaggaaagaagaaagagatatgttttattgcatgaataacatttgctttgttgcatgt 239  Q
    |||| ||||||||| |||||| || | | || || |||| ||||||   |||||||||||||||||||| |||||| |||| |||||  |||||||| ||    
T  9846473 gttttggtgagttcatgaaaaagaaagagggttgggattaatgagggctgaagaaagagatatgttttagtgcatgtataatatttggcttgttgcacgt 9846374  T
Q  240 aatcctcttgatacctggtttactgcgtggataacaattgggttgttgcaggcattcctcgtgacatttgagttattgtatgggtaacacttgattgatg 339  Q
    | |||||| || || |||||||||| |||||||||||||||||||||| | | |||||||  |||||||| |||||||  ||| ||||| ||| ||| ||    
T  9846373 agtcctctcgacacttggtttactgtgtggataacaattgggttgttgtatgtattcctcacgacatttgggttattgcgtggataacaattggttgttg 9846274  T
Q  340 catgtattattcttgacacttg 361  Q
    |||||||| ||||| |||||||    
T  9846273 catgtatttttcttaacacttg 9846252  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 11007995 - 11007941
Alignment:
Q  172 tgagattcatgaggaaagaagaaagagatatgttttattgcatgaataacatttg 226  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||    
T  11007995 tgagattcatgagaaaagaagaaagagatatattttattgcatgaataaaatttg 11007941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 267 - 360
Target Start/End: Complemental strand, 8037751 - 8037658
Alignment:
Q  267 tggataacaattgggttgttgcaggcattcctcgtgacatttgagttattgtatgggtaacacttgattgatgcatgtattattcttgacactt 360  Q
    ||||||||| ||||||||||||| ||||||||| ||| |||||  |||||  ||| |||||| ||| | | |||||||||| ||||||||||||    
T  8037751 tggataacagttgggttgttgcatgcattcctcatgagatttggtttatttcatgagtaacatttggtcgttgcatgtatttttcttgacactt 8037658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 207 - 347
Target Start/End: Original strand, 25203670 - 25203811
Alignment:
Q  207 tattgcatgaataacatttgctttgttgcatgtaatcctcttgatacctggtttactgcgtggataacaattgggttgttgcaggcattcctcgtgacat 306  Q
    |||||||||||||||| ||| |||| |||||||| || |||||| || | ||||  ||| || ||||||||||| |||||||| || |||||| |||||     
T  25203670 tattgcatgaataacaattggtttgatgcatgtattcatcttgacacttagtttgttgcatgaataacaattggtttgttgcatgctttcctcttgacac 25203769  T
Q  307 ttgagttattgtatgggtaacacttga-ttgatgcatgtatt 347  Q
    |||  |||||| |||  |||||||||| ||||| ||||||||    
T  25203770 ttggtttattgcatgaataacacttgacttgattcatgtatt 25203811  T

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