View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20382_high_26 (Length: 286)
Name: NF20382_high_26
Description: NF20382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20382_high_26 |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 17 - 282
Target Start/End: Complemental strand, 39162881 - 39162616
Alignment:
| Q |
17 |
actagatgttgaatgttggtgctgagtgttacagataatctagggaaagtcatggaacaagctctgaagttggatgccggtcgttgataaacaagctctt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39162881 |
actagatgttgaatgttggtgctgagtgttacagataatctagggaaagtcatggaacaagctctgaagttggatgccggtcgttgataaacaagctctt |
39162782 |
T |
|
| Q |
117 |
catcagaaaatattatatgaccaatctgccatgttatacaaaactagatagcattttctctaaaatcctttttcactgcaatctaggctttatatcatcc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39162781 |
catcagaaaatattatatgaccaatctgccatgttatacaaaactagatagcattttctctaaaatcctttttcactgcaatctaggctttatatcatcc |
39162682 |
T |
|
| Q |
217 |
acttgtaaaacaatgacaattttttcacacccttttatgtgtttgtgcaatataagtactgcttat |
282 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39162681 |
acttgtaaaacaatgacaaatttttcacacccttttatgtgtttgtgcaatataagtactgcttat |
39162616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 17 - 282
Target Start/End: Original strand, 39206313 - 39206578
Alignment:
| Q |
17 |
actagatgttgaatgttggtgctgagtgttacagataatctagggaaagtcatggaacaagctctgaagttggatgccggtcgttgataaacaagctctt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39206313 |
actagatgttgaatgttggtgctgagtgttacagataatctagggaaagtcatggaacaagctctgaagttggatgccggtcgttgataaacaagctctt |
39206412 |
T |
|
| Q |
117 |
catcagaaaatattatatgaccaatctgccatgttatacaaaactagatagcattttctctaaaatcctttttcactgcaatctaggctttatatcatcc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39206413 |
catcagaaaatattatatgaccaatctgccatgttatacaaaactagatagcattttctctaaaatcctttttcactgcaatctaggctttatatcatcc |
39206512 |
T |
|
| Q |
217 |
acttgtaaaacaatgacaattttttcacacccttttatgtgtttgtgcaatataagtactgcttat |
282 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39206513 |
acttgtaaaacaatgacaaatttttcacacccttttatgtgtttgtgcaatataagtactgcttat |
39206578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 93 - 282
Target Start/End: Original strand, 39197217 - 39197406
Alignment:
| Q |
93 |
ccggtcgttgataaacaagctcttcatcagaaaatattatatgaccaatctgccatgttatacaaaactagatagcattttctctaaaatcctttttcac |
192 |
Q |
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||||| |||| |||||||||||||||| || || || |||||||||||| |||||||||||||||||| |||||||||| ||||||||| | |||||| |
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| T |
39197217 |
ccggttgttgctaaacaagctcttcattggaccattttctatgaccaatcttccatgttatacaaaactatatagcattttatctaaaatcttgtttcac |
39197316 |
T |
|
| Q |
193 |
tgcaatctaggctttatatcatccacttgtaaaacaatgacaattttttcacacccttttatg-tgtttgtgcaatataagtactgcttat |
282 |
Q |
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||||||||||||||||||| |||||||||||||||| | ||||||||| ||||| ||| ||| | |||||||| |||||||||||||||| |
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| T |
39197317 |
tgcaatctaggctttatattttccacttgtaaaacaacgtcaatttttt-acaccgtttaatgttttttgtgcattataagtactgcttat |
39197406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 104 - 223
Target Start/End: Original strand, 39388233 - 39388356
Alignment:
| Q |
104 |
taaacaagctcttcatcagaaaatattatatgaccaatctgccatgttatacaaaactagatagcattttctctaaaatcctttttcactgcaa----tc |
199 |
Q |
| |
|
|||||||||||||||| || ||| |||||||||||||||||||||||||||||||||| || |||||||||||||||| | ||||| ||||| || |
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| T |
39388233 |
taaacaagctcttcattggacaattttatatgaccaatctgccatgttatacaaaactacgtaacattttctctaaaatcttctttcattgcaatcattc |
39388332 |
T |
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| Q |
200 |
taggctttatatcatccacttgta |
223 |
Q |
| |
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|||||||||| || |||||||||| |
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| T |
39388333 |
taggctttatttcttccacttgta |
39388356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 165; Significance: 3e-88; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 20 - 256
Target Start/End: Complemental strand, 33561884 - 33561648
Alignment:
| Q |
20 |
agatgttgaatgttggtgctgagtgttacagataatctagggaaagtcatggaacaagctctgaagttggatgccggtcgttgataaacaagctcttcat |
119 |
Q |
| |
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|||||||| ||| ||||| ||||| ||||||||||||||||||||||||||||||||||||| | | ||||||| |||||||| |||||||||||||||| |
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| T |
33561884 |
agatgttggatgctggtgttgagttttacagataatctagggaaagtcatggaacaagctctaatgctggatgctggtcgttgctaaacaagctcttcat |
33561785 |
T |
|
| Q |
120 |
cagaaaatattatatgaccaatctgccatgttatacaaaactagatagcattttctctaaaatcctttttcactgcaatctaggctttatatcatccact |
219 |
Q |
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|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33561784 |
gggacaattttatatgaccaatctgccatgttatacaaaactagatagcattttctctaaaatcctttttcactgcaatctaggctttatatcttccact |
33561685 |
T |
|
| Q |
220 |
tgtaaaacaatgacaattttttcacacccttttatgt |
256 |
Q |
| |
|
|||||||||||| | | |||| ||||||||||||||| |
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| T |
33561684 |
tgtaaaacaatggcgaattttacacacccttttatgt |
33561648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 186 - 267
Target Start/End: Complemental strand, 33561648 - 33561567
Alignment:
| Q |
186 |
ttttcactgcaatctaggctttatatcatccacttgtaaaacaatgacaattttttcacacccttttatgtgtttgtgcaat |
267 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||| | | |||| ||||||||||||||| |||||||||| |
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| T |
33561648 |
ttttcactgcaatctaggctttatatcttccacttgtaaaacaatggcgaattttacacacccttttatgtttttgtgcaat |
33561567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 193 - 282
Target Start/End: Complemental strand, 33561572 - 33561480
Alignment:
| Q |
193 |
tgcaatctaggctttatatcatccacttgtaaaacaatgacaattttttcacacccttttatgtgt---ttgtgcaatataagtactgcttat |
282 |
Q |
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|||||||||||||||||||| ||||||||| |||||||| ||| |||| ||||||||| ||||| | |||||||||||||||||||||||| |
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| T |
33561572 |
tgcaatctaggctttatatcttccacttgttaaacaatggcaaattttacacacccttctatgtttttgttgtgcaatataagtactgcttat |
33561480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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