View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20382_high_30 (Length: 237)

Name: NF20382_high_30
Description: NF20382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20382_high_30
NF20382_high_30
[»] chr2 (22 HSPs)
chr2 (1-237)||(40948777-40949014)
chr2 (5-146)||(20140822-20140963)
chr2 (163-233)||(40945945-40946015)
chr2 (7-144)||(1943885-1944022)
chr2 (31-146)||(28191707-28191821)
chr2 (81-146)||(24895756-24895821)
chr2 (94-145)||(17642434-17642485)
chr2 (36-143)||(28191442-28191549)
chr2 (96-146)||(35652126-35652176)
chr2 (31-146)||(578206-578325)
chr2 (94-146)||(10439836-10439888)
chr2 (31-146)||(12926506-12926622)
chr2 (96-143)||(12496892-12496939)
chr2 (94-145)||(27987365-27987416)
chr2 (94-145)||(28073897-28073948)
chr2 (40-146)||(35665326-35665432)
chr2 (96-146)||(43281892-43281941)
chr2 (94-143)||(8095019-8095068)
chr2 (80-145)||(17642622-17642687)
chr2 (81-146)||(27002997-27003062)
chr2 (85-146)||(41245622-41245683)
chr2 (86-134)||(38825334-38825382)
[»] chr3 (17 HSPs)
chr3 (5-146)||(25693296-25693437)
chr3 (5-146)||(28259708-28259847)
chr3 (5-143)||(52275090-52275225)
chr3 (16-146)||(16024763-16024893)
chr3 (5-124)||(51107915-51108033)
chr3 (78-146)||(17321894-17321963)
chr3 (31-146)||(54141605-54141719)
chr3 (5-147)||(49278588-49278729)
chr3 (60-143)||(1741971-1742054)
chr3 (94-145)||(44664531-44664582)
chr3 (95-145)||(28260028-28260078)
chr3 (60-146)||(33309948-33310034)
chr3 (81-147)||(40374639-40374705)
chr3 (85-146)||(31989803-31989864)
chr3 (95-144)||(51107679-51107728)
chr3 (95-144)||(53804596-53804645)
chr3 (86-134)||(38507168-38507216)
[»] chr4 (13 HSPs)
chr4 (60-146)||(17947289-17947375)
chr4 (46-146)||(41823538-41823638)
chr4 (81-144)||(5521527-5521590)
chr4 (95-143)||(11692153-11692201)
chr4 (81-145)||(38851974-38852038)
chr4 (81-145)||(51203221-51203285)
chr4 (94-144)||(11692574-11692623)
chr4 (96-146)||(31792623-31792673)
chr4 (85-146)||(5497092-5497153)
chr4 (85-146)||(52131907-52131968)
chr4 (81-145)||(2478935-2478999)
chr4 (94-142)||(36955682-36955730)
chr4 (95-143)||(40154675-40154723)
[»] chr5 (18 HSPs)
chr5 (81-146)||(40972143-40972208)
chr5 (5-123)||(42267586-42267707)
chr5 (81-143)||(7630641-7630703)
chr5 (80-148)||(38445989-38446057)
chr5 (40-143)||(38445670-38445773)
chr5 (96-146)||(9125377-9125427)
chr5 (31-109)||(15304601-15304679)
chr5 (81-146)||(21034622-21034687)
chr5 (85-142)||(32892124-32892181)
chr5 (84-144)||(12542110-12542170)
chr5 (36-144)||(26032249-26032357)
chr5 (81-137)||(40971848-40971904)
chr5 (60-146)||(41863733-41863819)
chr5 (81-146)||(3850207-3850272)
chr5 (81-146)||(32892446-32892511)
chr5 (36-112)||(756898-756974)
chr5 (106-146)||(37782325-37782365)
chr5 (80-120)||(38142397-38142437)
[»] chr1 (15 HSPs)
chr1 (71-144)||(9117485-9117558)
chr1 (80-146)||(27086271-27086337)
chr1 (94-146)||(91742-91794)
chr1 (96-146)||(14397989-14398039)
chr1 (16-146)||(27085953-27086085)
chr1 (94-146)||(30567957-30568009)
chr1 (70-144)||(14520840-14520913)
chr1 (85-146)||(538921-538981)
chr1 (96-144)||(3910180-3910229)
chr1 (79-120)||(10840505-10840545)
chr1 (85-146)||(19238170-19238231)
chr1 (81-146)||(33261690-33261754)
chr1 (81-146)||(33281849-33281913)
chr1 (114-146)||(35766595-35766627)
chr1 (94-146)||(46947421-46947473)
[»] scaffold0939 (1 HSPs)
scaffold0939 (36-146)||(685-795)
[»] chr6 (5 HSPs)
chr6 (36-110)||(1427282-1427355)
chr6 (39-143)||(4096749-4096853)
chr6 (31-144)||(3014516-3014630)
chr6 (96-145)||(4096483-4096532)
chr6 (86-146)||(20510280-20510340)
[»] chr8 (8 HSPs)
chr8 (36-145)||(15249561-15249670)
chr8 (95-146)||(33757872-33757923)
chr8 (81-145)||(22210257-22210321)
chr8 (95-146)||(33758154-33758205)
chr8 (98-139)||(194621-194661)
chr8 (98-139)||(309458-309498)
chr8 (94-143)||(12871117-12871165)
chr8 (85-146)||(36102133-36102194)
[»] chr7 (13 HSPs)
chr7 (94-145)||(1619673-1619724)
chr7 (79-144)||(14584929-14584994)
chr7 (31-146)||(33005106-33005222)
chr7 (39-123)||(33998831-33998915)
chr7 (86-144)||(45318526-45318584)
chr7 (85-146)||(2962985-2963046)
chr7 (79-144)||(15998799-15998864)
chr7 (60-145)||(25245012-25245097)
chr7 (80-145)||(30218749-30218814)
chr7 (102-143)||(37389815-37389856)
chr7 (86-134)||(7475804-7475852)
chr7 (84-144)||(13009035-13009095)
chr7 (94-146)||(30219063-30219115)


Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 40949014 - 40948777
Alignment:
Q  1 aatatcaagaacacatcaaacttattttcgttagtgaccaaaaacaaaacaaaagaatctgtgaagataaaaacacatcgttttattttatatggactaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  40949014 aatatcaagaacacatcaaacttattttcgttagtgaccaaaaacaaaacaaaaatatctgtgaagataaaaacacatcgttttattttatatggactaa 40948915  T
Q  101 aatcaaaatttgttatatttatagcgataaaaaacttatttaaccccagttaaaatattaaaacaaaatagtgtaatg-caacaattaatctaaaatcaa 199  Q
    ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  40948914 aataaaaatttgttatatttatagggataaaaaacttatttaaccccagttaaaatattaaaacaaaatagtgtaatgccaacaattaatctaaaatcaa 40948815  T
Q  200 atttgaagaccataaccaaaataaacaaatgcaccatc 237  Q
    ||||||||||||||||||||||||||||||||||||||    
T  40948814 atttgaagaccataaccaaaataaacaaatgcaccatc 40948777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 5 - 146
Target Start/End: Complemental strand, 20140963 - 20140822
Alignment:
Q  5 tcaagaacacatcaaacttattttcgttagtgaccaaaaacaaaacaaaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatc 104  Q
    |||||||||||||||| ||||||||||||| |||| |||||||||||||| ||| ||||| ||| |||| || ||||||||||||||| ||||||||||     
T  20140963 tcaagaacacatcaaaattattttcgttagggacctaaaacaaaacaaaaaaatttgtgaggatgaaaatacctcgttttattttataaggactaaaatt 20140864  T
Q  105 aaaatttgttatatttatagcgataaaaaacttatttaaccc 146  Q
    |||||||||||||||||||| || ||||| ||||||||||||    
T  20140863 aaaatttgttatatttatagagacaaaaatcttatttaaccc 20140822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 163 - 233
Target Start/End: Complemental strand, 40946015 - 40945945
Alignment:
Q  163 acaaaatagtgtaatgcaacaattaatctaaaatcaaatttgaagaccataaccaaaataaacaaatgcac 233  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  40946015 acaaaatagtgtaatgcaacaattaatctaaaatcaaatttaaagaccataaccaaaataaacaaatgcac 40945945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 144
