View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20382_low_13 (Length: 472)

Name: NF20382_low_13
Description: NF20382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20382_low_13
NF20382_low_13
[»] chr4 (37 HSPs)
chr4 (166-472)||(28693720-28694029)
chr4 (12-144)||(28694026-28694158)
chr4 (156-243)||(50384134-50384221)
chr4 (182-267)||(25818378-25818463)
chr4 (141-258)||(23444283-23444408)
chr4 (187-258)||(42375063-42375134)
chr4 (139-258)||(51265442-51265569)
chr4 (139-243)||(6271699-6271811)
chr4 (187-258)||(47661895-47661966)
chr4 (168-241)||(45591441-45591514)
chr4 (187-243)||(47404614-47404670)
chr4 (187-243)||(55090025-55090081)
chr4 (195-243)||(52028610-52028658)
chr4 (180-243)||(24006099-24006162)
chr4 (195-270)||(47762669-47762744)
chr4 (201-243)||(26186045-26186087)
chr4 (195-240)||(40789240-40789285)
chr4 (183-255)||(35682215-35682287)
chr4 (135-190)||(5048890-5048945)
chr4 (195-258)||(53954671-53954734)
chr4 (134-191)||(3862635-3862692)
chr4 (134-191)||(3871392-3871449)
chr4 (218-258)||(5048884-5048924)
chr4 (195-243)||(31430490-31430538)
chr4 (138-190)||(42375100-42375152)
chr4 (197-243)||(31532718-31532764)
chr4 (210-260)||(47661854-47661904)
chr4 (141-190)||(23444268-23444317)
chr4 (210-243)||(40789208-40789241)
chr4 (210-243)||(55090072-55090105)
chr4 (210-258)||(3862622-3862670)
chr4 (210-258)||(3871379-3871427)
chr4 (210-258)||(23444345-23444393)
chr4 (138-190)||(30709990-30710042)
chr4 (187-223)||(30861823-30861859)
chr4 (210-258)||(51265459-51265507)
chr4 (138-190)||(51265535-51265587)
[»] chr5 (33 HSPs)
chr5 (168-258)||(2953224-2953314)
chr5 (150-258)||(291105-291221)
chr5 (150-258)||(30117842-30117958)
chr5 (139-254)||(19655155-19655278)
chr5 (182-258)||(2093951-2094027)
chr5 (187-258)||(3899892-3899963)
chr5 (187-258)||(16971197-16971268)
chr5 (187-258)||(29699420-29699491)
chr5 (187-243)||(3180089-3180145)
chr5 (187-243)||(16439191-16439247)
chr5 (199-258)||(12913868-12913927)
chr5 (197-243)||(28818980-28819026)
chr5 (150-190)||(12913893-12913933)
chr5 (139-234)||(19598329-19598431)
chr5 (189-258)||(26662454-26662524)
chr5 (189-258)||(26934049-26934119)
chr5 (218-255)||(7137748-7137785)
chr5 (187-240)||(38134405-38134458)
chr5 (138-190)||(291187-291239)
chr5 (138-190)||(2953280-2953332)
chr5 (207-267)||(7009401-7009461)
chr5 (210-258)||(19655172-19655220)
chr5 (216-255)||(13312281-13312320)
chr5 (210-260)||(29699379-29699429)
chr5 (190-243)||(11983284-11983337)
chr5 (210-243)||(16439167-16439200)
chr5 (141-190)||(28819007-28819056)
chr5 (141-190)||(30117827-30117876)
chr5 (166-258)||(228383-228474)
chr5 (138-190)||(2093933-2093985)
chr5 (195-243)||(16802505-16802553)
chr5 (138-190)||(16971234-16971286)
chr5 (138-190)||(29699457-29699509)
[»] chr7 (28 HSPs)
chr7 (139-258)||(11016866-11016993)
chr7 (139-258)||(4290542-4290669)
chr7 (139-243)||(34854724-34854836)
chr7 (139-255)||(38975802-38975926)
chr7 (139-243)||(41018257-41018369)
chr7 (187-258)||(42628348-42628419)
chr7 (197-258)||(48000708-48000769)
chr7 (195-258)||(48000798-48000861)
chr7 (195-253)||(15027603-15027661)
chr7 (199-243)||(4649387-4649431)
chr7 (210-258)||(34854771-34854819)
chr7 (138-190)||(42628385-42628437)
chr7 (195-242)||(27028823-27028870)
chr7 (139-215)||(45231907-45231991)
chr7 (210-260)||(27028869-27028919)
chr7 (134-191)||(48000826-48000883)
chr7 (195-243)||(7671940-7671988)
chr7 (195-243)||(29053343-29053391)
chr7 (135-190)||(41945945-41946000)
chr7 (210-268)||(22764776-22764834)
chr7 (134-191)||(38975894-38975951)
chr7 (203-240)||(41945924-41945961)
chr7 (138-190)||(4290635-4290687)
chr7 (210-258)||(11016883-11016931)
chr7 (138-190)||(11016959-11017011)
chr7 (210-254)||(27028746-27028790)
chr7 (210-258)||(38975819-38975867)
chr7 (139-191)||(48000691-48000743)
[»] chr3 (31 HSPs)
chr3 (135-243)||(33689169-33689285)
chr3 (152-236)||(34060203-34060287)
chr3 (141-258)||(47492061-47492186)
chr3 (139-243)||(51046102-51046214)
chr3 (139-254)||(41752961-41753084)
chr3 (182-240)||(49418723-49418781)
chr3 (141-243)||(43139738-43139848)
chr3 (150-240)||(55223240-55223338)
chr3 (187-243)||(30476503-30476559)
chr3 (138-255)||(30734419-30734544)
chr3 (195-258)||(1801460-1801523)
chr3 (195-240)||(29031746-29031791)
chr3 (138-243)||(18321647-18321760)
chr3 (187-243)||(50550028-50550084)
chr3 (187-261)||(30904297-30904371)
chr3 (134-191)||(1801438-1801495)
chr3 (201-258)||(45103123-45103180)
chr3 (210-258)||(33689190-33689238)
chr3 (138-190)||(45103105-45103157)
chr3 (150-258)||(30580770-30580886)
chr3 (135-190)||(50524792-50524847)
chr3 (134-191)||(41753053-41753110)
chr3 (195-232)||(47677295-47677332)
chr3 (210-258)||(18321665-18321713)
chr3 (210-258)||(41752978-41753026)
chr3 (135-190)||(30580749-30580804)
chr3 (195-254)||(50524763-50524822)
chr3 (201-243)||(21024123-21024165)
chr3 (210-243)||(30476550-30476583)
chr3 (210-243)||(47677331-47677364)
chr3 (210-258)||(30580832-30580880)
[»] scaffold0180 (2 HSPs)
scaffold0180 (168-258)||(19136-19226)
scaffold0180 (150-190)||(19130-19170)
[»] chr8 (23 HSPs)
chr8 (139-258)||(10086754-10086881)
chr8 (139-258)||(35440983-35441110)
chr8 (139-258)||(5033158-5033285)
chr8 (139-243)||(8243417-8243529)
chr8 (139-258)||(33841605-33841732)
chr8 (187-243)||(34229694-34229750)
chr8 (138-253)||(5667093-5667216)
chr8 (135-243)||(8796415-8796531)
chr8 (168-243)||(31159885-31159960)
chr8 (183-243)||(6296654-6296714)
chr8 (187-243)||(34541832-34541888)
chr8 (197-243)||(35031643-35031689)
chr8 (210-258)||(10086771-10086819)
chr8 (211-258)||(5667111-5667158)
chr8 (141-190)||(43844559-43844608)
chr8 (210-258)||(2581839-2581887)
chr8 (210-254)||(4958617-4958661)
chr8 (183-243)||(4958648-4958707)
chr8 (138-190)||(5033251-5033303)
chr8 (210-258)||(8243464-8243512)
chr8 (210-258)||(35441045-35441093)
chr8 (150-190)||(43844479-43844519)
chr8 (195-243)||(45191156-45191204)
[»] chr2 (29 HSPs)
chr2 (139-258)||(16514421-16514548)
chr2 (187-255)||(14229370-14229438)
chr2 (182-240)||(6721999-6722057)
chr2 (156-243)||(15011294-15011389)
chr2 (195-258)||(6217238-6217301)
chr2 (187-258)||(38933640-38933711)
chr2 (187-243)||(2828637-2828693)
chr2 (187-243)||(2894016-2894072)
chr2 (139-258)||(29508704-29508832)
chr2 (150-190)||(33018635-33018675)
chr2 (195-258)||(14470606-14470669)
chr2 (184-243)||(37961756-37961815)
chr2 (150-191)||(9173070-9173111)
chr2 (209-258)||(33018620-33018669)
chr2 (182-243)||(37762030-37762091)
chr2 (138-190)||(38933677-38933729)
chr2 (151-190)||(2143899-2143938)
chr2 (140-191)||(6217222-6217273)
chr2 (195-258)||(29925584-29925647)
chr2 (205-243)||(14464584-14464622)
chr2 (210-260)||(15011292-15011342)
chr2 (192-254)||(32545846-32545908)
chr2 (154-183)||(1945424-1945453)
chr2 (195-240)||(8534207-8534252)
chr2 (197-258)||(14892323-14892384)
chr2 (195-240)||(24115981-24116026)
chr2 (150-190)||(14229361-14229401)
chr2 (150-190)||(24116010-24116050)
chr2 (138-190)||(32545878-32545930)
[»] chr1 (37 HSPs)
chr1 (183-243)||(47303444-47303504)
chr1 (139-258)||(29179611-29179738)
chr1 (139-258)||(48993931-48994058)
chr1 (195-243)||(8337880-8337928)
chr1 (187-258)||(32540762-32540833)
chr1 (182-244)||(45728335-45728397)
chr1 (195-243)||(4609057-4609105)
chr1 (187-243)||(34062262-34062318)
chr1 (187-243)||(48604976-48605032)
chr1 (188-243)||(1819518-1819573)
chr1 (187-258)||(15220864-15220935)
chr1 (139-243)||(37155043-37155155)
chr1 (166-243)||(28928808-28928885)
chr1 (187-243)||(741531-741587)
chr1 (187-243)||(17127593-17127649)
chr1 (187-243)||(46333975-46334031)
chr1 (187-258)||(5995422-5995493)
chr1 (187-258)||(33219626-33219697)
chr1 (139-243)||(48498412-48498524)
chr1 (141-243)||(44706812-44706923)
chr1 (187-243)||(9157363-9157419)
chr1 (195-255)||(29371429-29371489)
chr1 (195-234)||(1091582-1091621)
chr1 (141-185)||(15220906-15220950)
chr1 (138-190)||(33219663-33219715)
chr1 (139-191)||(46931994-46932046)
chr1 (210-258)||(46932011-46932059)
chr1 (187-258)||(49444927-49444996)
chr1 (201-240)||(38674537-38674576)
chr1 (134-191)||(5995458-5995515)
chr1 (210-243)||(29371397-29371430)
chr1 (210-255)||(37155063-37155108)
chr1 (195-243)||(5694919-5694966)
chr1 (210-258)||(21630056-21630104)
chr1 (210-258)||(29179673-29179721)
chr1 (138-190)||(48993913-48993965)
chr1 (138-190)||(49444909-49444961)
[»] chr6 (13 HSPs)
chr6 (187-243)||(551194-551250)
chr6 (184-243)||(2315333-2315392)
chr6 (187-258)||(12343153-12343224)
chr6 (183-243)||(10521878-10521938)
chr6 (187-258)||(24618615-24618686)
chr6 (201-258)||(17750969-17751026)
chr6 (187-243)||(13043510-13043566)
chr6 (211-253)||(17750921-17750963)
chr6 (150-231)||(24587469-24587558)
chr6 (210-258)||(24587475-24587523)
chr6 (139-191)||(24975749-24975801)
chr6 (209-258)||(24975766-24975815)
chr6 (150-190)||(24618609-24618649)
[»] scaffold0016 (1 HSPs)
scaffold0016 (187-258)||(49717-49788)
[»] scaffold0481 (1 HSPs)
scaffold0481 (150-234)||(2925-3006)
[»] scaffold0161 (2 HSPs)
scaffold0161 (139-258)||(27234-27361)
scaffold0161 (139-190)||(27217-27268)
[»] scaffold1033 (1 HSPs)
scaffold1033 (187-244)||(2266-2323)
[»] scaffold1029 (1 HSPs)
scaffold1029 (187-244)||(2266-2323)
[»] scaffold0586 (3 HSPs)
scaffold0586 (187-258)||(7061-7132)
scaffold0586 (210-255)||(7123-7168)
scaffold0586 (150-190)||(7055-7095)
[»] scaffold0047 (1 HSPs)
scaffold0047 (195-243)||(63818-63866)


Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 166 - 472
Target Start/End: Complemental strand, 28694029 - 28693720
Alignment:
Q  166 ttggtgatattggtcaatcataatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtcgtcaa------tgtcacccaag 259  Q
    ||||||| |||||  |||||||||| || ||||||||||||||||||||||||||||| ||||||||||  ||||||| || |      |||||||||||    
T  28694029 ttggtgacattggcgaatcataatgtttgtgtttctctctctttcacaaacattgtgatattgtgattggtcaatgtcatccaactttatgtcacccaag 28693930  T
Q  260 tgatatccaccccatgcaccatcacctcaggtatcaacaaactaccatattctaactcacttgttcctacttacatggagctaatttgaatccaatatgt 359  Q
    || |||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  28693929 tgctatccacctcatgcaccatcacctcacgaatcaacaaactaccatattctaactcacttgttcctacttacatggatctaatttgaatccaatatgt 28693830  T
Q  360 gctccttcctatctcaaattcaattactccatgcagttggaacatgtcaataacaaactgaaccaaattaagagaggaaagatcgcaacaaccacagagc 459  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||   ||||||||||||    
T  28693829 gctccttcctatctcaaattcaattactccatgcagttggaacatgtcaataataaactgaaccaaattaagagaggaaagatcg---caaccacagagc 28693733  T
Q  460 acatcatcagata 472  Q
    |||||||||||||    
T  28693732 acatcatcagata 28693720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 12 - 144
Target Start/End: Complemental strand, 28694158 - 28694026
Alignment:
Q  12 aagaaaactcactaagaatatgccatgtagcctcataaggggaccaaatccaagttcacccgaggcgaccacctcatcttacaacatggtacatgtcata 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28694158 aagaaaactcactaagaatatgccatgtagcctcataaggggaccaaatccaagttcacccgaggcgaccacctcatcttacaacatggtacatgtcata 28694059  T
Q  112 atcttatctcatacagcaccatgtaacacttgg 144  Q
