View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20382_high_22 (Length: 310)

Name: NF20382_high_22
Description: NF20382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20382_high_22
NF20382_high_22
[»] chr2 (1 HSPs)
chr2 (1-297)||(38187251-38187540)


Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 38187540 - 38187251
Alignment:
Q  1 agactgagactgagactgagactggagtgataacatgtggaaagtggaaagtggcacttgcaaattcaaatgtctcctattatggttgtatacacaccat 100  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||       ||||| ||||||||||||||||||||||||||||||||||||||||    
T  38187540 agactaagactgagactgagactggagtgataacatgtggaaagtgg-------cacttacaaattcaaatgtctcctattatggttgtatacacaccat 38187448  T
Q  101 atatttttaactcagttaccagttccttgcaccttttgcgttggatgtttattccctaggattttttggcctaggatttgaatcaaactggaagattatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38187447 atatttttaactcagttaccagttccttgcaccttttgcgttggatgtttattccctaggattttttggcctaggatttgaatcaaactggaagattatg 38187348  T
Q  201 atagaaattgtaggtgttcataaatagacataacttgtttcatagaatattgtttgtatttaataatattgacaattatggttctgatcttaaatgt 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38187347 atagaaattgtaggtgttcataaatagacataacttgtttcatagaatattgtttgtatttaataatattgacaattatggttctgatcttaaatgt 38187251  T

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