View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20382_high_9 (Length: 537)

Name: NF20382_high_9
Description: NF20382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20382_high_9
NF20382_high_9
[»] chr2 (13 HSPs)
chr2 (4-424)||(30390873-30391296)
chr2 (126-416)||(30381519-30381817)
chr2 (197-363)||(30480664-30480830)
chr2 (207-363)||(30427921-30428077)
chr2 (438-523)||(30391352-30391437)
chr2 (207-303)||(30421728-30421824)
chr2 (188-300)||(30472751-30472863)
chr2 (207-363)||(30465724-30465880)
chr2 (206-385)||(8382052-8382231)
chr2 (207-376)||(23766049-23766218)
chr2 (207-376)||(23785514-23785683)
chr2 (207-300)||(30434448-30434541)
chr2 (207-274)||(23788779-23788846)
[»] chr5 (1 HSPs)
chr5 (129-385)||(41631686-41631951)


Alignment Details
Target: chr2 (Bit Score: 370; Significance: 0; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 4 - 424
Target Start/End: Original strand, 30390873 - 30391296
Alignment:
Q  4 acatagaaagtcgtgtaggatatcatagttttagccgcccaaattctataaaaatctatggttcttatttcatgtatacacacttgtacttccttttatt 103  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  30390873 acatagaaagtcgtgtaggacatcatagttttagccacccaaattctataaaaatctatggttcttatttcatgtattcacacttgtacttccttttatt 30390972  T
Q  104 tcatt---acattctatacactttgcttcaccaattacaaacagagaaatggaatgggtttcaggcataattctcatcattggtttgatatggtcttgga 200  Q
    |||||   ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30390973 tcattgttacattctgtacactttgcttcaccaattacaaacagagaaatggaatgggtttcaggcataattctcatcattggtttgatatggtcttgga 30391072  T
Q  201 aggtgctgaattggttatggttgaagccaaagaagctagagaagctcttaaaagaacaaggacttaaagggaatccatataggcttttagttggagacat 300  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  30391073 aggtgctgaatttgttatggttgaagccaaagaagctagagaagctcttaagagaacaaggacttaaagggaatcaatataggcttttagttggagacat 30391172  T
Q  301 gaaggagtattttaacatggaaaaggaagccaaatccaaatctatgaatctctcggatgatatcacgccacgtgtcattccctactacaatgaaagtgtt 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  30391173 gaaggagtattttaacatggaaaaggaagccaaatccaaatctatgaacctctccgatgatatcacgccacgtgtcattccctactacaatgaaagtgtt 30391272  T
Q  401 agaattcatggtatgtatactgtt 424  Q
    |||||||||||||||| |||||||    
T  30391273 agaattcatggtatgtgtactgtt 30391296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 126 - 416
Target Start/End: Original strand, 30381519 - 30381817
Alignment:
Q  126 cttcaccaattacaaacagagaaatggaatgggtttcaggcataattctcatcattg---------gtttgatatggtcttggaaggtgctgaattggtt 216  Q
    ||||||||||||||||| ||||| ||||||||||||| || ||||||||||||||||         ||||||||||| | ||||||||| ||| || |||    
T  30381519 cttcaccaattacaaactgagaa-tggaatgggtttctgggataattctcatcattgtaacacttggtttgatatgggcatggaaggtgttgagtttgtt 30381617  T
Q  217 atggttgaagccaaagaagctagagaagctcttaaaagaacaaggacttaaagggaatccatataggcttttagttggagacatgaaggagtattttaac 316  Q
     ||| ||| |||||||||||||||||||||||||| |||||||||  || |||| ||| |||||||| ||||  |||| ||||| || ||   ||||||     
T  30381618 gtggctgaggccaaagaagctagagaagctcttaagagaacaaggctttcaaggaaattcatataggattttgcttggggacataaaagatctttttaag 30381717  T
Q  317 atggaaaaggaagccaaatccaaatctatgaatctctcggatgatatcacgccacgtgtcattccctactacaatgaaagtgttagaattcatggtatgt 416  Q
    |||||||| ||||||||||| ||||| ||||||||||| |||||||| || |||||||| |||||||||  | |  | ||||||| ||||||||||||||    
T  30381718 atggaaaaagaagccaaatcaaaatccatgaatctctccgatgatataacaccacgtgtaattccctacatccaacatagtgttaaaattcatggtatgt 30381817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 197 - 363
Target Start/End: Original strand, 30480664 - 30480830
Alignment:
Q  197 tggaaggtgctgaattggttatggttgaagccaaagaagctagagaagctcttaaaagaacaaggacttaaagggaatccatataggcttttagttggag 296  Q
    |||||| |||||| ||||| |||||||||||||||||||||||| |   |  ||| ||||||||| |||||||||||||| |||||| ||||||||||||    