    |||||| |||| |||||||| |||| |||||||    
T  28694058 atcttacctcagacagcaccttgtagcacttgg 28694026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 156 - 243
Target Start/End: Complemental strand, 50384221 - 50384134
Alignment:
Q  156 ttgggtgacattggtgatattggtcaatcataatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtc 243  Q
    ||||||||||||||||| ||| |||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  50384221 ttgggtgacattggtgacattcgtcaatcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatgtc 50384134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 182 - 267
Target Start/End: Complemental strand, 25818463 - 25818378
Alignment:
Q  182 atcataatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaagtgatatcc 267  Q
    |||| |||| || |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  25818463 atcacaatgattgtgtttctctctctttcacaatcattgtgacattgtgattgaccaatgtcatcaatgtcacccaagtgttatcc 25818378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 141 - 258
Target Start/End: Complemental strand, 23444408 - 23444283
Alignment:
Q  141 ttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatgc--------ttttgtttctctctctttcacaaacattgtgacattgtgat 232  Q
    |||||| | ||||||||||||||||||||||| ||||| |||||| |||||        || |||||||||||||||||||| |||||||||||||||||    
T  23444408 ttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgat 23444309  T
Q  233 tgaccaatgtcgtcaatgtcacccaa 258  Q
    ||  |||||||  |||||||||||||    
T  23444308 tggtcaatgtcaccaatgtcacccaa 23444283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 187 - 258
Target Start/End: Original strand, 42375063 - 42375134
Alignment:
Q  187 aatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaa 258  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||  |||||||||||||    
T  42375063 aatgcttgtgtttctctctctttcacaagcattgtgacattgtgattgatcaatgtcaccaatgtcacccaa 42375134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 139 - 258
Target Start/End: Original strand, 51265442 - 51265569
Alignment:
Q  139 acttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatgc--------ttttgtttctctctctttcacaaacattgtgacattgtg 230  Q
    |||||||| | ||||||||||||||||||||||| ||||| |||||| |||||        || |||||||||||||||||||| |||||||||||| ||    
T  51265442 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattatg 51265541  T
Q  231 attgaccaatgtcgtcaatgtcacccaa 258  Q
    ||||  |||||||  |||||||||||||    
T  51265542 attggtcaatgtcaccaatgtcacccaa 51265569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 139 - 243
Target Start/End: Original strand, 6271699 - 6271811
Alignment:
Q  139 acttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatgc--------ttttgtttctctctctttcacaaacattgtgacattgtg 230  Q
    |||||||| | |||||||||||||| |||||||| ||||| |||||| |||||        || |||||||||||||||||||| |||||||||||||||    
T  6271699 acttgggtgacatagagttgggtgatattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtg 6271798  T
Q  231 attgaccaatgtc 243  Q
    |||| ||||||||    
T  6271799 attggccaatgtc 6271811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 187 - 258
Target Start/End: Original strand, 47661895 - 47661966
Alignment:
Q  187 aatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaa 258  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||  |||||||  |||||||||||||    
T  47661895 aatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaa 47661966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 168 - 241
Target Start/End: Complemental strand, 45591514 - 45591441
Alignment:
Q  168 ggtgatattggtcaatcataatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatg 241  Q
    ||||| |||||||||||| |||| || |||||||||||||||||||| |||||||||||| |||||||| ||||    
T  45591514 ggtgacattggtcaatcacaatgtttgtgtttctctctctttcacaagcattgtgacattatgattgacgaatg 45591441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 47404670 - 47404614
Alignment:
Q  187 aatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtc 243  Q
    |||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  47404670 aatgcttgggtttctctctctttcacaagcattgtgacattgtgattgaccaatgtc 47404614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 55090081 - 55090025
Alignment:
Q  187 aatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtc 243  Q
    ||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  55090081 aatgcttgtgtctctctctctttcacaagcattgtgacattgtgattgaccaatgtc 55090025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 195 - 243
Target Start/End: Original strand, 52028610 - 52028658
Alignment:
Q  195 tgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtc 243  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  52028610 tgtttctctctctttcacaagcattgtgacattgtgattggccaatgtc 52028658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 180 - 243
Target Start/End: Complemental strand, 24006162 - 24006099
Alignment:
Q  180 caatcataatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtc 243  Q
    |||||| |||| || |||||||||||||||||||| ||||||| ||||||||||| ||||||||    
T  24006162 caatcacaatgtttatgtttctctctctttcacaagcattgtgtcattgtgattggccaatgtc 24006099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 195 - 270
Target Start/End: Original strand, 47762669 - 47762744
Alignment:
Q  195 tgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaagtgatatccacc 270  Q
    |||||||||||||||||||| |||||||||||| || ||||||||||||  |||| ||| |||| || ||||||||    
T  47762669 tgtttctctctctttcacaagcattgtgacattatggttgaccaatgtcaccaatatcatccaactgctatccacc 47762744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 201 - 243
Target Start/End: Complemental strand, 26186087 - 26186045
Alignment:
Q  201 tctctctttcacaaacattgtgacattgtgattgaccaatgtc 243  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  26186087 tctctctttcacaagcattgtgacattgtgattgaccaatgtc 26186045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 40789240 - 40789285
Alignment:
Q  195 tgtttctctctctttcacaaacattgtgacattgtgattgaccaat 240  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||    
T  40789240 tgtttctctctctttcacaagcattgtgacattgtgattggccaat 40789285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 255
Target Start/End: Original strand, 35682215 - 35682287
Alignment:
Q  183 tcataatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacc 255  Q
    ||||||| ||| ||||||||| |||||||||| ||||||||||||||||| |  |||||||  ||||||||||    
T  35682215 tcataatacttgtgtttctctatctttcacaagcattgtgacattgtgatcggtcaatgtcaccaatgtcacc 35682287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 190
Target Start/End: Complemental strand, 5048945 - 5048890
Alignment:
Q  135 taacacttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatg 190  Q
    |||||||||| | | ||||||||||||||||||| ||| |||||||||||||||||    
T  5048945 taacacttggatgacatagagttgggtgacattgatgacattggtcaatcataatg 5048890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 195 - 258
Target Start/End: Original strand, 53954671 - 53954734
Alignment:
Q  195 tgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaa 258  Q
    |||||||| ||||||||||| |||||||||||||| ||||  |||||||  |||||||||||||    
T  53954671 tgtttctcactctttcacaagcattgtgacattgtaattggacaatgtcaccaatgtcacccaa 53954734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 3862692 - 3862635
Alignment:
Q  134 gtaacacttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatgc 191  Q
    ||||||||| ||| | ||||||||||||||||||||||| ||||| |||||| |||||    
T  3862692 gtaacacttaggtgacatagagttgggtgacattggtgacattggccaatcacaatgc 3862635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 3871449 - 3871392
Alignment:
Q  134 gtaacacttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatgc 191  Q
    ||||||||| ||| | ||||||||||||||||||||||| ||||| |||||| |||||    
T  3871449 gtaacacttaggtgacatagagttgggtgacattggtgacattggccaatcacaatgc 3871392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 218 - 258
Target Start/End: Original strand, 5048884 - 5048924
Alignment:
Q  218 ttgtgacattgtgattgaccaatgtcgtcaatgtcacccaa 258  Q
    |||||||||| ||||||||||||||| ||||||||||||||    
T  5048884 ttgtgacattatgattgaccaatgtcatcaatgtcacccaa 5048924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 31430538 - 31430490
Alignment:
Q  195 tgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtc 243  Q
    ||||||||||||||||| || |||||||||||||||||||  |||||||    
T  31430538 tgtttctctctctttcataagcattgtgacattgtgattggtcaatgtc 31430490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 42375152 - 42375100
Alignment:
Q  138 cacttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatg 190  Q
    ||||||||| | ||||||||||||||||||||||| |||| ||||||| ||||    
T  42375152 cacttgggtgacatagagttgggtgacattggtgacattgatcaatcacaatg 42375100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 243
Target Start/End: Complemental strand, 31532764 - 31532718
Alignment:
Q  197 tttctctctctttcacaaacattgtgacattgtgattgaccaatgtc 243  Q
    ||||||||||||| ||| | ||||||||||||||||||| |||||||    
T  31532764 tttctctctcttttacatatattgtgacattgtgattgaacaatgtc 31532718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 47661904 - 47661854
Alignment:
Q  210 cacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaagt 260  Q
    ||||| ||||||| ||||||||||| ||||||||  |||||||||||||||    
T  47661904 cacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaagt 47661854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 190
Target Start/End: Original strand, 23444268 - 23444317
Alignment:
Q  141 ttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatg 190  Q
    |||||||| ||||||||||||||||||||||| ||||  |||||| ||||    
T  23444268 ttgggtaacatagagttgggtgacattggtgacattgaccaatcacaatg 23444317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 243
Target Start/End: Complemental strand, 40789241 - 40789208
Alignment:
Q  210 cacaaacattgtgacattgtgattgaccaatgtc 243  Q
    ||||||||||||||||||||||||| ||||||||    
T  40789241 cacaaacattgtgacattgtgattggccaatgtc 40789208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 243
Target Start/End: Original strand, 55090072 - 55090105
Alignment:
Q  210 cacaaacattgtgacattgtgattgaccaatgtc 243  Q
    ||||| ||||||||||||||||||||||||||||    
T  55090072 cacaagcattgtgacattgtgattgaccaatgtc 55090105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 258
Target Start/End: Original strand, 3862622 - 3862670
Alignment:
Q  210 cacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaa 258  Q
    ||||| ||||||| ||||||||||| ||||||||  |||||||||||||    
T  3862622 cacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaa 3862670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 258
Target Start/End: Original strand, 3871379 - 3871427
Alignment:
Q  210 cacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaa 258  Q
    ||||| ||||||| ||||||||||| ||||||||  |||||||||||||    
T  3871379 cacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaa 3871427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 258
Target Start/End: Original strand, 23444345 - 23444393
Alignment:
