View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20382_high_25 (Length: 286)
Name: NF20382_high_25
Description: NF20382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20382_high_25 |
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| [»] scaffold0095 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 38816303 - 38816582
Alignment:
| Q |
1 |
ccagtgtcagtgcactttacaaccctatcctatgggttaatgtaggaacatgagcatcaaatgatattgaaacatggatatccccatttgaagcagaggt |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38816303 |
ccagtgtcggtgcactttacaaccctatcctatgggttaatgtaggaacatgagcatcaaatgatattgaaacatggatatccccatttgaagcagaggt |
38816402 |
T |
|
| Q |
101 |
tgacctgtctttacatcccctatcttttgggagtgggttctcctctgcaatactgttttatatttaccgcttcatggacaaatactaagtcaaacattta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38816403 |
tgacctgtctttacatcccctatcttttgggagtgggttctcctctgcaatactgttttatatttaccgcttcatggacaaatactaagtcaaacattta |
38816502 |
T |
|
| Q |
201 |
ctctaaagaggtagtggatttgtattcggaaaaaccaaagtctcacattggccagaaataaggcctaagtagagccttag |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38816503 |
ctctaaagaggtagtggatttgtattcggaaaaaccaaagtctcacattggccagaaataaggcctaagtagagccttag |
38816582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 183
Target Start/End: Original strand, 39464157 - 39464324
Alignment:
| Q |
15 |
ctttacaaccctatcctatgggttaatgtaggaacatgagcatcaaatgatattgaaacatggatatccccatttgaagcagaggttgacctgtctttac |
114 |
Q |
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||||||||||||| ||| |||||||||||||||||||||| || ||||| ||| |||||||||| | || ||||| || |||||||||||||||| ||| |
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| T |
39464157 |
ctttacaaccctagcctgtgggttaatgtaggaacatgagtattgaatgagattaaaacatggattttcc-atttgtaggagaggttgacctgtctgtac |
39464255 |
T |
|
| Q |
115 |
atcccctatcttttgggagtgggttctcctctgcaatactgttttatatttaccgcttcatggacaaat |
183 |
Q |
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| T |
39464256 |
atcccctatcttttaggagtgggttcttctctacagtattgttttatgtttgctgtttcatgggcaaat |
39464324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 114 - 275
Target Start/End: Original strand, 39456969 - 39457127
Alignment:
| Q |
114 |
catcccctatcttttgggagtgggttctcctctgcaatactgttttatatttaccgcttcatggacaaatactaagtcaaacatttactctaaagaggta |
213 |
Q |
| |
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|||||||||||||||||||||| |||||||||| || |||| |||||| ||| | |||||||| ||||| || || | ||||||||| |||| ||| |
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| T |
39456969 |
catcccctatcttttgggagtgagttctcctctacagtactattttatgtttcctaattcatggaagaatacaaaatctatcatttactc-caagacgta |
39457067 |
T |
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| Q |
214 |
gtggatttgtattcggaaaaaccaaagtctcacattggccagaaataaggcctaagtagagc |
275 |
Q |
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||||||| |||| ||||||| |||||||| |||||| |||||||||||||||| ||||| |
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| T |
39457068 |
gtggattagtatcaggaaaaatcaaagtct--cattggatagaaataaggcctaagaagagc |
39457127 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 25 - 275
Target Start/End: Complemental strand, 39406804 - 39406568
Alignment:
| Q |
25 |
ctatcctatgggttaatgtaggaacatgagcatcaaatgatattgaaacatggatatccccatttgaagcagaggttgacctgtctttacatcccctatc |
124 |
Q |
| |
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|||||||||||||||||||||||| | | || ||||| |||||||||||||||||| |||| || ||||||| |||| | |||||||||| |||| |
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| T |
39406804 |
ctatcctatgggttaatgtaggaaaacaaatattcaatgagattgaaacatggatatcct-atttatagtagaggtttacctatttttacatcccatatc |
39406706 |
T |
|
| Q |
125 |
ttttgggagtgggttctcctctgcaatactgttttatatttaccgcttcatggacaaatactaagtcaaacatttactctaaagaggtagtggatttgta |
224 |
Q |
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|||||||||||||||||||||| |||||||||||| ||| |||||||| | || ||||||||||||||||| || |||||| ||| ||| |
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| T |
39406705 |
ttttgggagtgggttctcctctacaatactgttttttat------------ggacaaatgcaaaatcaaacatttactctaa-gatgtagtgaattagta |
39406619 |
T |
|
| Q |
225 |
ttcggaaaaaccaaagtctcacattggccagaaataaggcctaagtagagc |
275 |
Q |
| |
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|| ||||||| |||||||| |||||||| |||||||||||||||||||||| |
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| T |
39406618 |
ttgggaaaaatcaaagtcttacattggctagaaataaggcctaagtagagc |
39406568 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0095 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0095
Description:
Target: scaffold0095; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 183
Target Start/End: Complemental strand, 24344 - 24177
Alignment:
| Q |
15 |
ctttacaaccctatcctatgggttaatgtaggaacatgagcatcaaatgatattgaaacatggatatccccatttgaagcagaggttgacctgtctttac |
114 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||||| || ||||| ||| |||||||||| | || ||||| || |||||||||||||||| ||| |
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| T |
24344 |
ctttacaaccctagcctgtgggttaatgtaggaacatgagtattgaatgagattaaaacatggattttcc-atttgtaggagaggttgacctgtctgtac |
24246 |
T |
|
| Q |
115 |
atcccctatcttttgggagtgggttctcctctgcaatactgttttatatttaccgcttcatggacaaat |
183 |
Q |
| |
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|||||||||||||| |||||||||||| |||| || || |||||||| ||| | | ||||||| ||||| |
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|
| T |
24245 |
atcccctatcttttaggagtgggttcttctctacagtattgttttatgtttgctgtttcatgggcaaat |
24177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 20148583 - 20148645
Alignment:
| Q |
10 |
gtgcactttacaaccctatcctatgggttaatgtaggaacatgagcatcaaatgatattgaaa |
72 |
Q |
| |
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|||||||||||||||||||||||| |||||||||| ||||||||| || ||||| ||||||| |
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|
| T |
20148583 |
gtgcactttacaaccctatcctatcggttaatgtaagaacatgagtatttaatgagattgaaa |
20148645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 182
Target Start/End: Original strand, 12097334 - 12097494
Alignment:
| Q |
20 |
caaccctatcctatgggttaatgtaggaacatgagcatcaaatgatattgaaacatggatatccccatttgaagcagaggttgacctgtctttacatccc |
119 |
Q |
| |
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|||||||| |||||| |||||| ||| |||||||| || |||||| ||||||||||| |||| || |||| | | ||||||| ||||||||||| || |
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| T |
12097334 |
caaccctaccctatgtgttaatatagaaacatgagtattaaatgaaattgaaacatgaatat-cctatttcttgtattggttgacttgtctttacat-cc |
12097431 |
T |
|
| Q |
120 |
ctatcttttgggagtgggttctcctctgcaatactgttttatatttaccgcttcatggacaaa |
182 |
Q |
| |
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||||||||||| ||||| |||| ||| | ||||||||||||||| | |||||||||||| |
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|
| T |
12097432 |
ctatcttttggaagtggattcttttctaccgtactgttttatattttttgtttcatggacaaa |
12097494 |
T |
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