T  30480664 tggaagatgctgatttggtcatggttgaagccaaagaagctagaaagagtgctaagagaacaaggtcttaaagggaatccttataggtttttagttggag 30480763  T
Q  297 acatgaaggagtattttaacatggaaaaggaagccaaatccaaatctatgaatctctcggatgatat 363  Q
    |||||||||||||||| || ||||||||||||| || ||||||| |  ||||||||||||| |||||    
T  30480764 acatgaaggagtatttaaagatggaaaaggaagtcagatccaaacccttgaatctctcggacgatat 30480830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 207 - 363
Target Start/End: Original strand, 30427921 - 30428077
Alignment:
Q  207 tgaattggttatggttgaagccaaagaagctagagaagctcttaaaagaacaaggacttaaagggaatccatataggcttttagttggagacatgaagga 306  Q
    |||||||||||||||||||||||||||||||||||||  || ||| |||||||||||| ||||||||| |||||||||||||||||||||||||||| ||    
T  30427921 tgaattggttatggttgaagccaaagaagctagagaaattcctaagagaacaaggactaaaagggaattcatataggcttttagttggagacatgaatga 30428020  T
Q  307 gtattttaacatggaaaaggaagccaaatccaaatctatgaatctctcggatgatat 363  Q
       | |||| |||  ||||||||| | ||| ||| |||||||||| || ||||||||    
T  30428021 tcttcttaagatgagaaaggaagcaacatctaaacctatgaatctttctgatgatat 30428077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 438 - 523
Target Start/End: Original strand, 30391352 - 30391437
Alignment:
Q  438 atgaatatatgttatttgactccattgtttaatgaaattaatatatttgaaatcattcacttagaaattagttcagttcagataaa 523  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  30391352 atgaatatatgttatttgactcaattgtttaatgaaatgaatatatttgaaatcattcatttagaaattagttcagttcagataaa 30391437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 207 - 303
Target Start/End: Original strand, 30421728 - 30421824
Alignment:
Q  207 tgaattggttatggttgaagccaaagaagctagagaagctcttaaaagaacaaggacttaaagggaatccatataggcttttagttggagacatgaa 303  Q
    |||||||||||||||||||||||||||||||||||||  || ||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  30421728 tgaattggttatggttgaagccaaagaagctagagaaattcctaagagaacaaggactaaaagggaattcatataggcttttagttggagacatgaa 30421824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 188 - 300
Target Start/End: Original strand, 30472751 - 30472863
Alignment:
Q  188 atatggtcttggaaggtgctgaattggttatggttgaagccaaagaagctagagaagctcttaaaagaacaaggacttaaagggaatccatataggcttt 287  Q
    |||||| | |||||| | ||||||||||||||||||||||||||||||||||||||  |  ||| |||||||||||| ||||||||| ||||||||||||    
T  30472751 atatgggcatggaagattctgaattggttatggttgaagccaaagaagctagagaaatttctaagagaacaaggactaaaagggaattcatataggcttt 30472850  T
Q  288 tagttggagacat 300  Q
    |||||||||||||    
T  30472851 tagttggagacat 30472863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 207 - 363
Target Start/End: Original strand, 30465724 - 30465880
Alignment:
Q  207 tgaattggttatggttgaagccaaagaagctagagaagctcttaaaagaacaaggacttaaagggaatccatataggcttttagttggagacatgaagga 306  Q
    ||||||||||||||||||||||||| |||||||| ||| |  ||| |||||||||||| ||||| ||| |||||||||||||||||||||||||||| ||    
T  30465724 tgaattggttatggttgaagccaaaaaagctagaaaagttgctaagagaacaaggactaaaaggaaattcatataggcttttagttggagacatgaatga 30465823  T
Q  307 gtattttaacatggaaaaggaagccaaatccaaatctatgaatctctcggatgatat 363  Q
       | |||| |||  ||||||||| | ||| ||| |||||||||| || ||||||||    
T  30465824 tcttcttaagatgagaaaggaagcaacatctaaacctatgaatctttctgatgatat 30465880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 206 - 385
Target Start/End: Complemental strand, 8382231 - 8382052
Alignment:
Q  206 ctgaattggttatggttgaagccaaagaagctagagaagctcttaaaagaacaaggacttaaagggaatccatataggcttttagttggagacatgaagg 305  Q
    ||||||||| | |||||||||||||||| ||||||||||||||||  ||||||||||  ||| || ||| | ||||| ||| |  |||| ||| ||||||    
T  8382231 ctgaattggatttggttgaagccaaagaggctagagaagctcttacgagaacaaggatgtaatggaaattcttatagacttgtgcttggggacttgaagg 8382132  T