Target Start/End: Complemental strand, 1944022 - 1943885
Alignment:
Q  7 aagaacacatcaaacttattttcgttagtgaccaaaaacaaaacaaaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatcaa 106  Q
    |||||||| ||||  ||||||||||||  ||||||||||||||||||| ||| ||||| ||  ||||||| ||||| ||||||||| |||||||||| ||    
T  1944022 aagaacacgtcaacattattttcgttaaagaccaaaaacaaaacaaaaaaatttgtgaggaagaaaacacctcgttctattttataaggactaaaattaa 1943923  T
Q  107 aatttgttatatttatagcgataaaaaacttatttaac 144  Q
    ||| | |||||||||||  ||  |||||||||||||||    
T  1943922 aatctattatatttataaggacgaaaaacttatttaac 1943885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 31 - 146
Target Start/End: Original strand, 28191707 - 28191821
Alignment:
Q  31 ttagtgaccaaaaacaaaacaaaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttgttatatttatagcgataa 130  Q
    |||| ||||||||||||||||||| | | ||||| ||| ||||||  || ||||||||| ||  || ||||||||||||||| |||||||||||  | ||    
T  28191707 ttagagaccaaaaacaaaacaaaaaattttgtgaggatgaaaacatctcattttattttgtaaagattaaaatcaaaatttgatatatttatag-aaaaa 28191805  T
Q  131 aaaacttatttaaccc 146  Q
    |||| |||||||||||    
T  28191806 aaaaattatttaaccc 28191821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 146
Target Start/End: Original strand, 24895756 - 24895821
Alignment:
Q  81 ttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 146  Q
    ||||||||| || ||||||||||||||||||||||||||| ||  ||  |||||||||||||||||    
T  24895756 ttttattttgtagggactaaaatcaaaatttgttatatttgtaaggacgaaaaacttatttaaccc 24895821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 145
Target Start/End: Complemental strand, 17642485 - 17642434
Alignment:
Q  94 ggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaacc 145  Q
    |||||||||||||||| | |||||||||||| ||| ||||||||||||||||    
T  17642485 ggactaaaatcaaaatctattatatttatagggatgaaaaacttatttaacc 17642434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 143
Target Start/End: Complemental strand, 28191549 - 28191442
Alignment:
Q  36 gaccaaaaacaaaacaaaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaac 135  Q
    ||||||||| |||| |||| ||| ||||| ||| ||||||    |||| ||||| || ||||||||||||||||| | ||||||||||| || |||||||    
T  28191549 gaccaaaaataaaataaaaaaatttgtgaggatgaaaacattcagtttaattttgtacggactaaaatcaaaattcgctatatttatagggacaaaaaac 28191450  T
Q  136 ttatttaa 143  Q
    ||| ||||    
T  28191449 ttaattaa 28191442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 96 - 146
Target Start/End: Original strand, 35652126 - 35652176
Alignment:
Q  96 actaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 146  Q
    |||||||| |||||||| ||||||||||| ||| |||||||||||||||||    
T  35652126 actaaaattaaaatttgatatatttatagggatgaaaaacttatttaaccc 35652176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 146
Target Start/End: Complemental strand, 578325 - 578206
Alignment:
Q  31 ttagtgaccaaaaacaaaacaaaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttgtta---tatttatagcga 127  Q
    |||| ||||||||  ||||||||| ||| |||   ||| ||||||  || ||||||||| || ||||||||||||||||||| ||   ||||||||| ||    
T  578325 ttagggaccaaaactaaaacaaaaaaatttgtcgggatgaaaacatctcattttattttttagggactaaaatcaaaatttgctatattatttataggga 578226  T
Q  128 t-aaaaaacttatttaaccc 146  Q
    | ||||||||||||||||||    
T  578225 taaaaaaacttatttaaccc 578206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 10439836 - 10439888
Alignment:
Q  94 ggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 146  Q
    ||||||||||||||||||| ||||||| || | | ||||||||||||||||||    
T  10439836 ggactaaaatcaaaatttgatatatttttaacaacaaaaaacttatttaaccc 10439888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 146
Target Start/End: Complemental strand, 12926622 - 12926506
Alignment:
Q  31 ttagtgaccaaaaacaaaacaaa-agaatctgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttgttatatttatagcgata 129  Q
    |||| ||||||||| |||||||| | ||  ||||| ||| ||||||  || |||||||||  | |||| ||||||||||||   ||||||||||| |||     
T  12926622 ttagggaccaaaaataaaacaaacaaaaattgtgaggatgaaaacaactcattttatttttcagggacgaaaatcaaaattcaatatatttatagtgatg 12926523  T
Q  130 aaaaacttatttaaccc 146  Q
    |||||||||||||||||    
T  12926522 aaaaacttatttaaccc 12926506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 143
Target Start/End: Original strand, 12496892 - 12496939
Alignment:
Q  96 actaaaatcaaaatttgttatatttatagcgataaaaaacttatttaa 143  Q
    ||||||||||||||| ||||||||||||| ||| ||||| ||||||||    
T  12496892 actaaaatcaaaattcgttatatttatagggatgaaaaatttatttaa 12496939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 145
Target Start/End: Original strand, 27987365 - 27987416
Alignment:
Q  94 ggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaacc 145  Q
    ||||||||| |||||||||  |||||||||| || |||||||||||||||||    
T  27987365 ggactaaaaacaaaatttgagatatttatagagagaaaaaacttatttaacc 27987416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 145
Target Start/End: Original strand, 28073897 - 28073948
Alignment:
Q  94 ggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaacc 145  Q
    ||||||||| |||||||||  |||||||||| || |||||||||||||||||    
T  28073897 ggactaaaaacaaaatttgagatatttatagagagaaaaaacttatttaacc 28073948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 146
Target Start/End: Complemental strand, 35665432 - 35665326
Alignment:
Q  40 aaaaacaaaacaaaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttat 139  Q
    |||||||||| |||| ||| ||||| ||| ||||||     ||| ||||| || ||||||||||||||||| | ||||||||||  ||  ||||||||||    
T  35665432 aaaaacaaaataaaaaaatttgtgaggatgaaaacattcactttaattttttagggactaaaatcaaaattcgctatatttataaggacgaaaaacttat 35665333  T
Q  140 ttaaccc 146  Q
    |||||||    
T  35665332 ttaaccc 35665326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 146
Target Start/End: Original strand, 43281892 - 43281941
Alignment:
Q  96 actaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 146  Q
    ||||||||||||||||||||||||  ||| ||| |||||||||||||||||    