Q  210 cacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaa 258  Q
    ||||| ||||||| ||||||||||| ||||||||  |||||||||||||    
T  23444345 cacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaa 23444393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 30710042 - 30709990
Alignment:
Q  138 cacttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatg 190  Q
    ||||||||| | |||||||| |||||||||||||| ||||| |||||| ||||    
T  30710042 cacttgggtgacatagagttaggtgacattggtgacattggccaatcacaatg 30709990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 187 - 223
Target Start/End: Complemental strand, 30861859 - 30861823
Alignment:
Q  187 aatgcttttgtttctctctctttcacaaacattgtga 223  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  30861859 aatgcttgtgtttctctctctttcacaagcattgtga 30861823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 258
Target Start/End: Complemental strand, 51265507 - 51265459
Alignment:
Q  210 cacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaa 258  Q
    ||||| ||||||| ||||||||||| ||||||||  |||||||||||||    
T  51265507 cacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaa 51265459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 51265587 - 51265535
Alignment:
Q  138 cacttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatg 190  Q
    ||||||||| |  |||||||||||||||||||||| ||||  |||||||||||    
T  51265587 cacttgggtgacttagagttgggtgacattggtgacattgaccaatcataatg 51265535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 168 - 258
Target Start/End: Original strand, 2953224 - 2953314
Alignment:
Q  168 ggtgatattggtcaatcataatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaa 258  Q
    ||||| |||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||  |||||||||||||    
T  2953224 ggtgacattggtcaatcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatgtcaccaatgtcacccaa 2953314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 150 - 258
Target Start/End: Original strand, 291105 - 291221
Alignment:
Q  150 atagagttgggtgacattggtgatattggtcaatcataatgc--------ttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatg 241  Q
    ||||||||||||||||||||||| ||||| |||||| |||||        || | ||||| ||||||||||||||||||||||||||||||||| |||||    
T  291105 atagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtatttctttctctttcacaaacattgtgacattgtgattgatcaatg 291204  T
Q  242 tcgtcaatgtcacccaa 258  Q
    ||  |||||||||||||    
T  291205 tcaccaatgtcacccaa 291221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 150 - 258
Target Start/End: Complemental strand, 30117958 - 30117842
Alignment:
Q  150 atagagttgggtgacattggtgatattggtcaatcataatgc--------ttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatg 241  Q
    |||||||||| |||||||||||||||||||||||||||||||        || ||||||||||| ||||| ||||||||||||||||||||||  ||||     
T  30117958 atagagttggatgacattggtgatattggtcaatcataatgccacaatgcttgtgtttctctctttttcataaacattgtgacattgtgattggtcaata 30117859  T
Q  242 tcgtcaatgtcacccaa 258  Q
    ||  |||||||||||||    
T  30117858 tcaccaatgtcacccaa 30117842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 139 - 254
Target Start/End: Original strand, 19655155 - 19655278
Alignment:
Q  139 acttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatgc--------ttttgtttctctctctttcacaaacattgtgacattgtg 230  Q
    |||||||| | ||||||||||||||||||||||| ||||| |||||| |||||        || |||||||||||||||||||| |||||||||||||||    
T  19655155 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtgacattgtg 19655254  T
Q  231 attgaccaatgtcgtcaatgtcac 254  Q
    ||||  |||||||  |||||||||    
T  19655255 attggacaatgtcaccaatgtcac 19655278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 182 - 258
Target Start/End: Complemental strand, 2094027 - 2093951
Alignment:
Q  182 atcataatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaa 258  Q
    |||||||||||| |||||||||||||||||||| |||| ||||||||||||||| |||||||  |||| ||||||||    
T  2094027 atcataatgcttgtgtttctctctctttcacaagcattatgacattgtgattgatcaatgtcaccaatatcacccaa 2093951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 187 - 258
Target Start/End: Original strand, 3899892 - 3899963
Alignment:
Q  187 aatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaa 258  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||  |||||||  |||||||||||||    
T  3899892 aatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaa 3899963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 187 - 258
Target Start/End: Original strand, 16971197 - 16971268
Alignment:
Q  187 aatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaa 258  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||  |||||||  |||||||||||||    
T  16971197 aatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaa 16971268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 187 - 258
Target Start/End: Original strand, 29699420 - 29699491
Alignment:
Q  187 aatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaa 258  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||  |||| ||||||||    
T  29699420 aatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatgtcaccaatatcacccaa 29699491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 3180145 - 3180089
Alignment:
Q  187 aatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtc 243  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  3180145 aatgcttgtgtttctctctctttcacaaacattgtgacattatgattgatcaatgtc 3180089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 16439191 - 16439247
Alignment:
Q  187 aatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtc 243  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||    
T  16439191 aatgcttgtgtttctctctctttcacaagcattgtgacattgtgattgatcaatgtc 16439247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 12913868 - 12913927
Alignment:
Q  199 tctctctctttcacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaa 258  Q
    |||||||||||||||| |||| |||||||||||||||||||| ||  |||||||||||||    
T  12913868 tctctctctttcacaagcattatgacattgtgattgaccaatatcaccaatgtcacccaa 12913927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 197 - 243
Target Start/End: Original strand, 28818980 - 28819026
Alignment:
Q  197 tttctctctctttcacaaacattgtgacattgtgattgaccaatgtc 243  Q
    |||||||||||||||||| |||||||||||| |||||||||||||||    
T  28818980 tttctctctctttcacaagcattgtgacattatgattgaccaatgtc 28819026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 150 - 190
Target Start/End: Complemental strand, 12913933 - 12913893
Alignment:
Q  150 atagagttgggtgacattggtgatattggtcaatcataatg 190  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  12913933 atagagttgggtgacattggtgatattggtcaatcacaatg 12913893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 234
Target Start/End: Original strand, 19598329 - 19598431
Alignment:
Q  139 acttgggtaaaatagagttgggtgacattggtgatattggtcaat--------cataatgcttttgtttctctctctttcacaaacattgtgacattgtg 230  Q
    |||||||| | |||||||||||| |||||||||| ||||||||||        || ||||||| |||||||||||||||||||| |||| ||||||| ||    
T  19598329 acttgggtgacatagagttgggtaacattggtgacattggtcaatcacaataccacaatgcttgtgtttctctctctttcacaagcatt-tgacattatg 19598427  T
Q  231 attg 234  Q
    ||||    
T  19598428 attg 19598431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 189 - 258
Target Start/End: Original strand, 26662454 - 26662524
Alignment:
Q  189 tgcttttgtttctctctctttcacaaacattgtgacattgtga-ttgaccaatgtcgtcaatgtcacccaa 258  Q
    ||||| ||||||||||| ||||||||  ||||||||||||||| ||||||||||||  |||| ||||||||    
T  26662454 tgcttgtgtttctctctttttcacaagtattgtgacattgtgatttgaccaatgtcaccaatatcacccaa 26662524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 189 - 258
Target Start/End: Original strand, 26934049 - 26934119
Alignment:
Q  189 tgcttttgtttctctctctttcacaaacattgtgacattgtga-ttgaccaatgtcgtcaatgtcacccaa 258  Q
    ||||| ||||||||||| ||||||||  ||||||||||||||| ||||||||||||  |||| ||||||||    
T  26934049 tgcttgtgtttctctctttttcacaagtattgtgacattgtgatttgaccaatgtcaccaatatcacccaa 26934119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 218 - 255
Target Start/End: Original strand, 7137748 - 7137785
Alignment:
Q  218 ttgtgacattgtgattgaccaatgtcgtcaatgtcacc 255  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  7137748 ttgtgacattgtggttgaccaatgtcgtcaatgtcacc 7137785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 38134458 - 38134405
Alignment:
Q  187 aatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaat 240  Q
    ||||||| ||||||| |||||||||| | ||||||||||||||||||| |||||    
T  38134458 aatgcttgtgtttctttctctttcactagcattgtgacattgtgattggccaat 38134405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 291239 - 291187
Alignment:
Q  138 cacttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatg 190  Q
    ||||||||| | ||||||||||||||||||||||| |||| ||||||| ||||    
T  291239 cacttgggtgatatagagttgggtgacattggtgacattgatcaatcacaatg 291187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 2953332 - 2953280
Alignment:
Q  138 cacttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatg 190  Q
    ||||||||| | ||||||||||||||||||||||| ||||| |||||| ||||    
T  2953332 cacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatg 2953280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 207 - 267
Target Start/End: Original strand, 7009401 - 7009461
Alignment:
Q  207 tttcacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaagtgatatcc 267  Q
    |||||||| |||||||| |||||||||||||||| ||  |||||||| ||||||| |||||    
T  7009401 tttcacaagcattgtgatattgtgattgaccaatatcaccaatgtcatccaagtgctatcc 7009461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 210 - 258
Target Start/End: Complemental strand, 19655220 - 19655172
Alignment:
Q  210 cacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaa 258  Q
    ||||||||||||| ||||||||||| ||||||||  |||||||||||||    
T  19655220 cacaaacattgtggcattgtgattggccaatgtcaccaatgtcacccaa 19655172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 255
Target Start/End: Complemental strand, 13312320 - 13312281
Alignment:
Q  216 cattgtgacattgtgattgaccaatgtcgtcaatgtcacc 255  Q
    |||||||||||||||||||| ||||||| |||||||||||    
T  13312320 cattgtgacattgtgattgatcaatgtcatcaatgtcacc 13312281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 29699429 - 29699379
Alignment:
Q  210 cacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaagt 260  Q
    ||||| ||||||| ||||||||||| ||||||||  |||||||||||||||    
T  29699429 cacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaagt 29699379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 243
Target Start/End: Complemental strand, 11983337 - 11983284
Alignment:
Q  190 gcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtc 243  Q
    |||||| | ||||||||| || |||| ||||||||||| |||||||||||||||    
T  11983337 gcttttatctctctctctctctcaaagattgtgacattttgattgaccaatgtc 11983284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 243
Target Start/End: Complemental strand, 16439200 - 16439167
Alignment:
Q  210 cacaaacattgtgacattgtgattgaccaatgtc 243  Q