Q  306 agtattttaacatggaaaaggaagccaaatccaaatctatgaatctctcggatgatatcacgccacgtgtcattccctac 385  Q
    | |  | ||| |||| |||| |||||||||||||| | ||| | || ||||||||||| |  || |||||||||||||||    
T  8382131 attcatataagatgggaaagaaagccaaatccaaacccatggaactgtcggatgatataatccctcgtgtcattccctac 8382052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 207 - 376
Target Start/End: Original strand, 23766049 - 23766218
Alignment:
Q  207 tgaattggttatggttgaagccaaagaagctagagaagctcttaaaagaacaaggacttaaagggaatccatataggcttttagttggagacatgaagga 306  Q
    |||||||| | ||| |||||||||||||| | |||||||| |||| ||||||||| ||| ||||||| || ||||| |||||  |||||||    |||||    
T  23766049 tgaattggatgtggctgaagccaaagaagatggagaagcttttaagagaacaaggccttcaagggaacccttatagacttttgcttggagatgcaaagga 23766148  T
Q  307 gtattttaacatggaaaaggaagccaaatccaaatctatgaatctctcggatgatatcacgccacgtgtc 376  Q
     ||||||   ||| ||||| |||   |||||||| | |||||||| |||||||||||  |||||||||||    
T  23766149 ttattttgtaatgcaaaagaaagttcaatccaaacccatgaatctgtcggatgatattgcgccacgtgtc 23766218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 207 - 376
Target Start/End: Complemental strand, 23785683 - 23785514
Alignment:
Q  207 tgaattggttatggttgaagccaaagaagctagagaagctcttaaaagaacaaggacttaaagggaatccatataggcttttagttggagacatgaagga 306  Q
    |||||||| | ||| |||||||||||||| |||||||||| |||| ||||||||| ||| ||||||| || ||||| |||||  |||||||    |||||    
T  23785683 tgaattggatgtggctgaagccaaagaagatagagaagcttttaagagaacaaggccttcaagggaacccttatagacttttgcttggagatgcaaagga 23785584  T
Q  307 gtattttaacatggaaaaggaagccaaatccaaatctatgaatctctcggatgatatcacgccacgtgtc 376  Q
     ||||||   ||| ||||| |||   |||||||| | |||||||| || ||||||||  |||||||||||    
T  23785583 ttattttgtgatgcaaaagaaagttcaatccaaacccatgaatctatctgatgatattgcgccacgtgtc 23785514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 207 - 300
Target Start/End: Original strand, 30434448 - 30434541
Alignment:
Q  207 tgaattggttatggttgaagccaaagaagctagagaagctcttaaaagaacaaggacttaaagggaatccatataggcttttagttggagacat 300  Q
    |||||||| |||||||||||||||| |||||||| ||     | | |||||||||||||||||| ||| |||| || |||||||||||||||||    
T  30434448 tgaattggatatggttgaagccaaaaaagctagaaaaagagctcagagaacaaggacttaaaggaaattcatacagacttttagttggagacat 30434541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 274
Target Start/End: Original strand, 23788779 - 23788846
Alignment:
Q  207 tgaattggttatggttgaagccaaagaagctagagaagctcttaaaagaacaaggacttaaagggaat 274  Q
    |||||||| | ||| |||||||||||||| |||||||||| |||| ||||||||| |||  |||||||    
T  23788779 tgaattggatgtggctgaagccaaagaagatagagaagcttttaagagaacaaggccttcgagggaat 23788846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 129 - 385
Target Start/End: Complemental strand, 41631951 - 41631686
Alignment:
Q  129 caccaattacaaacagagaaatggaatgggtttcaggcataattctcatcattg---------gtttgatatggtcttggaaggtgctgaattggttatg 219  Q
    ||||||||||||| ||| |||||||||||  |||| ||||||||| ||||||||         ||||||||||| | |||| | | ||||||||||| ||    
T  41631951 caccaattacaaagagataaatggaatggtattcaagcataattcccatcattgtgacagttggtttgatatgggcatggaggatactgaattggttgtg 41631852  T
Q  220 gttgaagccaaagaagctagagaagctcttaaaagaacaaggacttaaagggaatccatataggcttttagttggagacatgaaggagtattttaacatg 319  Q
    ||| | |||||||||||||||||| || |||| ||||||||| ||| ||||||||||||||||| ||||   ||||||||| |||||   | |||| |||    
T  41631851 gttaaggccaaagaagctagagaaactgttaagagaacaaggtcttcaagggaatccatataggattttgtatggagacataaaggatcttcttaagatg 41631752  T
Q  320 gaaaaggaagccaaatccaaatctatgaatctctcggatgatatcacgccacgtgtcattccctac 385  Q
    ||||||||||| |  || ||||| ||||||||| | |||||||| | ||||||||| |||||||||    
T  41631751 gaaaaggaagctaggtctaaatccatgaatctcaccgatgatataatgccacgtgtaattccctac 41631686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University