View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20382_low_1 (Length: 806)
Name: NF20382_low_1
Description: NF20382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20382_low_1 |
 | |
|
| [»] scaffold1079 (1 HSPs) |
| | |
|
| [»] scaffold0002 (2 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 464 - 796
Target Start/End: Original strand, 2692694 - 2693030
Alignment:
| Q |
464 |
ctattgcttgttcaaacagccatgtgaatggtcaggttgataaacgtcgtactggaatgctcccgtttgttttttatgatacttttgggtatgtttatct |
563 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2692694 |
ctattgcttgttcaaacagccatgtgaatggtcaggttgataaacgccgtactggaatgctcccgtttgttttttatgatacttttgggtatgtttatct |
2692793 |
T |
|
| Q |
564 |
ttacttttctaagttttaaataaaattcaaacacaaaaagtgtggtttgatttggtgtgtgattttgcaacaggtttgagcagtttgttgattatgctct |
663 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2692794 |
ttacttttctaagttttaaataaaattcaaacacaaaaagtgtggtttgatttggtgtgtgattttgcaacaggtttgagcagtttgttgattatgctct |
2692893 |
T |
|
| Q |
664 |
tgatgtaccaatgatatttgtgtatcgaaaaaataaatatattccatgtggtggcatgtcattccgggttattatcttttatttcttaaactatct---- |
759 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2692894 |
tgatgtaccaatgatatttgtgtatcgaaaaaataaatatattccatgtggtggcatgtcattccgggttattatcttttatttcttaaactatctatcc |
2692993 |
T |
|
| Q |
760 |
atccattacgtgttattttttcctttaatattcttgg |
796 |
Q |
| |
|
||||||||| |||| ||||||||||||||||| |||| |
|
|
| T |
2692994 |
atccattacatgttgttttttcctttaatattgttgg |
2693030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 3380444 - 3380338
Alignment:
| Q |
1 |
acacggtccaaggtagttctgaagctgttgatatgcacccaggcgtcaattgcatgaggccagacgtgatagagaagattgggcactgttcaaatacgcc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
3380444 |
acacggtccaaggtagttctgaagctgttgatatgcacccaggcgtcaattgcatgaggccaggcgtgatagagaagattgggcactgttcaaatacgcc |
3380345 |
T |
|
| Q |
101 |
caggcgt |
107 |
Q |
| |
|
||||||| |
|
|
| T |
3380344 |
caggcgt |
3380338 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 315 - 395
Target Start/End: Original strand, 2692545 - 2692625
Alignment:
| Q |
315 |
cagttagcaacagccttattttcaaattcacctttcatgcaaggagctccaaatggttatgtcagctttagaaggtgtata |
395 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2692545 |
cagttagcaacagctttattttcaaattcacctttcaagcaaggagctccaaacggttatgtcagctttagaaggtgtata |
2692625 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 609 - 755
Target Start/End: Original strand, 2684504 - 2684647
Alignment:
| Q |
609 |
tttgatttggtgtgtgattttgcaacaggtttgagcagtttgttgattatgctcttgatgtaccaatgatatttgtgtatcgaaaaaataaatatattcc |
708 |
Q |
| |
|
||||||||| |||||| || | | ||||||||||||| ||| |||| ||||||||||||||||| ||| ||||| | ||||||||||||| ||||||| | |
|
|
| T |
2684504 |
tttgatttgttgtgtgcttctcctacaggtttgagcaatttattgactatgctcttgatgtaccgatggtatttatttatcgaaaaaatagatatattgc |
2684603 |
T |
|
| Q |
709 |
atgtggtggcatgtcattccgggttattatcttttatttcttaaact |
755 |
Q |
| |
|
|||||||||||||||||||||| | ||||| ||||||||||||| |
|
|
| T |
2684604 |
ttgtggtggcatgtcattccggg---taatcttctatttcttaaact |
2684647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 190 - 316
Target Start/End: Original strand, 40230907 - 40231035
Alignment:
| Q |
190 |
tattcgtattgagactggaactcatagggaagaaaatagatttatgaatggaataaaatatgcaata-tttacagacaaaagtattcggttattggg-aa |
287 |
Q |
| |
|
||||| |||||||||| |||||||| ||||||||||||||||| ||| | ||| ||||||| || |||| ||||||||||||| |||||||||| || |
|
|
| T |
40230907 |
tattcttattgagactagaactcatcgggaagaaaatagatttgtgagttcaatgaaatatgtggtattttatagacaaaagtatttggttattgggaaa |
40231006 |
T |
|
| Q |
288 |
aaaatcaatatacttttaatgtcgaatca |
316 |
Q |
| |
|
|||||||||| |||||||| ||||||||| |
|
|
| T |
40231007 |
aaaatcaatacacttttaacgtcgaatca |
40231035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 315 - 390
Target Start/End: Original strand, 2678954 - 2679029
Alignment:
| Q |
315 |
cagttagcaacagccttattttcaaattcacctttcatgcaaggagctccaaatggttatgtcagctttagaaggt |
390 |
Q |
| |
|