T  43281892 actaaaatcaaaatttgttatattattag-gatgaaaaacttatttaaccc 43281941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 8095019 - 8095068
Alignment:
Q  94 ggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaa 143  Q
    ||||||||| ||||||||||||||||||||| ||  |||||| |||||||    
T  8095019 ggactaaaaacaaaatttgttatatttatagggactaaaaacatatttaa 8095068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 145
Target Start/End: Original strand, 17642622 - 17642687
Alignment:
Q  80 gttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaacc 145  Q
    |||| ||||| || ||||||||||||||||| | ||||||| ||| ||  ||||||||||||||||    
T  17642622 gtttaattttttaaggactaaaatcaaaattcgctatatttttagggacgaaaaacttatttaacc 17642687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 146
Target Start/End: Original strand, 27002997 - 27003062
Alignment:
Q  81 ttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 146  Q
    ||||||||| || ||||||||||| |||||||  |||||||||| ||  ||| |||||||||||||    
T  27002997 ttttattttttagggactaaaatccaaatttgacatatttatagggacgaaacacttatttaaccc 27003062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 146
Target Start/End: Complemental strand, 41245683 - 41245622
Alignment:
Q  85 attttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 146  Q
    |||||| | |||||||||| |||| ||| ||||||||||| || ||||||| ||||||||||    
T  41245683 attttaaagggactaaaatgaaaagttggtatatttatagggacaaaaaacatatttaaccc 41245622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 134
Target Start/End: Original strand, 38825334 - 38825382
Alignment:
Q  86 ttttatatggactaaaatcaaaatttgttatatttatagcgataaaaaa 134  Q
    ||||||| | ||||||| ||||||||||||||||||||| || ||||||    
T  38825334 ttttataagaactaaaaacaaaatttgttatatttatagggacaaaaaa 38825382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 5 - 146
Target Start/End: Complemental strand, 25693437 - 25693296
Alignment:
Q  5 tcaagaacacatcaaacttattttcgttagtgaccaaaaacaaaacaaaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatc 104  Q
    |||||||||| ||||| ||||||||||||| ||||||||||||||||| | ||| ||||| ||| ||||||| ||||||||||||||| |||| ||||||    
T  25693437 tcaagaacacgtcaaaattattttcgttagggaccaaaaacaaaacaacaaaatttgtgaggatgaaaacacctcgttttattttataaggaccaaaatc 25693338  T
Q  105 aaaatttgttatatttatagcgataaaaaacttatttaaccc 146  Q
    ||||| ||||||| |||||| ||  |||||||||||||||||    
T  25693337 aaaatatgttataattatagggacgaaaaacttatttaaccc 25693296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 146
Target Start/End: Complemental strand, 28259847 - 28259708
Alignment:
Q  5 tcaagaacacatcaaacttattttcgttagtgaccaaaaacaaaacaaaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatc 104  Q
    |||||||||| ||||| ||||||||||||| ||||||||||||||||||| | | |||| |||  ||||||| | | |||||||||||||||||||||||    
T  28259847 tcaagaacacgtcaaaattattttcgttagggaccaaaaacaaaacaaaaaattttgtg-agaataaaacaccttgctttattttatatggactaaaatc 28259749  T
Q  105 aaaatttgttatatttatagcgataaaaaacttatttaaccc 146  Q
    | ||| |||||| ||||||| ||   ||||||||||||||||    
T  28259748 ataatatgttatttttataggga-cgaaaacttatttaaccc 28259708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 5 - 143
Target Start/End: Original strand, 52275090 - 52275225
Alignment:
Q  5 tcaagaacacatcaaacttattttcgttagtgaccaaaaacaaaacaaaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatc 104  Q
    |||||||||  ||||| ||||||||||||| |||||||||||||| ||||  || ||  | ||| ||||||| ||||||||||||||| |||||||| ||    
T  52275090 tcaagaacatgtcaaaattattttcgttagggaccaaaaacaaaataaaa--atttgcaaggatgaaaacacctcgttttattttataaggactaaactc 52275187  T
Q  105 aaaatttgttatatttatagcgataaaaaacttatttaa 143  Q
    ||||| |||||||||||||| ||  ||||||||||||||    
T  52275188 aaaatctgttatatttatag-gacgaaaaacttatttaa 52275225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 16024763 - 16024893
Alignment:
Q  16 tcaaacttattttcgttagtgaccaaaaacaaaacaaaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttgtta 115  Q
    ||||| |||| ||| |||| ||||||||| |||| |||| ||| ||||| ||| ||||||  || ||||||||| || ||||||||||||||||||| ||    
T  16024763 tcaaagttatattcattagagaccaaaaataaaataaaaaaatatgtgaggatgaaaacatctcattttattttttagggactaaaatcaaaatttgata 16024862  T
Q  116 tatttatagcgataaaaaacttatttaaccc 146  Q
    ||||||||| ||  || ||||||||||||||    
T  16024863 tatttatagggacgaataacttatttaaccc 16024893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 124
Target Start/End: Original strand, 51107915 - 51108033
Alignment:
Q  5 tcaagaacacatcaaacttattttcgttagtgaccaaaaacaaaacaaaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatc 104  Q
    |||||||| | ||||| |||| || ||||| || ||||||||||| |||| ||| ||||| ||| ||||||| | |||||||||| || |||||||||||    
T  51107915 tcaagaactcgtcaaaattatatttgttagggatcaaaaacaaaataaaaaaat-tgtgatgatgaaaacaccttgttttattttttaaggactaaaatc 51108013  T
Q  105 aaaatttgttatatttatag 124  Q
    ||||| ||||||||||||||    
T  51108014 aaaatctgttatatttatag 51108033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 17321894 - 17321963
Alignment:
Q  78 tcgttttattttatatggactaaaatcaaaatttgttatatttatagcga-taaaaaacttatttaaccc 146  Q
    ||||||||||||||| ||||| |||||||||| |||||||||||||| ||  ||||||||||||||||||    
T  17321894 tcgttttattttataaggactgaaatcaaaatctgttatatttatagggacgaaaaaacttatttaaccc 17321963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 31 - 146
Target Start/End: Original strand, 54141605 - 54141719
Alignment:
Q  31 ttagtgaccaaaaacaaaacaaaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttgttatatttatagcgataa 130  Q
    |||| ||||||||||||||||||| | | ||||| ||| ||||||  || ||||||||| ||  ||||||||| ||||||||||||||| || | || ||    
T  54141605 ttagggaccaaaaacaaaacaaaaaattttgtgaggatgaaaacatctcattttatttt-taaagactaaaatgaaaatttgttatattcatggggacaa 54141703  T
Q  131 aaaacttatttaaccc 146  Q
    ||||||| ||||||||    
T  54141704 aaaacttttttaaccc 54141719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 147
Target Start/End: Original strand, 49278588 - 49278729
Alignment:
Q  5 tcaagaacacatcaaacttattttcgttagtgaccaaaaacaaaacaaaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatc 104  Q
    |||||||||||||||| ||||||| ||||  |||  |||||||||||||| ||| | | | ||| |||| |  |  |||||||||| | |||||||||||    