    ||||| ||||||||||||||||||||||||||||    
T  16439200 cacaagcattgtgacattgtgattgaccaatgtc 16439167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 190
Target Start/End: Complemental strand, 28819056 - 28819007
Alignment:
Q  141 ttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatg 190  Q
    |||||| | ||||||||| |||| |||||||| |||||||||||||||||    
T  28819056 ttgggtgacatagagttgagtgatattggtgacattggtcaatcataatg 28819007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 190
Target Start/End: Original strand, 30117827 - 30117876
Alignment:
Q  141 ttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatg 190  Q
    |||||| | ||||||||||||||||||||||||||||  |||||| ||||    
T  30117827 ttgggtgatatagagttgggtgacattggtgatattgaccaatcacaatg 30117876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 166 - 258
Target Start/End: Original strand, 228383 - 228474
Alignment:
Q  166 ttggtgatattggtcaatcataatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaa 258  Q
    ||||||| |||||||| ||| |||  || ||||| ||||||||| |||| |||| |||||||||||||||| ||| || ||||| | ||||||    
T  228383 ttggtgacattggtca-tcacaatatttgtgtttttctctcttttacaagcattttgacattgtgattgacaaatctcatcaatattacccaa 228474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 2093933 - 2093985
Alignment:
Q  138 cacttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatg 190  Q
    ||||||||| | |||||||||||||| |||||||| |||| ||||||| ||||    
T  2093933 cacttgggtgacatagagttgggtgatattggtgacattgatcaatcacaatg 2093985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 243
Target Start/End: Original strand, 16802505 - 16802553
Alignment:
Q  195 tgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtc 243  Q
    ||||||||||||||| |||| |||||||||||| ||||||  |||||||    
T  16802505 tgtttctctctcttttacaagcattgtgacattctgattggtcaatgtc 16802553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 16971286 - 16971234
Alignment:
Q  138 cacttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatg 190  Q
    ||||||||| | ||||||||||||||||||||||| ||||  |||||| ||||    
T  16971286 cacttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatg 16971234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 29699509 - 29699457
Alignment:
Q  138 cacttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatg 190  Q
    ||||||||| | |||||||||||||| |||||||| ||||| |||||| ||||    
T  29699509 cacttgggtgacatagagttgggtgatattggtgacattggccaatcacaatg 29699457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 8e-25; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 139 - 258
Target Start/End: Original strand, 11016866 - 11016993
Alignment:
Q  139 acttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatgc--------ttttgtttctctctctttcacaaacattgtgacattgtg 230  Q
    |||||||| | ||||||||||||||||||||||| ||||| |||||| |||||        || ||||||||||||||||||||||||||||||||||||    
T  11016866 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaaacattgtgacattgtg 11016965  T
Q  231 attgaccaatgtcgtcaatgtcacccaa 258  Q
    ||||  |||||||  |||||||||||||    
T  11016966 attggtcaatgtcaccaatgtcacccaa 11016993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 139 - 258
Target Start/End: Original strand, 4290542 - 4290669
Alignment:
Q  139 acttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatgc--------ttttgtttctctctctttcacaaacattgtgacattgtg 230  Q
    |||||||| | |||||||||||||| ||||||||||||||||||||| |||||        |  ||||||||||||||||||||  ||||||||||||||    
T  4290542 acttgggtgacatagagttgggtgatattggtgatattggtcaatcacaatgccacaatgctcgtgtttctctctctttcacaagaattgtgacattgtg 4290641  T
Q  231 attgaccaatgtcgtcaatgtcacccaa 258  Q
    |||| ||||||||  |||||||||||||    
T  4290642 attggccaatgtcaccaatgtcacccaa 4290669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 139 - 243
Target Start/End: Complemental strand, 34854836 - 34854724
Alignment:
Q  139 acttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatgc--------ttttgtttctctctctttcacaaacattgtgacattgtg 230  Q
    |||||||| | ||||||||||||||||||||||| |||||||||||| |||||        || ||||||| |||||||||||| ||||||| |||||||    
T  34854836 acttgggtgacatagagttgggtgacattggtgacattggtcaatcacaatgccacaatgtttgtgtttctatctctttcacaagcattgtggcattgtg 34854737  T
Q  231 attgaccaatgtc 243  Q
    |||| ||||||||    
T  34854736 attggccaatgtc 34854724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 139 - 255
Target Start/End: Original strand, 38975802 - 38975926
Alignment:
Q  139 acttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatgc--------ttttgtttctctctctttcacaaacattgtgacattgtg 230  Q
    |||||||| | ||||||||||||||||||||| | |||||||||||| |||||        || |||||||||||||||||||| ||||||| |||| |     
T  38975802 acttgggtgacatagagttgggtgacattggtaacattggtcaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattata 38975901  T
Q  231 attgaccaatgtcgtcaatgtcacc 255  Q
    ||||| |||||||  ||||||||||    
T  38975902 attgatcaatgtcaccaatgtcacc 38975926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 139 - 243
Target Start/End: Complemental strand, 41018369 - 41018257
Alignment:
Q  139 acttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatgc--------ttttgtttctctctctttcacaaacattgtgacattgtg 230  Q
    |||||||| | ||||||||||||||||||||||| ||||  |||||| |||||        || |||||||||||||||||||| ||||| |||||||||    
T  41018369 acttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgccacaatgcttatgtttctctctctttcacaagcattgggacattgtg 41018270  T
Q  231 attgaccaatgtc 243  Q
    |||| ||||||||    
T  41018269 attggccaatgtc 41018257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 187 - 258
Target Start/End: Original strand, 42628348 - 42628419
Alignment:
Q  187 aatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaa 258  Q
    ||||||| |||||||||||||||||||| ||||| ||||||||||||| ||||| ||  |||||||||||||    
T  42628348 aatgcttatgtttctctctctttcacaagcattgggacattgtgattggccaatatcaccaatgtcacccaa 42628419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 258
Target Start/End: Complemental strand, 48000769 - 48000708
Alignment:
Q  197 tttctctctctttcacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaa 258  Q
    |||||||||||||||||| ||||||| |||||||||||| |||||||  |||||||||||||    
T  48000769 tttctctctctttcacaagcattgtggcattgtgattgatcaatgtcaccaatgtcacccaa 48000708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 195 - 258
Target Start/End: Original strand, 48000798 - 48000861
Alignment:
Q  195 tgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaa 258  Q
    ||||||||||||||||||| |||||||| |||||||||||  |||||||  |||||||||||||    
T  48000798 tgtttctctctctttcacagacattgtggcattgtgattggtcaatgtcaccaatgtcacccaa 48000861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 195 - 253
Target Start/End: Original strand, 15027603 - 15027661
Alignment:
Q  195 tgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtcgtcaatgtca 253  Q
    |||||||||||||||||||| |||||||||||||||||||  |||||||  ||||||||    
T  15027603 tgtttctctctctttcacaagcattgtgacattgtgattggtcaatgtcaccaatgtca 15027661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 199 - 243
Target Start/End: Original strand, 4649387 - 4649431
Alignment:
Q  199 tctctctctttcacaaacattgtgacattgtgattgaccaatgtc 243  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||    
T  4649387 tctctctctttcacaagcatcgtgacattgtgattgaccaatgtc 4649431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 210 - 258
Target Start/End: Original strand, 34854771 - 34854819
Alignment:
Q  210 cacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaa 258  Q
    ||||||||||||| ||||||||||||||||||||  |||||||||||||    
T  34854771 cacaaacattgtggcattgtgattgaccaatgtcaccaatgtcacccaa 34854819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 42628437 - 42628385
Alignment:
Q  138 cacttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatg 190  Q
    ||||||||| | ||||||||||||||||||||||||||||| |||||| ||||    
T  42628437 cacttgggtgacatagagttgggtgacattggtgatattggccaatcacaatg 42628385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 195 - 242
Target Start/End: Complemental strand, 27028870 - 27028823
Alignment:
Q  195 tgtttctctctctttcacaaacattgtgacattgtgattgaccaatgt 242  Q
    ||||||||||||||||| || ||||||||||||||||||| |||||||    
T  27028870 tgtttctctctctttcagaagcattgtgacattgtgattgtccaatgt 27028823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 139 - 215
Target Start/End: Complemental strand, 45231991 - 45231907
Alignment:
Q  139 acttgggtaaaatagagttgggtgacattggtgatattggtcaatc--------ataatgcttttgtttctctctctttcacaaa 215  Q
    |||||||| | ||||||||||||||||||||||| ||||| |||||        | |||||||||||||||||||||||||||||    
T  45231991 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgttacaatgcttttgtttctctctctttcacaaa 45231907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 27028869 - 27028919
Alignment:
Q  210 cacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaagt 260  Q
    ||||||||||||||||||||||||||||||||||  |||  ||||||||||    
T  27028869 cacaaacattgtgacattgtgattgaccaatgtcaccaacatcacccaagt 27028919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 48000883 - 48000826
Alignment:
Q  134 gtaacacttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatgc 191  Q
    ||||||||||||| | ||||||||||||||||||||||| ||||  |||||| |||||    
T  48000883 gtaacacttgggtcacatagagttgggtgacattggtgacattgaccaatcacaatgc 48000826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 7671988 - 7671940
Alignment:
Q  195 tgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtc 243  Q
    |||||||||||||||||||| ||||||| ||||||||||| | ||||||    
T  7671988 tgtttctctctctttcacaagcattgtggcattgtgattggctaatgtc 7671940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 29053391 - 29053343
Alignment:
Q  195 tgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtc 243  Q
    |||||||||||||||||||| ||||| | ||||||||||| ||||||||    
T  29053391 tgtttctctctctttcacaagcattgaggcattgtgattggccaatgtc 29053343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 190
Target Start/End: Complemental strand, 41946000 - 41945945
Alignment:
Q  135 taacacttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatg 190  Q
    |||||||||||| | ||| ||||| ||||||||||| |||||||||||||| ||||    
T  41946000 taacacttgggtgacataaagttgagtgacattggtaatattggtcaatcacaatg 41945945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 268
Target Start/End: Original strand, 22764776 - 22764834
Alignment:
Q  210 cacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaagtgatatcca 268  Q
    ||||||||||||||||||||||||| ||||| ||  |||||||||  ||||| ||||||    
T  22764776 cacaaacattgtgacattgtgattggccaatatcaccaatgtcacataagtgctatcca 22764834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 38975951 - 38975894
Alignment:
Q  134 gtaacacttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatgc 191  Q
    ||||||||| ||| | |||||||| |||||||||||||| |||| ||||| |||||||    
T  38975951 gtaacacttaggtgacatagagttaggtgacattggtgacattgatcaattataatgc 38975894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 41945924 - 41945961