|||||| |||| || |||||| | ||||||||||||| |||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
2678954 |
cagttatcaactgcattatttgcgaattcacctttcaagcaaggagttccaaatggttatgtcagcttaagaaggt |
2679029 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 516 - 575
Target Start/End: Original strand, 2679169 - 2679228
Alignment:
| Q |
516 |
tggaatgctcccgtttgttttttatgatacttttgggtatgtttatctttacttttctaa |
575 |
Q |
| |
|
|||||||||||| |||| |||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2679169 |
tggaatgctcccatttgcttttcatgatacttttgggtatgtttacatttacttttctaa |
2679228 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 104
Target Start/End: Complemental strand, 3380550 - 3380453
Alignment:
| Q |
7 |
tccaaggtagttctgaagctgttgatatgcacccaggcgtcaattgcatgaggccagacgtgatagagaagattgggcactgttcaaatacgcccagg |
104 |
Q |
| |
|
||||||| |||||| |||||||||| ||||||||| ||| |||| ||||||||||| ||||| ||| | |||| ||||||| |||||| |||||| |
|
|
| T |
3380550 |
tccaaggaagttctacagctgttgatctgcacccagccgtgaatttcatgaggccaggcgtgacagacagttttggccactgtttaaatacacccagg |
3380453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 179; Significance: 3e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 135 - 317
Target Start/End: Complemental strand, 16899687 - 16899505
Alignment:
| Q |
135 |
aacgaattggtgtggtaaattcaaatttaaatatatgaacagtaaataaaactagtattcgtattgagactggaactcatagggaagaaaatagatttat |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
16899687 |
aacgaattggtgtggtaaattcaaatttaaatatatgaacagtaaataaaactagtattcgtattgagactagaactcatagggaagaaaatagatttat |
16899588 |
T |
|
| Q |
235 |
gaatggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaatcag |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16899587 |
gaatggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaatcag |
16899505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 175; E-Value: 9e-94
Query Start/End: Original strand, 135 - 317
Target Start/End: Complemental strand, 18348202 - 18348020
Alignment:
| Q |
135 |
aacgaattggtgtggtaaattcaaatttaaatatatgaacagtaaataaaactagtattcgtattgagactggaactcatagggaagaaaatagatttat |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
18348202 |
aacgaattggtgtggtaaattcaaatttaaatatatgaacagtaaataaaactagtattcgtattgagactagaactcatagggaagaaaatagatttat |
18348103 |
T |
|
| Q |
235 |
gaatggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaatcag |
317 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18348102 |
gaatggaataaaaaatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaatcag |
18348020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 175; Significance: 9e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 9e-94
Query Start/End: Original strand, 135 - 317
Target Start/End: Original strand, 13236289 - 13236471
Alignment:
| Q |
135 |
aacgaattggtgtggtaaattcaaatttaaatatatgaacagtaaataaaactagtattcgtattgagactggaactcatagggaagaaaatagatttat |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
13236289 |
aacgaattggtgtggtaaattcaaatttaaatatatgaacagtaaataaaactagtattcgtattgagactagaactcatagggaagaaaatagatttat |
13236388 |
T |
|
| Q |
235 |
gaatggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaatcag |
317 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13236389 |
gaatggaataaaaaatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaatcag |
13236471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 144; Significance: 3e-75; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 139 - 314
Target Start/End: Original strand, 6352268 - 6352442
Alignment:
| Q |
139 |
aattggtgtggtaaattcaaatttaaatatatgaacagtaaataaaactagtattcgtattgagactggaactcatagggaagaaaatagatttatgaat |
238 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
6352268 |
aattggtgtggtagattcaaattttaatatatgaatagtaaataaaactagtattcgtattgagactagaactcatagggaagaaaatagatttatgaat |
6352367 |
T |
|
| Q |
239 |
ggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaat |
314 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6352368 |