T  49278588 tcaagaacacatcaaaattatttttgttaaggacggaaaacaaaacaaaaaaat-tataacgatgaaaataacttattttattttacaaggactaaaatc 49278686  T
Q  105 aaaatttgttatatttatagcgataaaaaacttatttaacccc 147  Q
    |||||  ||||||| ||||| ||  ||||||||||||||||||    
T  49278687 aaaatcagttatatatatagggacgaaaaacttatttaacccc 49278729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 143
Target Start/End: Complemental strand, 1742054 - 1741971
Alignment:
Q  60 tgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaa 143  Q
    ||||| ||| ||||||  || ||||||||| || ||| ||||||||||||||| ||||||||||| ||| |||| |||||||||    
T  1742054 tgtgaggatgaaaacatctcattttattttttagggattaaaatcaaaatttgatatatttatagggatgaaaatcttatttaa 1741971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 145
Target Start/End: Complemental strand, 44664582 - 44664531
Alignment:
Q  94 ggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaacc 145  Q
    ||||||||| ||||| ||||||||||||||  ||| ||||||||||||||||    
T  44664582 ggactaaaaacaaaaattgttatatttataaggattaaaaacttatttaacc 44664531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 145
Target Start/End: Original strand, 28260028 - 28260078
Alignment:
Q  95 gactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaacc 145  Q
    |||||||||||||||||| ||||||| ||| ||  ||||||||||||||||    
T  28260028 gactaaaatcaaaatttgctatatttttagggacgaaaaacttatttaacc 28260078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 146
Target Start/End: Original strand, 33309948 - 33310034
Alignment:
Q  60 tgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 146  Q
    ||||| ||| |||||||  ||||||||||| || |||||||||| |||||| | ||||| | ||| ||  |||||||||||||||||    
T  33309948 tgtgaggatgaaaacaccccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaaccc 33310034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 147
Target Start/End: Complemental strand, 40374705 - 40374639
Alignment:
Q  81 ttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaacccc 147  Q
    |||| ||||||  ||||||||| | |||||  |||||||||||| || |||||||||||||||||||    
T  40374705 tttttttttatgaggactaaaaacgaaattgattatatttatagggacaaaaaacttatttaacccc 40374639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 146
Target Start/End: Complemental strand, 31989864 - 31989803
Alignment:
Q  85 attttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 146  Q
    ||||| || |||||||||| |||||||| ||||||||||  ||  |||||||||||||||||    
T  31989864 attttttagggactaaaatgaaaatttgatatatttatatggacgaaaaacttatttaaccc 31989803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 144
Target Start/End: Complemental strand, 51107728 - 51107679
Alignment:
Q  95 gactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaac 144  Q
    |||||||||||||||||||||||||| ||  || ||| ||||||||||||    
T  51107728 gactaaaatcaaaatttgttatatttttaaggacaaagaacttatttaac 51107679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 144
Target Start/End: Complemental strand, 53804645 - 53804596
Alignment:
Q  95 gactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaac 144  Q
    |||||||||||||||||| |||||||| || ||  |||||||||||||||    
T  53804645 gactaaaatcaaaatttgatatatttaaagggacgaaaaacttatttaac 53804596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 134
Target Start/End: Original strand, 38507168 - 38507216
Alignment:
Q  86 ttttatatggactaaaatcaaaatttgttatatttatagcgataaaaaa 134  Q
    ||||||| | ||||||| ||||||||||||||||||||| || ||||||    
T  38507168 ttttataagaactaaaaacaaaatttgttatatttatagggacaaaaaa 38507216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 60 - 146
Target Start/End: Original strand, 17947289 - 17947375
Alignment:
Q  60 tgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 146  Q
    ||||| ||| ||||||  || ||||||||| || ||||||||||||||||||| ||||||||||| ||| ||||| |||||||||||    
T  17947289 tgtgaggatgaaaacatctcattttattttttagggactaaaatcaaaatttgatatatttatagggatgaaaaatttatttaaccc 17947375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 146
Target Start/End: Complemental strand, 41823638 - 41823538
Alignment:
Q  46 aaaacaaaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaacc 145  Q
    ||||||||| ||| | ||| ||||||||||  || |||||| || || ||| ||||||||||||||| |||||||||   ||| ||||||||||||||||    
T  41823638 aaaacaaaaaaatttatgaggataaaaacatctcattttatcttttaaggattaaaatcaaaatttgatatatttatgaggatgaaaaacttatttaacc 41823539  T
Q  146 c 146  Q
    |    
T  41823538 c 41823538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 144
Target Start/End: Original strand, 5521527 - 5521590
Alignment:
Q  81 ttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaac 144  Q
    ||||||||| || ||||||||||||||||| | ||||||||||| ||  |||||||||||||||    
T  5521527 ttttattttttaaggactaaaatcaaaattcgctatatttatagggacgaaaaacttatttaac 5521590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 143
Target Start/End: Complemental strand, 11692201 - 11692153
Alignment:
Q  95 gactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaa 143  Q
    |||||||||||||||| | ||||||||||| ||| ||||||||||||||    
T  11692201 gactaaaatcaaaattcgctatatttatagggatgaaaaacttatttaa 11692153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 145
Target Start/End: Complemental strand, 38852038 - 38851974
Alignment:
Q  81 ttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaacc 145  Q
    ||||||||| || ||| |||||||||||||| |||||||| ||| ||  ||||||||||||||||    
T  38852038 ttttattttttaaggattaaaatcaaaatttattatatttttagagacgaaaaacttatttaacc 38851974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 145
Target Start/End: Complemental strand, 51203285 - 51203221
Alignment:
Q  81 ttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaacc 145  Q
    ||||||||| || ||||||||||||||||| |  |||||||||| ||  ||||||||||||||||    
T  51203285 ttttattttttagggactaaaatcaaaattcgcaatatttatagggacgaaaaacttatttaacc 51203221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 11692574 - 11692623
Alignment:
Q  94 ggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaac 144  Q
    ||||||||| |||||||||||||| |||||| ||| |||||||||||||||    
T  11692574 ggactaaaaacaaaatttgttata-ttatagagatcaaaaacttatttaac 11692623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 146