Alignment:
Q  203 tctctttcacaaacattgtgacattgtgattgaccaat 240  Q
    |||||||||||| |||||| ||||||||||||||||||    
T  41945924 tctctttcacaagcattgtaacattgtgattgaccaat 41945961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 4290687 - 4290635
Alignment:
Q  138 cacttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatg 190  Q
    ||||||||| | ||| ||||||||||||||||||| ||||| |||||| ||||    
T  4290687 cacttgggtgacatacagttgggtgacattggtgacattggccaatcacaatg 4290635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 258
Target Start/End: Complemental strand, 11016931 - 11016883
Alignment:
Q  210 cacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaa 258  Q
    ||||| ||||||| ||||||||||| ||||||||  |||||||||||||    
T  11016931 cacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaa 11016883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 11017011 - 11016959
Alignment:
Q  138 cacttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatg 190  Q
    ||||||||| | ||||||||||||||||||||||| ||||  |||||| ||||    
T  11017011 cacttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatg 11016959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 254
Target Start/End: Complemental strand, 27028790 - 27028746
Alignment:
Q  210 cacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcac 254  Q
    ||||| ||||||||||||||||||| ||||||||  |||||||||    
T  27028790 cacaagcattgtgacattgtgattgtccaatgtcaccaatgtcac 27028746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 258
Target Start/End: Complemental strand, 38975867 - 38975819
Alignment:
Q  210 cacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaa 258  Q
    ||||| ||||||| |||||||||||||||||||   |||||||||||||    
T  38975867 cacaagcattgtggcattgtgattgaccaatgttaccaatgtcacccaa 38975819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 48000691 - 48000743
Alignment:
Q  139 acttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatgc 191  Q
    |||||||| | || |||||||||||||||||||| |||| ||||||| |||||    
T  48000691 acttgggtgacattgagttgggtgacattggtgacattgatcaatcacaatgc 48000743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 135 - 243
Target Start/End: Original strand, 33689169 - 33689285
Alignment:
Q  135 taacacttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatg--------cttttgtttctctctctttcacaaacattgtgacat 226  Q
    ||||||||| || | ||||||||||||||||||| |||||||||||||||| ||||        ||| |||||||||||||||||||| |||||||||||    
T  33689169 taacacttgtgtgacatagagttgggtgacattgatgatattggtcaatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacat 33689268  T
Q  227 tgtgattgaccaatgtc 243  Q
    |||||||| ||||||||    
T  33689269 tgtgattggccaatgtc 33689285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 34060203 - 34060287
Alignment:
Q  152 agagttgggtgacattggtgatattggtcaatcataatgcttttgtttctctctctttcacaaacattgtgacattgtgattgac 236  Q
    |||||||| |||||||||||||||||||||||||||||| || ||||| ||||||||||| ||  ||||||| ||||||||||||    
T  34060203 agagttggatgacattggtgatattggtcaatcataatgtttgtgtttttctctctttcataagtattgtgatattgtgattgac 34060287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 141 - 258
Target Start/End: Complemental strand, 47492186 - 47492061
Alignment:
Q  141 ttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatg--------cttttgtttctctctctttcacaaacattgtgacattgtgat 232  Q
    |||||| | ||||||||||||||||||||| ||||||| |||||| ||||        ||| ||||||||||| |||||||| |||||||||||||||||    
T  47492186 ttgggtgacatagagttgggtgacattggtcatattggccaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtgat 47492087  T
Q  233 tgaccaatgtcgtcaatgtcacccaa 258  Q
    || ||||||||  |||||||||||||    
T  47492086 tggccaatgtcaccaatgtcacccaa 47492061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 139 - 243
Target Start/End: Complemental strand, 51046214 - 51046102
Alignment:
Q  139 acttgggtaaaatagagttgggtgacattggtgatattggtcaatca--------taatgcttttgtttctctctctttcacaaacattgtgacattgtg 230  Q
    |||||||| | |||||||||| |||||||||||| ||||| ||||||        |||||||| ||||||||||||||||||||||||||||||||| ||    
T  51046214 acttgggtgacatagagttggatgacattggtgacattggccaatcacaatgccataatgcttgtgtttctctctctttcacaaacattgtgacattatg 51046115  T
Q  231 attgaccaatgtc 243  Q
    ||||| |||||||    
T  51046114 attgatcaatgtc 51046102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 139 - 254
Target Start/End: Original strand, 41752961 - 41753084
Alignment:
Q  139 acttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatgc--------ttttgtttctctctctttcacaaacattgtgacattgtg 230  Q
    |||||||| | ||||||||||||||||||||||| ||||| |||||| |||||        || ||||||| |||||||||||| ||||||| |||||||    
T  41752961 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttctttctctttcacaagcattgtggcattgtg 41753060  T
Q  231 attgaccaatgtcgtcaatgtcac 254  Q
    |||| ||||||||  |||||||||    
T  41753061 attggccaatgtcaccaatgtcac 41753084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 182 - 240
Target Start/End: Complemental strand, 49418781 - 49418723
Alignment:
Q  182 atcataatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaat 240  Q
    |||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||    
T  49418781 atcataatgcttgtgtttctctctctttcacaaatattatgacattgtgattgaccaat 49418723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 141 - 243
Target Start/End: Complemental strand, 43139848 - 43139738
Alignment:
Q  141 ttgggtaaaatagagttgggtgacattggtgatattggtcaat--------cataatgcttttgtttctctctctttcacaaacattgtgacattgtgat 232  Q
    |||||| | ||||||||||||||||||||||| ||||| ||||        || ||||||| |||||||||||||||||||| |||| ||||||||||||    
T  43139848 ttgggtgacatagagttgggtgacattggtgacattggccaataacaatgccacaatgcttgtgtttctctctctttcacaagcattctgacattgtgat 43139749  T
Q  233 tgaccaatgtc 243  Q
    ||||| |||||    
T  43139748 tgaccgatgtc 43139738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 150 - 240
Target Start/End: Original strand, 55223240 - 55223338
Alignment:
Q  150 atagagttgggtgacattggtgatattggtcaatcataatg--------cttttgtttctctctctttcacaaacattgtgacattgtgattgaccaat 240  Q
    |||||||| ||||||||||||||||||||||||||| |||         ||| |||||||||||||||||||| |||||||||||| ||||||||||||    
T  55223240 atagagttaggtgacattggtgatattggtcaatcacaatattagaatacttatgtttctctctctttcacaagcattgtgacattatgattgaccaat 55223338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 30476559 - 30476503
Alignment:
Q  187 aatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtc 243  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  30476559 aatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatgtc 30476503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 138 - 255
Target Start/End: Complemental strand, 30734544 - 30734419
Alignment:
Q  138 cacttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatg--------cttttgtttctctctctttcacaaacattgtgacattgt 229  Q
    ||||||||| | |||||||| |||||||||||||| ||||| |||||| ||||        ||| ||||||||| |||||||||| ||||||||||||||    
T  30734544 cacttgggtgacatagagttaggtgacattggtgacattggccaatcacaatgtcataatacttgtgtttctctatctttcacaagcattgtgacattgt 30734445  T
Q  230 gattgaccaatgtcgtcaatgtcacc 255  Q
    ||| |  ||||||| |||||||||||    
T  30734444 gatcggtcaatgtcatcaatgtcacc 30734419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 195 - 258
Target Start/End: Complemental strand, 1801523 - 1801460
Alignment:
Q  195 tgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaa 258  Q
    |||||||||||||||||||| ||||||| ||||||||||| ||||||||  |||||||||||||    
T  1801523 tgtttctctctctttcacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaa 1801460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 29031791 - 29031746
Alignment:
Q  195 tgtttctctctctttcacaaacattgtgacattgtgattgaccaat 240  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  29031791 tgtttctctctctttcacaagcattgtgacattgtgattgaccaat 29031746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 138 - 243
Target Start/End: Original strand, 18321647 - 18321760
Alignment:
Q  138 cacttgggtaaaatagagttgggtgacattggtgatattggtcaatcataat--------gcttttgtttctctctctttcacaaacattgtgacattgt 229  Q
    |||||||| || |||||||||||||| |||||||| |||||||||||| |||        | || ||||| ||||| |||||||  ||||||||||||||    
T  18321647 cacttgggcaacatagagttgggtgatattggtgacattggtcaatcacaatgtcacaaagtttgtgtttttctctttttcacatgcattgtgacattgt 18321746  T
Q  230 gattgaccaatgtc 243  Q
    ||||||||||||||    
T  18321747 gattgaccaatgtc 18321760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 50550028 - 50550084
Alignment:
Q  187 aatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtc 243  Q
    ||||||| ||||||||||||||||||||||||| ||||||| ||||||| |||||||    
T  50550028 aatgcttgtgtttctctctctttcacaaacattatgacattatgattgatcaatgtc 50550084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 187 - 261
Target Start/End: Original strand, 30904297 - 30904371
Alignment:
Q  187 aatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaagtg 261  Q
    ||||||| ||||||||||||||| | ||| ||||||| |||||||||||  |||||| || ||||||||||||||    
T  30904297 aatgcttgtgtttctctctcttttataaatattgtgatattgtgattgattaatgtcatcgatgtcacccaagtg 30904371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 1801438 - 1801495
Alignment:
Q  134 gtaacacttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatgc 191  Q
    ||||||||||||| | ||||||||||||||||||||||| ||||| |||||| |||||    
T  1801438 gtaacacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgc 1801495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 201 - 258
Target Start/End: Complemental strand, 45103180 - 45103123
Alignment:
Q  201 tctctctttcacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaa 258  Q
    |||||||||||||| |||||||||||||||||||| |||| ||  |||||||||||||    
T  45103180 tctctctttcacaagcattgtgacattgtgattgatcaatatcaccaatgtcacccaa 45103123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 210 - 258
Target Start/End: Complemental strand, 33689238 - 33689190
Alignment:
Q  210 cacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaa 258  Q
    ||||| ||||||||||||||||||||||||| || ||||||||||||||    
T  33689238 cacaagcattgtgacattgtgattgaccaatatcatcaatgtcacccaa 33689190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 45103105 - 45103157
Alignment:
Q  138 cacttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatg 190  Q
    ||||||||| | |||||||||||||||||||||||||||| ||||||| ||||    
T  45103105 cacttgggtgacatagagttgggtgacattggtgatattgatcaatcacaatg 45103157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 150 - 258
Target Start/End: Complemental strand, 30580886 - 30580770
Alignment:
Q  150 atagagttgggtgacattggtgatattggtcaatcataatg--------cttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatg 241  Q
    ||||| |||||||||||| |||| |||||||||||| ||||        ||| ||||||| ||||||||||||| ||||||||||| ||||||  ||||     
T  30580886 atagaattgggtgacatttgtgacattggtcaatcacaatgtcacagtgcttgtgtttctatctctttcacaaatattgtgacattatgattggtcaata 30580787  T
Q  242 tcgtcaatgtcacccaa 258  Q
    ||  |||||||||||||    
