View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20382_low_11 (Length: 482)

Name: NF20382_low_11
Description: NF20382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20382_low_11
NF20382_low_11
[»] chr4 (2 HSPs)
chr4 (2-465)||(33620623-33621090)
chr4 (1-51)||(20919334-20919384)
[»] chr3 (3 HSPs)
chr3 (2-51)||(40836434-40836483)
chr3 (1-51)||(36311151-36311201)
chr3 (2-51)||(33279840-33279889)
[»] chr1 (5 HSPs)
chr1 (1-61)||(24196516-24196576)
chr1 (1-59)||(2260369-2260427)
chr1 (3-44)||(4455048-4455089)
chr1 (3-51)||(16972107-16972155)
chr1 (1-61)||(24750024-24750084)
[»] scaffold0291 (1 HSPs)
scaffold0291 (1-51)||(10178-10228)
[»] chr5 (1 HSPs)
chr5 (3-49)||(4800935-4800981)
[»] chr2 (1 HSPs)
chr2 (1-51)||(32677815-32677865)
[»] chr7 (1 HSPs)
chr7 (1-61)||(23658763-23658823)


Alignment Details
Target: chr4 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 2 - 465
Target Start/End: Complemental strand, 33621090 - 33620623
Alignment:
Q  2 caaaatcgcaacattttaaaactaaggcgtcgaaaaatgcagtctagccttaaa-tttatttattgaaatttgtcgtcttaaccctcaggagtctggtaa 100  Q
    |||||||| |||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  33621090 caaaatcgtaacattttaaaacttaggcgtcgaaaaatgcagtctaaccttaaaatttatttattgaaatttgtcgtcttaaccctcaggggtctggtaa 33620991  T
Q  101 tccaagtttgatgtgataaagcctgaacaaggattcttacaactaaaatttgaatttgattatcttgaacctttcatcctaactcggataattaaccacc 200  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33620990 tccaagtttgatgtgataaagcctgaacaaggattcttatagctaaaatttgaatttgattatcttgaacctttcatcctaactcggataattaaccacc 33620891  T
Q  201 cgaactcaactgtttggtttattgtttgattaaatttaagcaattatagttttgatattaatgactgaacgacaaaactattatttaatttgcataact- 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||     
T  33620890 cgaactcaactgtttggtttattgtttgattaaatttaagcaattatagttttgatattaatgacttaacgacaaaactattatttaatttgcataactc 33620791  T
Q  300 --ctaatttaatgaaaaatttaaattgtgacgatcgcatttttgaattgagttacctggattaaatatggttgtggtgttagcaatgtcactatcagaaa 397  Q
      ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33620790 tactaatttaatgaaaaatttaaattgtgacgatcgcgtttttgaattgagttacctggattaaatatggttgtggtgttagcaatgtcactatcagaaa 33620691  T
Q  398 caatagaagatgaagaagaagatcgtgacatgttatgattatgatattgtttattaacagcatgatac 465  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  33620690 caatagaagatgaagaagaagatcgtgacatgttatgattatgatattgtttattaacaacatgatac 33620623  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 20919384 - 20919334
Alignment:
Q  1 ccaaaatcgcaacattttaaaactaaggcgtcgaaaaatgcagtctagcct 51  Q
    |||||||||||||||||| ||||| ||| |||||||| |||||| ||||||    
T  20919384 ccaaaatcgcaacattttgaaacttaggggtcgaaaagtgcagtttagcct 20919334  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 40836434 - 40836483
Alignment:
Q  2 caaaatcgcaacattttaaaactaaggcgtcgaaaaatgcagtctagcct 51  Q
    ||||||||||||||||||||||| ||| | ||||||||||||| ||||||    
T  40836434 caaaatcgcaacattttaaaacttagggggcgaaaaatgcagtttagcct 40836483  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 36311201 - 36311151
Alignment:
Q  1 ccaaaatcgcaacattttaaaactaaggcgtcgaaaaatgcagtctagcct 51  Q
    |||||||||||||||||||||||| ||| | |||||| |||||| ||||||    
T  36311201 ccaaaatcgcaacattttaaaacttaggggacgaaaagtgcagtttagcct 36311151  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 33279840 - 33279889
Alignment:
Q  2 caaaatcgcaacattttaaaactaaggcgtcgaaaaatgcagtctagcct 51  Q
    ||||||||||||||||||||||| ||| | |||||| | |||||||||||    
T  33279840 caaaatcgcaacattttaaaacttagggggcgaaaagttcagtctagcct 33279889  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 24196516 - 24196576
Alignment:
Q  1 ccaaaatcgcaacattttaaaactaaggcgtcgaaaaatgcagtctagccttaaatttatt 61  Q
    |||||||||||||||||||||||  ||| | |||||| |||||| ||||||||||| ||||    
T  24196516 ccaaaatcgcaacattttaaaacataggaggcgaaaagtgcagtttagccttaaatatatt 24196576  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 2260427 - 2260369
Alignment:
Q  1 ccaaaatcgcaacattttaaaactaaggcgtcgaaaaatgcagtctagccttaaattta 59  Q
    |||||||||||||||||||||||| | | |||||||| |||| | ||||| ||||||||    
T  2260427 ccaaaatcgcaacattttaaaacttaagggtcgaaaagtgcactttagccataaattta 2260369  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 4455089 - 4455048
Alignment:
Q  3 aaaatcgcaacattttaaaactaaggcgtcgaaaaatgcagt 44  Q
    |||||||||||||||||||||| ||| |||||||| ||||||    
T  4455089 aaaatcgcaacattttaaaacttaggggtcgaaaagtgcagt 4455048  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 16972107 - 16972155
Alignment:
Q  3 aaaatcgcaacattttaaaactaaggcgtcgaaaaatgcagtctagcct 51  Q
    |||||||||||||||||||||| ||| | |||||| |||||| ||||||    
T  16972107 aaaatcgcaacattttaaaacttagggggcgaaaagtgcagtttagcct 16972155  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 24750024 - 24750084
Alignment:
Q  1 ccaaaatcgcaacattttaaaactaaggcgtcgaaaaatgcagtctagccttaaatttatt 61  Q
    ||||||| |||||||||||||||  ||| | |||||| |||||| ||||||||||| ||||    
T  24750024 ccaaaattgcaacattttaaaacatagggggcgaaaagtgcagtttagccttaaatctatt 24750084  T