Target Start/End: Complemental strand, 31792673 - 31792623
Alignment:
Q  96 actaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 146  Q
    ||||||||||||||||| ||||||||||| ||  ||||| |||||||||||    
T  31792673 actaaaatcaaaatttgatatatttatagggacgaaaaatttatttaaccc 31792623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 146
Target Start/End: Original strand, 5497092 - 5497153
Alignment:
Q  85 attttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 146  Q
    |||||| | |||||||||| |||| ||| ||||||||||| ||| |||||| ||||||||||    
T  5497092 attttaaagggactaaaatgaaaagttgatatatttatagggatcaaaaacatatttaaccc 5497153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 146
Target Start/End: Complemental strand, 52131968 - 52131907
Alignment:
Q  85 attttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 146  Q
    ||||| |||||||||||||||||||| ||||||||| ||| ||   | ||||||||||||||    
T  52131968 attttttatggactaaaatcaaaattcgttatatttgtagggacggataacttatttaaccc 52131907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 145
Target Start/End: Complemental strand, 2478999 - 2478935
Alignment:
Q  81 ttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaacc 145  Q
    ||||| ||| || |||||||||||||||||   ||||||||||| ||  ||||||||||||||||    
T  2478999 ttttaatttttagggactaaaatcaaaattaaatatatttatagggacgaaaaacttatttaacc 2478935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 142
Target Start/End: Original strand, 36955682 - 36955730
Alignment:
Q  94 ggactaaaatcaaaatttgttatatttatagcgataaaaaacttattta 142  Q
    ||||||||| |||||||  |||||||||||||||  |||||||||||||    
T  36955682 ggactaaaaacaaaattcattatatttatagcgaacaaaaacttattta 36955730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 40154675 - 40154723
Alignment:
Q  95 gactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaa 143  Q
    ||||||||||||| |||| ||||||||||| ||  ||||||||||||||    
T  40154675 gactaaaatcaaattttgatatatttatagggacgaaaaacttatttaa 40154723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 81 - 146
Target Start/End: Original strand, 40972143 - 40972208
Alignment:
Q  81 ttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 146  Q
    ||||||||| || ||||||||||||||||| ||||||||||||| ||| ||||| |||||||||||    
T  40972143 ttttattttttagggactaaaatcaaaattcgttatatttatagggatgaaaaaattatttaaccc 40972208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 123
Target Start/End: Complemental strand, 42267707 - 42267586
Alignment:
Q  5 tcaagaacacatcaaacttattttcgttagtgaccaaaaacaaaacaaaagaatctgtgaagataaaaacacatcgttttatttt---atatggactaaa 101  Q
    |||||||||| ||||| ||||||| ||||| ||| |||||||||||||||  || || || ||| ||||||| |  |||||||||   ||| ||||||||    
T  42267707 tcaagaacacgtcaaaattatttttgttagggacaaaaaacaaaacaaaaatatttgggaggatgaaaacaccttattttattttataataaggactaaa 42267608  T
Q  102 atcaaaatttgttatatttata 123  Q
    |||||||| | |||||||||||    
T  42267607 atcaaaatatattatatttata 42267586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 81 - 143
Target Start/End: Original strand, 7630641 - 7630703
Alignment:
Q  81 ttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaa 143  Q
    ||||||||| || ||||||||||||||||||| ||||||||||| ||  ||||||||||||||    
T  7630641 ttttattttttagggactaaaatcaaaatttgatatatttatagagacgaaaaacttatttaa 7630703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 148
Target Start/End: Original strand, 38445989 - 38446057
Alignment:
Q  80 gttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaacccca 148  Q
    |||| ||||| || ||||||||||||||||| | | ||||||||| ||| |||||||||||||||||||    
T  38445989 gtttaattttttagggactaaaatcaaaattcgctgtatttatagggatgaaaaacttatttaacccca 38446057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 143
Target Start/End: Complemental strand, 38445773 - 38445670
Alignment:
Q  40 aaaaacaaaacaaaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttat 139  Q
    ||||||||||||||| | | ||||| ||| ||||||  || |||||| || ||  |||||||||||||||||| || |||||||| ||  ||||||||||    
T  38445773 aaaaacaaaacaaaaaattttgtgacgatgaaaacagctcattttatattttagagactaaaatcaaaatttgatacatttatagggacgaaaaacttat 38445674  T
Q  140 ttaa 143  Q
    ||||    
T  38445673 ttaa 38445670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 96 - 146
Target Start/End: Complemental strand, 9125427 - 9125377
Alignment:
Q  96 actaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 146  Q
    ||||||| |||||||   |||||||||||||||||||||||||||||||||    
T  9125427 actaaaaacaaaattgactatatttatagcgataaaaaacttatttaaccc 9125377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 31 - 109
Target Start/End: Original strand, 15304601 - 15304679
Alignment:
Q  31 ttagtgaccaaaaacaaaacaaaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaat 109  Q
    |||| ||||||||| ||||||||| | | ||||||||||||||||  || ||||||||| || ||||||||| ||||||    
T  15304601 ttagagaccaaaaagaaaacaaaaaattttgtgaagataaaaacatctcattttattttttaaggactaaaagcaaaat 15304679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 146
Target Start/End: Complemental strand, 21034687 - 21034622
Alignment:
Q  81 ttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 146  Q
    ||||||||| |  |||||| |||||||||||| ||||||||||| ||  |||||||||||||||||    
T  21034687 ttttattttttggggactataatcaaaatttgatatatttatagggaacaaaaacttatttaaccc 21034622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 32892181 - 32892124
Alignment:
Q  85 attttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttattta 142  Q
    ||||| |||||||||||||||||||||   |||||||||| ||| |||||||||||||    
T  32892181 attttttatggactaaaatcaaaatttaccatatttatagggatgaaaaacttattta 32892124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 12542170 - 12542110
Alignment:
Q  84 tattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaac 144  Q
    |||||| || ||| |||||||||||||  |||||||||||| || ||||||||||||||||    
T  12542170 tattttttagggattaaaatcaaaattcattatatttatagagacaaaaaacttatttaac 12542110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 144
Target Start/End: Complemental strand, 26032357 - 26032249
Alignment:
Q  36 gaccaaaaacaaaacaaaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaac 135  Q
    |||||||||||||| |||| | | ||||| ||| ||||||    |||| ||||| || ||| ||||||||||||| | ||||||||||| ||  ||||||    
T  26032357 gaccaaaaacaaaataaaaaattttgtgaggatgaaaacattcagtttaattttttagggattaaaatcaaaattcgctatatttatagggacgaaaaac 26032258  T
Q  136 ttatttaac 144  Q
    |||||||||    
T  26032257 ttatttaac 26032249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 40971904 - 40971848
Alignment:
Q  81 ttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaactt 137  Q
    ||||||||| || |||||||||||||||||| |||||||||||  ||| ||||||||    
T  40971904 ttttattttttagggactaaaatcaaaatttattatatttataaggatgaaaaactt 40971848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 146
Target Start/End: Original strand, 41863733 - 41863819
Alignment:
Q  60 tgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 146  Q
    ||||| ||| ||||||  || ||||||||||||  || |||||| ||| |||| |||||||| || ||| |||||||||||||||||    
T  41863733 tgtgaggatgaaaacatctcattttattttatagagattaaaataaaattttgatatatttacagggatgaaaaacttatttaaccc 41863819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 146
Target Start/End: Original strand, 3850207 - 3850272
Alignment:
Q  81 ttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 146  Q
    |||||||||||| ||||||||| ||||||||   |||||||||| ||  ||||||||| |||||||    
T  3850207 ttttattttatagggactaaaaacaaaattttgaatatttatagggactaaaaacttaattaaccc 3850272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 146
Target Start/End: Original strand, 32892446 - 32892511
Alignment:
Q  81 ttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 146  Q
    ||||||||||||  |||||||||||||||| | ||||| ||||  ||  |||||||||||||||||    
T  32892446 ttttattttatagagactaaaatcaaaattcgctatatctataaagaagaaaaacttatttaaccc 32892511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 112
Target Start/End: Original strand, 756898 - 756974
Alignment:
Q  36 gaccaaaaacaaaacaaaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttg 112  Q
    |||| |||||||||||||| ||| | ||| ||| ||||||   ||||||||||| ||  ||||||||||||||||||    
T  756898 gaccgaaaacaaaacaaaaaaatttatgaggatgaaaacattgcgttttattttttagagactaaaatcaaaatttg 756974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 37782365 - 37782325
Alignment:
Q  106 aaatttgttatatttatagcgataaaaaacttatttaaccc 146  Q
    |||||||||||||||||||  || |||||||||||||||||    
T  37782365 aaatttgttatatttataggaattaaaaacttatttaaccc 37782325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 38142437 - 38142397
Alignment:
Q  80 gttttattttatatggactaaaatcaaaatttgttatattt 120  Q
    |||||||||| || ||||||||||||||||||| |||||||    
T  38142437 gttttattttttaaggactaaaatcaaaatttgctatattt 38142397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 71 - 144
Target Start/End: Original strand, 9117485 - 9117558
Alignment:
Q  71 aaacacatcgttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaac 144  Q
    |||||| || ||| ||||| || | ||||||||||||||||||||||||||||| || ||||||||||||||||    
T  9117485 aaacacctcatttaattttttaagaactaaaatcaaaatttgttatatttatagggacaaaaaacttatttaac 9117558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 80 - 146
Target Start/End: Original strand, 27086271 - 27086337
Alignment:
Q  80 gttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 146  Q
    |||| ||||| || |||||||||||| |||||||||||||||||  ||| |||||||||||||||||    
T  27086271 gtttaattttttaaggactaaaatcagaatttgttatatttataaggatgaaaaacttatttaaccc 27086337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 91742 - 91794
Alignment:
Q  94 ggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 146  Q
    ||||||||||||||||||| ||||||||||| ||| |||||| ||||||||||    
T  91742 ggactaaaatcaaaatttggtatatttatagagatcaaaaacatatttaaccc 91794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 96 - 146
Target Start/End: Complemental strand, 14398039 - 14397989
Alignment:
Q  96 actaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 146  Q
    ||||||||||||||| ||||||||||||  ||| |||||||||||||||||    
T  14398039 actaaaatcaaaattagttatatttatatggatgaaaaacttatttaaccc 14397989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 146
Target Start/End: Complemental strand, 27086085 - 27085953
Alignment:
Q  16 tcaaacttattttcgttagtgaccaaaaacaaaacaaaagaatctgtgaagataaaaacacatcgtttt-attttatatggactaaaatcaaaattt-gt 113  Q
    ||||| |||| ||| |||| ||||||||| ||||||||| ||| ||||| ||| ||||||  || |||| ||||| || |||||||||| ||| ||| |     
T  27086085 tcaaaattatattcattagggaccaaaaataaaacaaaaaaatttgtgaggatgaaaacatctcatttttattttttagggactaaaattaaatttttga 27085986  T
Q  114 tatatttatagcgataaaaaacttatttaaccc 146  Q
    ||||||||||  || ||||| ||||||||||||    
T  27085985 tatatttataaggacaaaaatcttatttaaccc 27085953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 30567957 - 30568009
Alignment:
Q  94 ggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 146  Q
    ||||||||| ||||||| | ||||||| ||||||| |||||||||||||||||    
T  30567957 ggactaaaaacaaaattcgatatatttttagcgatcaaaaacttatttaaccc 30568009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 144
Target Start/End: Original strand, 14520840 - 14520913
Alignment:
Q  70 aaaacacatcgttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaac 144  Q
    |||||| ||||||||||||| |||||||||||||||||||| | |||| || |||  |  |||||||||||||||    
T  14520840 aaaacatatcgttttatttt-tatggactaaaatcaaaattcgctataattttagaaacgaaaaacttatttaac 14520913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 146
Target Start/End: Original strand, 538921 - 538981
Alignment:
Q  85 attttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 146  Q
    ||||||||||||||||||  |||| ||| ||||||||||| ||| |||||| ||||||||||    
T  538921 attttatatggactaaaacgaaaagttggtatatttatag-gatcaaaaacatatttaaccc 538981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 3910229 - 3910180
Alignment:
Q  96 actaaaatcaaaatttgttatatttatagcga-taaaaaacttatttaac 144  Q
    ||||||||||||||||| |||||||| || || |||||||||||||||||    
T  3910229 actaaaatcaaaatttgatatatttacagagactaaaaaacttatttaac 3910180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 120
Target Start/End: Original strand, 10840505 - 10840545