T  30580786 tcaccaatgtcacccaa 30580770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 190
Target Start/End: Complemental strand, 50524847 - 50524792
Alignment:
Q  135 taacacttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatg 190  Q
    |||||||||||| | ||||||||| ||||||||||||||||| |||||||| ||||    
T  50524847 taacacttgggtgacatagagttgagtgacattggtgatattagtcaatcacaatg 50524792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 41753110 - 41753053
Alignment:
Q  134 gtaacacttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatgc 191  Q
    ||||||||||||| | ||||||||| ||||||||||||| ||||| |||||| |||||    
T  41753110 gtaacacttgggtgacatagagttgagtgacattggtgacattggccaatcacaatgc 41753053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 195 - 232
Target Start/End: Complemental strand, 47677332 - 47677295
Alignment:
Q  195 tgtttctctctctttcacaaacattgtgacattgtgat 232  Q
    |||||||||||||||||||| |||||||||||||||||    
T  47677332 tgtttctctctctttcacaagcattgtgacattgtgat 47677295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 210 - 258
Target Start/End: Complemental strand, 18321713 - 18321665
Alignment:
Q  210 cacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaa 258  Q
    ||||||| ||||||||||||||||||||||||||  |||| ||||||||    
T  18321713 cacaaactttgtgacattgtgattgaccaatgtcaccaatatcacccaa 18321665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 210 - 258
Target Start/End: Complemental strand, 41753026 - 41752978
Alignment:
Q  210 cacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaa 258  Q
    ||||||||||||| ||||||||||| ||||||||  |||||||||||||    
T  41753026 cacaaacattgtggcattgtgattggccaatgtcaccaatgtcacccaa 41752978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 190
Target Start/End: Original strand, 30580749 - 30580804
Alignment:
Q  135 taacacttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatg 190  Q
    ||||||||| || | ||||| ||||||||||||||||||||||  |||||||||||    
T  30580749 taacacttgagtgacatagaattgggtgacattggtgatattgaccaatcataatg 30580804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 254
Target Start/End: Original strand, 50524763 - 50524822
Alignment:
Q  195 tgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcac 254  Q
    |||||||||||||||||||| ||| || |||||||||||||| ||| ||  |||||||||    
T  50524763 tgtttctctctctttcacaagcatcgtaacattgtgattgactaatatcaccaatgtcac 50524822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 243
Target Start/End: Complemental strand, 21024165 - 21024123
Alignment:
Q  201 tctctctttcacaaacattgtgacattgtgattgaccaatgtc 243  Q
    ||||||||||||||  |||||||||||||| ||||||||||||    
T  21024165 tctctctttcacaagaattgtgacattgtgtttgaccaatgtc 21024123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 243
Target Start/End: Original strand, 30476550 - 30476583
Alignment:
Q  210 cacaaacattgtgacattgtgattgaccaatgtc 243  Q
    ||||| ||||||||||||||||||||||||||||    
T  30476550 cacaagcattgtgacattgtgattgaccaatgtc 30476583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 243
Target Start/End: Original strand, 47677331 - 47677364
Alignment:
Q  210 cacaaacattgtgacattgtgattgaccaatgtc 243  Q
    |||||||||||||||||||||||||| |||||||    
T  47677331 cacaaacattgtgacattgtgattgatcaatgtc 47677364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 258
Target Start/End: Original strand, 30580832 - 30580880
Alignment:
Q  210 cacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaa 258  Q
    ||||| || |||||||||||||||||||||||||   ||||||||||||    
T  30580832 cacaagcactgtgacattgtgattgaccaatgtcacaaatgtcacccaa 30580880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 168 - 258
Target Start/End: Complemental strand, 19226 - 19136
Alignment:
Q  168 ggtgatattggtcaatcataatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaa 258  Q
    |||||||||| |||||||||||| || ||||||||| |||| ||||| |||||||||||||||||||| |||| || ||||||||||||||    
T  19226 ggtgatattgatcaatcataatgtttgtgtttctctttcttccacaagcattgtgacattgtgattgatcaatatcatcaatgtcacccaa 19136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 150 - 190
Target Start/End: Original strand, 19130 - 19170
Alignment:
Q  150 atagagttgggtgacattggtgatattggtcaatcataatg 190  Q
    ||||||||||||||||||| |||||||| ||||||| ||||    
T  19130 atagagttgggtgacattgatgatattgatcaatcacaatg 19170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 139 - 258
Target Start/End: Original strand, 10086754 - 10086881
Alignment:
Q  139 acttgggtaaaatagagttgggtgacattggtgatattggtcaatca--------taatgcttttgtttctctctctttcacaaacattgtgacattgtg 230  Q
    |||||||| | ||||| |||||||||||| |||| ||||||||||||        ||||| || ||||||||||||||||||||||||||||||||||||    
T  10086754 acttgggtgacatagaattgggtgacattagtgacattggtcaatcacaatgtcataatgtttgtgtttctctctctttcacaaacattgtgacattgtg 10086853  T
Q  231 attgaccaatgtcgtcaatgtcacccaa 258  Q
    ||||  |||||||  |||||||||||||    
T  10086854 attggtcaatgtcaccaatgtcacccaa 10086881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 139 - 258
Target Start/End: Complemental strand, 35441110 - 35440983
Alignment:
Q  139 acttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatgc--------ttttgtttctctctctttcacaaacattgtgacattgtg 230  Q
    |||||||| | ||||||||||||||||||||||| ||||| |||||| |||||        || |||||||||||||||||||| |||||||||||||||    
T  35441110 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtg 35441011  T
Q  231 attgaccaatgtcgtcaatgtcacccaa 258  Q
    ||||  |||||||  |||||||||||||    
T  35441010 attggtcaatgtcaccaatgtcacccaa 35440983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 139 - 258
Target Start/End: Original strand, 5033158 - 5033285
Alignment:
Q  139 acttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatgc--------ttttgtttctctctctttcacaaacattgtgacattgtg 230  Q
    |||||||| | ||||||||||||||||||||||| ||||  |||||| |||||        || |||||||||||||||||||| |||||||||||||||    
T  5033158 acttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtg 5033257  T
Q  231 attgaccaatgtcgtcaatgtcacccaa 258  Q
    ||||  |||||||  |||||||||||||    
T  5033258 attggtcaatgtcaccaatgtcacccaa 5033285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 139 - 243
Target Start/End: Complemental strand, 8243529 - 8243417
Alignment:
Q  139 acttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatgc--------ttttgtttctctctctttcacaaacattgtgacattgtg 230  Q
    |||||||| | |||||||||||||||||||||||  ||||||||||| |||||        || |||||||||||||||||||| ||||||| |||||||    
T  8243529 acttgggtgacatagagttgggtgacattggtgacgttggtcaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtg 8243430  T
Q  231 attgaccaatgtc 243  Q
    ||||| |||||||    
T  8243429 attgatcaatgtc 8243417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 139 - 258
Target Start/End: Complemental strand, 33841732 - 33841605
Alignment:
Q  139 acttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatgc--------ttttgtttctctctctttcacaaacattgtgacattgtg 230  Q
    |||||||| | ||||||||||||||||||||||| ||||  |||||| |||||        || |||||||||||||||||||| |||||||||| ||||    
T  33841732 acttgggtgacatagagttgggtgacattggtgacattgaccaatcagaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacaatgtg 33841633  T
Q  231 attgaccaatgtcgtcaatgtcacccaa 258  Q
    ||||  |||||||  |||||||||||||    
T  33841632 attggtcaatgtcaccaatgtcacccaa 33841605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 34229694 - 34229750
Alignment:
Q  187 aatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtc 243  Q
    ||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||    
T  34229694 aatgcttgtgtttctctctctttcacaagcattgtgatattgtgattgaccaatgtc 34229750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 138 - 253
Target Start/End: Original strand, 5667093 - 5667216
Alignment:
Q  138 cacttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatg--------cttttgtttctctctctttcacaaacattgtgacattgt 229  Q
    ||||||||| | |||||||||| |||||||||||| |||||||||||| ||||        ||| | |||||||||||||||||| |||| |||||||||    
T  5667093 cacttgggtgacatagagttggatgacattggtgacattggtcaatcacaatgtcacaatgcttgtatttctctctctttcacaagcattatgacattgt 5667192  T
Q  230 gattgaccaatgtcgtcaatgtca 253  Q
     |||| ||||||||  ||||||||    
T  5667193 aattggccaatgtcaccaatgtca 5667216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 243
Target Start/End: Original strand, 8796415 - 8796531
Alignment:
Q  135 taacacttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatg--------cttttgtttctctctctttcacaaacattgtgacat 226  Q
    |||||||||||| | |||||||| ||||| ||| ||||||||||||||||| ||||        ||| ||||||||| |||||||||| |||||||||||    
T  8796415 taacacttgggtgacatagagttaggtgatatttgtgatattggtcaatcacaatgtcacaatgcttgtgtttctctatctttcacaagcattgtgacat 8796514  T
Q  227 tgtgattgaccaatgtc 243  Q
    | ||||||  |||||||    
T  8796515 tttgattggtcaatgtc 8796531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 243
Target Start/End: Original strand, 31159885 - 31159960
Alignment:
Q  168 ggtgatattggtcaatcataatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtc 243  Q
    ||||| |||| ||||||| |||  ||||||||||||||||||||||| |||||||||||| |||||| | ||||||    
T  31159885 ggtgacattgatcaatcacaatatttttgtttctctctctttcacaagcattgtgacattatgattggcgaatgtc 31159960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 243
Target Start/End: Original strand, 6296654 - 6296714
Alignment:
Q  183 tcataatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtc 243  Q
    ||||||||||| ||||||||||||||||||||  ||||||||||| | |||||| ||||||    
T  6296654 tcataatgcttgtgtttctctctctttcacaagtattgtgacattataattgactaatgtc 6296714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 34541888 - 34541832
Alignment:
Q  187 aatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtc 243  Q
    ||||||| |||||||||||||||||||| |||||||| ||| |||||| ||||||||    
T  34541888 aatgcttgtgtttctctctctttcacaagcattgtgatattatgattggccaatgtc 34541832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 243
Target Start/End: Complemental strand, 35031689 - 35031643
Alignment:
Q  197 tttctctctctttcacaaacattgtgacattgtgattgaccaatgtc 243  Q
    |||||||||||||||||| ||||| |||||||||||||| |||||||    
T  35031689 tttctctctctttcacaagcattgcgacattgtgattgatcaatgtc 35031643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 210 - 258
Target Start/End: Complemental strand, 10086819 - 10086771
Alignment:
Q  210 cacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaa 258  Q
    |||||||||| |||||||||||||||||||||||   ||||||||||||    
T  10086819 cacaaacattatgacattgtgattgaccaatgtcactaatgtcacccaa 10086771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 258
Target Start/End: Complemental strand, 5667158 - 5667111
Alignment:
Q  211 acaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaa 258  Q
    |||| ||||||||||||||||||||||||||||  |||||||| ||||    
T  5667158 acaagcattgtgacattgtgattgaccaatgtcaccaatgtcatccaa 5667111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 190
Target Start/End: Complemental strand, 43844608 - 43844559
Alignment:
Q  141 ttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatg 190  Q