ggaataaaatatgtaatatttacagacaaaagtattc-attattgggaaaaaatcaatatacttttaatgtcgaat |
6352442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 178 - 314
Target Start/End: Complemental strand, 10404203 - 10404067
Alignment:
| Q |
178 |
aaataaaactagtattcgtattgagactggaactcatagggaagaaaatagatttatgaatggaataaaatatgcaatatttacagacaaaagtattcgg |
277 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
10404203 |
aaataaaactagtattggtattgagactagaaatcatagggaagaaaatagatttatgaatggaataaaatatataatatttacaaacaaaagtattcgg |
10404104 |
T |
|
| Q |
278 |
ttattgggaaaaaatcaatatacttttaatgtcgaat |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10404103 |
ttattgggaaaaaatcaatatacttttaatgtcgaat |
10404067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1079 (Bit Score: 89; Significance: 2e-42; HSPs: 1)
Name: scaffold1079
Description:
Target: scaffold1079; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 135 - 317
Target Start/End: Complemental strand, 691 - 512
Alignment:
| Q |
135 |
aacgaattggtgtggtaaattcaaatttaaatatatgaacagtaaataaaactagtattcgtattgagactggaactcatagggaagaaaatagatttat |
234 |
Q |
| |
|
||||||||||||||||| ||||| || || ||||||||||||| |||||| |||| |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
691 |
aacgaattggtgtggtatattcatatcataacatatgaacagtaag---aactagcattcttattgagactcgaactcatagggaagaaaatagatttat |
595 |
T |
|
| Q |
235 |
gaatggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaatcag |
317 |
Q |
| |
|
| ||||||| |||||| | || ||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||| |
|
|
| T |
594 |
ggatggaatcaaatatatagtagttacagacaaaagtattcggttagtggtgaaaaatcaatatacttctaatgtcgaatcag |
512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 212 - 317
Target Start/End: Original strand, 42203278 - 42203382
Alignment:
| Q |
212 |
catagggaagaaaatagatttatgaatggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcg |
311 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| | ||||| |||||||||||||||||||| |
|
|
| T |
42203278 |
catatggaaaaaaatagatttatgaatggaataatatatgcaatatttacagacaaaagtgttcggttatt-gtaaaaattcaatatacttttaatgtcg |
42203376 |
T |
|
| Q |
312 |
aatcag |
317 |
Q |
| |
|
|||||| |
|
|
| T |
42203377 |
aatcag |
42203382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 56; Significance: 9e-23; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 228 - 315
Target Start/End: Original strand, 197865 - 197952
Alignment:
| Q |
228 |
gatttatgaatggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaatc |
315 |
Q |
| |
|
|||||||| ||||||| ||||| ||| |||||||||| |||||| |||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
197865 |
gatttatggatggaatcaaatacgcagtatttacagaaaaaagtcttcgtttattgggaaagaatcaatatacttttaatgtcgaatc |
197952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 236 - 315
Target Start/End: Original strand, 256308 - 256387
Alignment:
| Q |
236 |
aatggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaatc |
315 |
Q |
| |
|
|||||||| ||||| ||| |||||||||| |||||| |||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
256308 |
aatggaatcaaatacgcagtatttacagaaaaaagtcttcgtttattgggaaagaatcaatatacttttaatgtcgaatc |
256387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 634 - 705
Target Start/End: Complemental strand, 40924850 - 40924779
Alignment:
| Q |
634 |
caggtttgagcagtttgttgattatgctcttgatgtaccaatgatatttgtgtatcgaaaaaataaatatat |
705 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||| |||||| ||||| ||||| ||||| |||||||| |
|
|
| T |
40924850 |
caggtttgagcagtacgttgattttgctcttgatgttccaatgtattttgtctatcggaaaaagaaatatat |
40924779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 137
Target Start/End: Complemental strand, 10412144 - 10412115
Alignment:
| Q |
108 |
tgttgaaatagattcggaaacggaagaaac |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
10412144 |
tgttgaaatagattcggaaacggaagaaac |
10412115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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