Alignment:
Q  79 cgttttattttatatggactaaaatcaaaatttgttatattt 120  Q
    ||||||||||| || |||||||||||||||||||||||||||    
T  10840505 cgttttatttt-taaggactaaaatcaaaatttgttatattt 10840545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 146
Target Start/End: Original strand, 19238170 - 19238231
Alignment:
Q  85 attttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 146  Q
    |||||| | |||||||||  |||||||||||||||||||| ||  |||||| ||||||||||    
T  19238170 attttagagggactaaaacgaaaatttgttatatttatagggaccaaaaacatatttaaccc 19238231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 146
Target Start/End: Complemental strand, 33261754 - 33261690
Alignment:
Q  81 ttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 146  Q
    ||||||||| || ||||||||||||||||||| ||| ||||||  ||  |||||||||||||||||    
T  33261754 ttttattttttagggactaaaatcaaaatttgatat-tttataaggacgaaaaacttatttaaccc 33261690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 146
Target Start/End: Complemental strand, 33281913 - 33281849
Alignment:
Q  81 ttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 146  Q
    ||||||||| || ||||||||||||||||||| ||| ||||||  ||  |||||||||||||||||    
T  33281913 ttttattttttagggactaaaatcaaaatttgatat-tttataaggacgaaaaacttatttaaccc 33281849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 146
Target Start/End: Original strand, 35766595 - 35766627
Alignment:
Q  114 tatatttatagcgataaaaaacttatttaaccc 146  Q
    ||||||||||| |||||||||||||||||||||    
T  35766595 tatatttatagggataaaaaacttatttaaccc 35766627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 46947421 - 46947473
Alignment:
Q  94 ggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 146  Q
    |||||||||| |||| ||| ||||||||||| ||| |||||| ||||||||||    
T  46947421 ggactaaaatgaaaaattggtatatttatagggatcaaaaacatatttaaccc 46947473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0939 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0939
Description:

Target: scaffold0939; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 146
Target Start/End: Original strand, 685 - 795
Alignment:
Q  36 gaccaaaaacaaaacaaaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaac 135  Q
    ||||||||  ||||||||| ||| ||||| ||| ||||||  || || |||||| || ||| |||||| |||||||||||||||||||| ||  |||||     
T  685 gaccaaaactaaaacaaaaaaatttgtgatgatgaaaacaactcattatattttttagggaataaaattaaaatttgttatatttatagggacgaaaaat 784  T
Q  136 ttatttaaccc 146  Q
    |||||||||||    
T  785 ttatttaaccc 795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 110
Target Start/End: Complemental strand, 1427355 - 1427282
Alignment:
Q  36 gaccaaaaacaaaacaaaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatt 110  Q
    ||||||||||||||||||| ||| ||||| ||| |||| || ||||||||||||| | |||||||||||||||||    
T  1427355 gaccaaaaacaaaacaaaaaaat-tgtgaggatgaaaatacctcgttttattttacaaggactaaaatcaaaatt 1427282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 39 - 143
Target Start/End: Original strand, 4096749 - 4096853
Alignment:
Q  39 caaaaacaaaacaaaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaactta 138  Q
    |||||||||||||||| ||| ||||| ||| ||||||  || ||| ||||| || ||| ||||||||||||||| | ||||||||| ||  ||||| |||    
T  4096749 caaaaacaaaacaaaaaaatttgtgatgatgaaaacatctcatttaattttttagggattaaaatcaaaatttgatttatttatagggacgaaaaattta 4096848  T
Q  139 tttaa 143  Q
    |||||    
T  4096849 tttaa 4096853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 144
Target Start/End: Original strand, 3014516 - 3014630
Alignment:
Q  31 ttagtgaccaaaaacaaaacaaaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttgttatatttatagcgat-a 129  Q
    |||| ||||||||| ||| ||||| ||| ||||| ||||||||||   | ||||||||| || | | |||||| ||||||   ||||||||||| ||| |    
T  3014516 ttagggaccaaaaataaagcaaaaaaatttgtgaggataaaaacatcacattttattttttaggaattaaaataaaaattcactatatttatagggatga 3014615  T
Q  130 aaaaacttatttaac 144  Q
    |||||||||||||||    
T  3014616 aaaaacttatttaac 3014630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 4096532 - 4096483
Alignment:
Q  96 actaaaatcaaaatttgttatatttatagcgataaaaaacttatttaacc 145  Q
    |||||||| |||||| |||||||||||||  | |||||||||||||||||    
T  4096532 actaaaattaaaattcgttatatttataggaacaaaaaacttatttaacc 4096483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 20510280 - 20510340
Alignment:
Q  86 ttttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 146  Q
    ||||||| ||||||||| |||||||  |||||||||||| ||  ||||||||| |||||||    
T  20510280 ttttatacggactaaaaacaaaattcattatatttatagggactaaaaacttaattaaccc 20510340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 145
Target Start/End: Original strand, 15249561 - 15249670
Alignment:
Q  36 gaccaaaaacaaaacaaaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaac 135  Q
    |||||||||||||| |||| | | ||||| ||| ||||||  || ||||||||| ||  ||| |||||||||||||| ||| ||||||| ||| |||| |    
T  15249561 gaccaaaaacaaaataaaaaattttgtgaggatgaaaacatctcattttattttttagtgacgaaaatcaaaatttgatatgtttatagggatgaaaagc 15249660  T
Q  136 ttatttaacc 145  Q
    ||||||||||    
T  15249661 ttatttaacc 15249670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 146
Target Start/End: Complemental strand, 33757923 - 33757872
Alignment:
Q  95 gactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 146  Q
    |||||||||||||||||  ||||||||||| ||| |||||||||||||||||    
T  33757923 gactaaaatcaaaatttaatatatttatagggatgaaaaacttatttaaccc 33757872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 145
Target Start/End: Original strand, 22210257 - 22210321
Alignment:
Q  81 ttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaacc 145  Q
    ||||||||  || ||| ||||||||||||| ||||||||||||  ||| ||||||||||||||||    
T  22210257 ttttatttgttaaggaataaaatcaaaattcgttatatttataaggatgaaaaacttatttaacc 22210321  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 146
Target Start/End: Original strand, 33758154 - 33758205
Alignment:
Q  95 gactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 146  Q
    ||||||||||||||||  |||||||||||| ||| ||||| |||||||||||    
T  33758154 gactaaaatcaaaattcattatatttatagagatgaaaaatttatttaaccc 33758205  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 139