    |||||| | |||||||||| ||||||||||||||||| ||||||| ||||    
T  43844608 ttgggtgacatagagttggatgacattggtgatattgatcaatcacaatg 43844559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 258
Target Start/End: Complemental strand, 2581887 - 2581839
Alignment:
Q  210 cacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaa 258  Q
    ||||| ||||||| ||||||||||| ||||||||  |||||||||||||    
T  2581887 cacaagcattgtggcattgtgattggccaatgtcaacaatgtcacccaa 2581839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 254
Target Start/End: Complemental strand, 4958661 - 4958617
Alignment:
Q  210 cacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcac 254  Q
    |||||||||| |||||||||||||| |||||||| ||||| ||||    
T  4958661 cacaaacattatgacattgtgattggccaatgtcatcaatatcac 4958617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 183 - 243
Target Start/End: Original strand, 4958648 - 4958707
Alignment:
Q  183 tcataatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtc 243  Q
    |||||||| || ||||||||||||||||||||  |||||||| |||||||||  |||||||    
T  4958648 tcataatgtttgtgtttctctctctttcacaagtattgtgac-ttgtgattggtcaatgtc 4958707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 5033303 - 5033251
Alignment:
Q  138 cacttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatg 190  Q
    ||||||||| | ||||||||||||||||||||||| ||||  |||||| ||||    
T  5033303 cacttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatg 5033251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 258
Target Start/End: Original strand, 8243464 - 8243512
Alignment:
Q  210 cacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaa 258  Q
    ||||| ||||||| |||||||||||||||| |||  |||||||||||||    
T  8243464 cacaagcattgtggcattgtgattgaccaacgtcaccaatgtcacccaa 8243512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 258
Target Start/End: Original strand, 35441045 - 35441093
Alignment:
Q  210 cacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaa 258  Q
    ||||| ||||||| ||||||||||| ||||||||  |||||||||||||    
T  35441045 cacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaa 35441093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 150 - 190
Target Start/End: Original strand, 43844479 - 43844519
Alignment:
Q  150 atagagttgggtgacattggtgatattggtcaatcataatg 190  Q
    |||||||||||||| |||| |||||||||| ||||||||||    
T  43844479 atagagttgggtgatattgatgatattggttaatcataatg 43844519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 45191204 - 45191156
Alignment:
Q  195 tgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtc 243  Q
    ||||||||||||||||| || ||||||| |||||||||| | |||||||    
T  45191204 tgtttctctctctttcataagcattgtggcattgtgattaatcaatgtc 45191156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 139 - 258
Target Start/End: Original strand, 16514421 - 16514548
Alignment:
Q  139 acttgggtaaaatagagttgggtgacattggtgatattggtcaatca--------taatgcttttgtttctctctctttcacaaacattgtgacattgtg 230  Q
    |||||||| | ||||||||||||||||||||||| ||||| ||||||        |||||||| |||||||||||||||||||| |||||||||||||||    
T  16514421 acttgggtgacatagagttgggtgacattggtgacattggccaatcactatgccataatgcttgtgtttctctctctttcacaagcattgtgacattgtg 16514520  T
Q  231 attgaccaatgtcgtcaatgtcacccaa 258  Q
    ||||  |||||||  |||| ||||||||    
T  16514521 attggtcaatgtcaccaatctcacccaa 16514548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 14229438 - 14229370
Alignment:
Q  187 aatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacc 255  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||    
T  14229438 aatgcttgtgtttctctctctttcacaagcattgtgacattgtgattgaccaatgtcaccaatgtcacc 14229370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 182 - 240
Target Start/End: Original strand, 6721999 - 6722057
Alignment:
Q  182 atcataatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaat 240  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  6721999 atcacaatgcttgtgtttctctctctttcacaaacattgtgacattgtgattggccaat 6722057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 156 - 243
Target Start/End: Original strand, 15011294 - 15011389
Alignment:
Q  156 ttgggtgacattggtgatattggtcaatcataatgc--------ttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtc 243  Q
    ||||||||||||||||||||||| |||||| |||||        || |||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  15011294 ttgggtgacattggtgatattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatgtc 15011389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 195 - 258
Target Start/End: Complemental strand, 6217301 - 6217238
Alignment:
Q  195 tgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaa 258  Q
    |||||||||||||||||||| ||||||| ||||||||||| ||||||||  |||||||||||||    
T  6217301 tgtttctctctctttcacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaa 6217238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 187 - 258
Target Start/End: Original strand, 38933640 - 38933711
Alignment:
Q  187 aatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaa 258  Q
    ||||||| |||||||||||||||||||| |||||||||||| |||||| |||| |||  |||||||||||||    
T  38933640 aatgcttgtgtttctctctctttcacaagcattgtgacattatgattggccaacgtcaccaatgtcacccaa 38933711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 2828637 - 2828693
Alignment:
Q  187 aatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtc 243  Q
    ||||||| ||||||||||||||||| || ||||||||||||||||||| ||||||||    
T  2828637 aatgcttgtgtttctctctctttcagaagcattgtgacattgtgattggccaatgtc 2828693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 2894016 - 2894072
Alignment:
Q  187 aatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtc 243  Q
    ||||||| | |||||||||||||||||| |||||||||| |||||||||||||||||    
T  2894016 aatgcttgtatttctctctctttcacaagcattgtgacactgtgattgaccaatgtc 2894072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 139 - 258
Target Start/End: Complemental strand, 29508832 - 29508704
Alignment:
Q  139 acttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatgc--------ttttgtttctctctctttcacaaacattgtgaca-ttgt 229  Q
    |||||||| | |||||||||||||| |||||||| ||||| |||||| |||||        || |||||||||||||||||||| ||||||| || ||||    
T  29508832 acttgggtgacatagagttgggtgatattggtgacattggccaatcacaatgccgcaatgcttgtgtttctctctctttcacaagcattgtggcatttgt 29508733  T
Q  230 gattgaccaatgtcgtcaatgtcacccaa 258  Q
    |||||  |||||||  |||||||||||||    
T  29508732 gattggtcaatgtcaccaatgtcacccaa 29508704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 150 - 190
Target Start/End: Complemental strand, 33018675 - 33018635
Alignment:
Q  150 atagagttgggtgacattggtgatattggtcaatcataatg 190  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  33018675 atagagttgggtgacattggtgatattggtcaatcacaatg 33018635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 195 - 258
Target Start/End: Complemental strand, 14470669 - 14470606
Alignment:
Q  195 tgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaa 258  Q
    |||||||||||||||||||| |||||  ||||||||||||  |||||||  |||||||||||||    
T  14470669 tgtttctctctctttcacaagcattgcaacattgtgattggtcaatgtcaccaatgtcacccaa 14470606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 184 - 243
Target Start/End: Original strand, 37961756 - 37961815
Alignment:
Q  184 cataatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtc 243  Q
    ||||||| || |||||||||||||||||||| ||||||| |||||||||||  |||||||    
T  37961756 cataatgtttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtc 37961815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 150 - 191
Target Start/End: Complemental strand, 9173111 - 9173070
Alignment:
Q  150 atagagttgggtgacattggtgatattggtcaatcataatgc 191  Q
    ||||||||||||||||||||||||||||| |||||| |||||    
T  9173111 atagagttgggtgacattggtgatattggccaatcacaatgc 9173070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 209 - 258
Target Start/End: Original strand, 33018620 - 33018669
Alignment:
Q  209 tcacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaa 258  Q
    |||||| ||||||||||||||||||||||||| ||  |||||||||||||    
T  33018620 tcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaa 33018669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 182 - 243
Target Start/End: Complemental strand, 37762091 - 37762030
Alignment:
Q  182 atcataatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtc 243  Q
    |||| ||||||| ||||||| |||||||||||| ||||| |||||||||||||  |||||||    
T  37762091 atcacaatgcttgtgtttctttctctttcacaagcattgcgacattgtgattggtcaatgtc 37762030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 38933729 - 38933677
Alignment:
Q  138 cacttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatg 190  Q
    ||||||||| | |||||||||||||||||||||||  |||| |||||||||||    
T  38933729 cacttgggtgacatagagttgggtgacattggtgacgttggccaatcataatg 38933677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 190
Target Start/End: Original strand, 2143899 - 2143938
Alignment:
Q  151 tagagttgggtgacattggtgatattggtcaatcataatg 190  Q
    ||||||| |||||||| |||||||||||||||||||||||    
T  2143899 tagagttaggtgacatcggtgatattggtcaatcataatg 2143938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 191
Target Start/End: Original strand, 6217222 - 6217273
Alignment:
Q  140 cttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatgc 191  Q
    ||||||| | ||||||||||||||||||||||| ||||| |||||| |||||    
T  6217222 cttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgc 6217273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 258
Target Start/End: Complemental strand, 29925647 - 29925584
Alignment:
Q  195 tgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaa 258  Q
    |||||||||||||||||||| |||| |||||||||||  | ||||||||  |||| ||||||||    
T  29925647 tgtttctctctctttcacaagcattctgacattgtgaggggccaatgtcaccaatatcacccaa 29925584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 243
Target Start/End: Complemental strand, 14464622 - 14464584
Alignment:
Q  205 tctttcacaaacattgtgacattgtgattgaccaatgtc 243  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  14464622 tctttcacaagtattgtgacattgtgattgaccaatgtc 14464584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 15011342 - 15011292
Alignment:
Q  210 cacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaagt 260  Q
    ||||||||||||| ||||||||||| ||||| ||  |||||||||||||||    
T  15011342 cacaaacattgtggcattgtgattggccaatatcaccaatgtcacccaagt 15011292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 254
Target Start/End: Original strand, 32545846 - 32545908
Alignment:
Q  192 ttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcac 254  Q
    |||| ||| ||||||||||| || |||||||||||| |||||| ||||||||  |||||||||    
T  32545846 ttttttttatctctctttcataagcattgtgacattatgattggccaatgtcaccaatgtcac 32545908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 183
Target Start/End: Original strand, 1945424 - 1945453
Alignment:
Q  154 agttgggtgacattggtgatattggtcaat 183  Q
    ||||||||||||||||||||||||||||||    