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Target: scaffold0291 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 10178 - 10228
Alignment:
Q  1 ccaaaatcgcaacattttaaaactaaggcgtcgaaaaatgcagtctagcct 51  Q
    ||||||||||||| |||||||||| ||| |||||||| |||||| ||||||    
T  10178 ccaaaatcgcaacgttttaaaacttaggggtcgaaaagtgcagtttagcct 10228  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 4800981 - 4800935
Alignment:
Q  3 aaaatcgcaacattttaaaactaaggcgtcgaaaaatgcagtctagc 49  Q
    |||||||||||||||||||||| ||| | ||||||||||||| ||||    
T  4800981 aaaatcgcaacattttaaaacttagggggcgaaaaatgcagtttagc 4800935  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 32677865 - 32677815
Alignment:
Q  1 ccaaaatcgcaacattttaaaactaaggcgtcgaaaaatgcagtctagcct 51  Q
    |||||||||||||||||||||||| ||| | ||||||||||| | ||||||    
T  32677865 ccaaaatcgcaacattttaaaacttaggaggcgaaaaatgcactttagcct 32677815  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 23658823 - 23658763
Alignment:
Q  1 ccaaaatcgcaacattttaaaactaaggcgtcgaaaaatgcagtctagccttaaatttatt 61  Q
    |||||||||||||||||||||||| |||  ||||||| |||||| || |||| | ||||||    
T  23658823 ccaaaatcgcaacattttaaaacttagggatcgaaaagtgcagtttaacctttattttatt 23658763  T

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