Target Start/End: Original strand, 194621 - 194661
Alignment:
Q  98 taaaatcaaaatttgttatatttatagcgataaaaaacttat 139  Q
    ||||||||||||||||||||||||||| || |||||||||||    
T  194621 taaaatcaaaatttgttatatttataggga-aaaaaacttat 194661  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 139
Target Start/End: Original strand, 309458 - 309498
Alignment:
Q  98 taaaatcaaaatttgttatatttatagcgataaaaaacttat 139  Q
    ||||||||||||||||||||||||||| || |||||||||||    
T  309458 taaaatcaaaatttgttatatttataggga-aaaaaacttat 309498  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 12871117 - 12871165
Alignment:
Q  94 ggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaa 143  Q
    ||||||||| ||||||||| ||||||||||| ||| ||||||||||||||    
T  12871117 ggactaaaa-caaaatttgatatatttatagtgatcaaaaacttatttaa 12871165  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 146
Target Start/End: Complemental strand, 36102194 - 36102133
Alignment:
Q  85 attttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 146  Q
    |||||| | |||||||||| |||| ||| ||||||||||| ||| |||||| ||||||||||    
T  36102194 attttagagggactaaaatgaaaagttggtatatttatagggatcaaaaacatatttaaccc 36102133  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 145
Target Start/End: Original strand, 1619673 - 1619724
Alignment:
Q  94 ggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaacc 145  Q
    ||||||||||||||||||||||||||||||| |||  || ||||||||||||    
T  1619673 ggactaaaatcaaaatttgttatatttatagggatctaatacttatttaacc 1619724  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 144
Target Start/End: Complemental strand, 14584994 - 14584929
Alignment:
Q  79 cgttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaac 144  Q
    ||||||||||| || |||||||||||||||||| |||||||| ||| ||  ||||| |||||||||    
T  14584994 cgttttattttttagggactaaaatcaaaatttattatatttttagagacgaaaaaattatttaac 14584929  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 146
Target Start/End: Original strand, 33005106 - 33005222
Alignment:
Q  31 ttagtgaccaaaaacaaaacaaaagaatctgtgaagataaaaacacatcgttttattttat-atggactaaaatcaaaatttgttatatttatagcgata 129  Q
    |||||||| ||||| ||||||||| ||| ||||| ||| |||||   || ||||||||| | | |||| |||| ||||||||  ||||||||||| ||      
T  33005106 ttagtgactaaaaataaaacaaaaaaatttgtgaggatgaaaacttctcattttatttttttagggacgaaaagcaaaatttaatatatttatagggacg 33005205  T
Q  130 aaaaacttatttaaccc 146  Q
    |||||||||||||||||    
T  33005206 aaaaacttatttaaccc 33005222  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 123
Target Start/End: Original strand, 33998831 - 33998915
Alignment:
Q  39 caaaaacaaaacaaaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttgttatatttata 123  Q
    ||||| |||||||||| ||| | ||| |||||||| |  || ||||||||| || ||||||||||||||||||  ||||||||||    
T  33998831 caaaatcaaaacaaaaaaatgtatgaggataaaaatatctcattttattttttagggactaaaatcaaaatttaatatatttata 33998915  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 45318584 - 45318526
Alignment:
Q  86 ttttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaac 144  Q
    ||||||| |||  |||| ||||||||| ||||||||||| ||| |||||||||||||||    
T  45318584 ttttataaggataaaaaacaaaatttgatatatttatagagattaaaaacttatttaac 45318526  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 146
Target Start/End: Complemental strand, 2963046 - 2962985
Alignment:
Q  85 attttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 146  Q
    |||||| | |||||||||  |||| ||| ||||||||||| |||||||||| ||||||||||    
T  2963046 attttagagggactaaaagaaaaagttggtatatttatagggataaaaaacatatttaaccc 2962985  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 144
Target Start/End: Complemental strand, 15998864 - 15998799
Alignment:
Q  79 cgttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaac 144  Q
    ||||||||||| || ||||||||||||||||||  ||||||| ||| ||  ||||| |||||||||    
T  15998864 cgttttattttttagggactaaaatcaaaatttactatatttttagagacgaaaaaattatttaac 15998799  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 145
Target Start/End: Complemental strand, 25245097 - 25245012
Alignment:
Q  60 tgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaacc 145  Q
    ||||||||| ||||||  || |||||| || || |||  |||||||||||| | ||| ||||||| ||| ||||||||||||||||    
T  25245097 tgtgaagatgaaaacatttcattttatattttagggatcaaaatcaaaattcgctatttttatagggatgaaaaacttatttaacc 25245012  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 145
Target Start/End: Complemental strand, 30218814 - 30218749
Alignment:
Q  80 gttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaacc 145  Q
    |||| |||||||| | | ||||||||||||| ||||||||||||  ||  ||||||||||||||||    
T  30218814 gtttaattttataggaattaaaatcaaaattcgttatatttatatggacgaaaaacttatttaacc 30218749  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 143
Target Start/End: Original strand, 37389815 - 37389856
Alignment:
Q  102 atcaaaatttgttatatttatagcgataaaaaacttatttaa 143  Q
    ||||||||| ||||||||||||  ||||||||||||||||||    
T  37389815 atcaaaattcgttatatttataaggataaaaaacttatttaa 37389856  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 134
Target Start/End: Complemental strand, 7475852 - 7475804
Alignment:
Q  86 ttttatatggactaaaatcaaaatttgttatatttatagcgataaaaaa 134  Q
    ||||||| | ||||||| ||||||||||||||||||||| || ||||||    
T  7475852 ttttataagaactaaaaacaaaatttgttatatttatagggacaaaaaa 7475804  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 13009095 - 13009035
Alignment:
Q  84 tattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaac 144  Q
    ||||||||  ||||||||| ||||||||| ||||||||||| ||  |||| ||||||||||    
T  13009095 tattttatgaggactaaaaacaaaatttgctatatttatagggactaaaagcttatttaac 13009035  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 30219063 - 30219115
Alignment:
Q  94 ggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 146  Q
    ||||||||||||||||| | ||||||||||  ||  |||||||||||||||||    
T  30219063 ggactaaaatcaaaattcgctatatttataaggacgaaaaacttatttaaccc 30219115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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