T  1945424 agttgggtgacattggtgatattggtcaat 1945453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 8534207 - 8534252
Alignment:
Q  195 tgtttctctctctttcacaaacattgtgacattgtgattgaccaat 240  Q
    ||||||||||| ||||||||  ||||||||||||| ||||||||||    
T  8534207 tgtttctctctatttcacaagaattgtgacattgtaattgaccaat 8534252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 258
Target Start/End: Original strand, 14892323 - 14892384
Alignment:
Q  197 tttctctctctttcacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaa 258  Q
    ||||||||||||||| ||  ||||| ||||||||||||| |||||||  |||||||| ||||    
T  14892323 tttctctctctttcataagtattgtaacattgtgattgatcaatgtcaccaatgtcatccaa 14892384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 24115981 - 24116026
Alignment:
Q  195 tgtttctctctctttcacaaacattgtgacattgtgattgaccaat 240  Q
    |||||| | ||||||||||| ||||| |||||||||||||||||||    
T  24115981 tgtttcacactctttcacaagcattgcgacattgtgattgaccaat 24116026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 150 - 190
Target Start/End: Original strand, 14229361 - 14229401
Alignment:
Q  150 atagagttgggtgacattggtgatattggtcaatcataatg 190  Q
    |||||||| |||||||||||||| |||||||||||| ||||    
T  14229361 atagagttcggtgacattggtgacattggtcaatcacaatg 14229401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 150 - 190
Target Start/End: Complemental strand, 24116050 - 24116010
Alignment:
Q  150 atagagttgggtgacattggtgatattggtcaatcataatg 190  Q
    ||||||||||||| |||| ||||||||||||||||| ||||    
T  24116050 atagagttgggtgccattagtgatattggtcaatcacaatg 24116010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 32545930 - 32545878
Alignment:
Q  138 cacttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatg 190  Q
    ||||||||| | ||||||||  ||||||||||||| ||||| |||||||||||    
T  32545930 cacttgggtgacatagagtttagtgacattggtgacattggccaatcataatg 32545878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 183 - 243
Target Start/End: Original strand, 47303444 - 47303504
Alignment:
Q  183 tcataatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtc 243  Q
    |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  47303444 tcataatgtttgtgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtc 47303504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 139 - 258
Target Start/End: Complemental strand, 29179738 - 29179611
Alignment:
Q  139 acttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatgc--------ttttgtttctctctctttcacaaacattgtgacattgtg 230  Q
    |||||||| | ||||||||||||||||||||||| ||||| |||||| |||||        || |||||||||||||||||||| |||||||||||||||    
T  29179738 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtg 29179639  T
Q  231 attgaccaatgtcgtcaatgtcacccaa 258  Q
    ||||  || ||||  |||||||||||||    
T  29179638 attggtcagtgtcaccaatgtcacccaa 29179611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 139 - 258
Target Start/End: Complemental strand, 48994058 - 48993931
Alignment:
Q  139 acttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatgc--------ttttgtttctctctctttcacaaacattgtgacattgtg 230  Q
    |||||||| | ||||||||||||||||||||||| ||||  |||||| |||||        || |||||||||||||||||||| |||||||||||||||    
T  48994058 acttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtg 48993959  T
Q  231 attgaccaatgtcgtcaatgtcacccaa 258  Q
    ||||  |||||||  |||||||||||||    
T  48993958 attggtcaatgtcaccaatgtcacccaa 48993931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 8337928 - 8337880
Alignment:
Q  195 tgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtc 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8337928 tgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtc 8337880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 187 - 258
Target Start/End: Complemental strand, 32540833 - 32540762
Alignment:
Q  187 aatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaa 258  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||| |||||| |  |||||||||||||    
T  32540833 aatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatgccaccaatgtcacccaa 32540762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 182 - 244
Target Start/End: Original strand, 45728335 - 45728397
Alignment:
Q  182 atcataatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtcg 244  Q
    |||| ||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  45728335 atcacaatgcttgtgtttctctctctttcacaagcattatgacattgtgattgaccaatgtcg 45728397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 195 - 243
Target Start/End: Original strand, 4609057 - 4609105
Alignment:
Q  195 tgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtc 243  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4609057 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatgtc 4609105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 34062262 - 34062318
Alignment:
Q  187 aatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtc 243  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||    
T  34062262 aatgcttatgtttctctctctttcacaaacattgtgacattgtgattggtcaatgtc 34062318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 48605032 - 48604976
Alignment:
Q  187 aatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtc 243  Q
    |||||||  |||||||||||||||||||| |||||||||||||||||||||||||||    
T  48605032 aatgcttgcgtttctctctctttcacaaatattgtgacattgtgattgaccaatgtc 48604976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 188 - 243
Target Start/End: Complemental strand, 1819573 - 1819518
Alignment:
Q  188 atgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtc 243  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||| |||||||    
T  1819573 atgcttgtgtttctctctctttcacaagcattgtgacattgtgattgatcaatgtc 1819518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 187 - 258
Target Start/End: Original strand, 15220864 - 15220935
Alignment:
Q  187 aatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaa 258  Q
    ||||||| |||||||||||||||||||| |||||||| |||||||||| ||||| ||  |||||||||||||    
T  15220864 aatgcttgtgtttctctctctttcacaagcattgtgagattgtgattggccaatatcaccaatgtcacccaa 15220935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 139 - 243
Target Start/End: Original strand, 37155043 - 37155155
Alignment:
Q  139 acttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatg--------cttttgtttctctctctttcacaaacattgtgacattgtg 230  Q
    |||||||| | |||||||| |||||||||||||| ||||| |||||| ||||        ||| ||||||||||||||||||||  ||||||||||||||    
T  37155043 acttgggtgacatagagtttggtgacattggtgacattggccaatcacaatgtcacaatgcttgtgtttctctctctttcacaagtattgtgacattgtg 37155142  T
Q  231 attgaccaatgtc 243  Q
    |||| ||||||||    
T  37155143 attggccaatgtc 37155155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 166 - 243
Target Start/End: Complemental strand, 28928885 - 28928808
Alignment:
Q  166 ttggtgatattggtcaatcataatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtc 243  Q
    ||||||| ||||| |||||| | || || |||||||||||||||||||| || |||||||||||||||| ||||||||    
T  28928885 ttggtgacattggccaatcacagtgtttgtgtttctctctctttcacaagcactgtgacattgtgattggccaatgtc 28928808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 741587 - 741531
Alignment:
Q  187 aatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtc 243  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||  |||||||    
T  741587 aatgcttgtgtttctctctctttcacaagcattgtgacattgtgattgggcaatgtc 741531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 17127649 - 17127593
Alignment:
Q  187 aatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtc 243  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||  |||||||    
T  17127649 aatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggtcaatgtc 17127593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 46334031 - 46333975
Alignment:
Q  187 aatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtc 243  Q
    ||||||| ||||| |||||||||||||| ||||||||||||||||||| ||||||||    
T  46334031 aatgcttgtgtttttctctctttcacaagcattgtgacattgtgattggccaatgtc 46333975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 187 - 258
Target Start/End: Original strand, 5995422 - 5995493
Alignment:
Q  187 aatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaa 258  Q
    ||||||| |||||||||||||||||||| ||||||| |||||||||||  |||||||  |||||||| ||||    
T  5995422 aatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtcaccaatgtcatccaa 5995493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 187 - 258
Target Start/End: Original strand, 33219626 - 33219697
Alignment:
Q  187 aatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaa 258  Q
    ||||||| ||||| |||||||||||||| |||| ||||||||||||||| |||||||  |||||||| ||||    
T  33219626 aatgcttgtgtttttctctctttcacaagcattatgacattgtgattgatcaatgtcaccaatgtcatccaa 33219697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 139 - 243
Target Start/End: Original strand, 48498412 - 48498524
Alignment:
Q  139 acttgggtaaaatagagttgggtgacattggtgatattggtcaatcat--------aatgcttttgtttctctctctttcacaaacattgtgacattgtg 230  Q
    |||||||| | |||||||||||||||||| |||| |||||||||||||        |||| || |||||||||||||||||||| ||| || ||||||||    
T  48498412 acttgggtgacatagagttgggtgacatttgtgacattggtcaatcataataccacaatgtttgtgtttctctctctttcacaagcatggtaacattgtg 48498511  T
Q  231 attgaccaatgtc 243  Q
    ||||  |||||||    
T  48498512 attggtcaatgtc 48498524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 141 - 243
Target Start/End: Complemental strand, 44706923 - 44706812
Alignment:
Q  141 ttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatgc--------ttttgtttctctctctttcacaaacattgtgaca-ttgtga 231  Q
    |||||| | ||||||||||||||||||||||| ||||| |||||| |||||        || |||||||||||||||||||| ||||||| || ||||||    
T  44706923 ttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccgcaatgcttgtgtttctctctctttcacaagcattgtggcatttgtga 44706824  T
Q  232 ttgaccaatgtc 243  Q
    ||| ||||||||    
T  44706823 ttggccaatgtc 44706812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 9157363 - 9157419
Alignment:
Q  187 aatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtc 243  Q
    ||||||| |||||||||||||||| ||| |||||||| ||||||||||| |||||||    
T  9157363 aatgcttgtgtttctctctctttctcaagcattgtgatattgtgattgatcaatgtc 9157419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 195 - 255
Target Start/End: Original strand, 29371429 - 29371489
Alignment:
Q  195 tgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacc 255  Q
    |||||||||||||||||||| |||||||||||||||||||  |||| ||  ||||||||||    
T  29371429 tgtttctctctctttcacaagcattgtgacattgtgattggtcaatatcaccaatgtcacc 29371489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 195 - 234
Target Start/End: Complemental strand, 1091621 - 1091582
Alignment:
Q  195 tgtttctctctctttcacaaacattgtgacattgtgattg 234  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  1091621 tgtttctctctctttcacaagcattgtgacattgtgattg 1091582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 185
Target Start/End: Complemental strand, 15220950 - 15220906
Alignment:
Q  141 ttgggtaaaatagagttgggtgacattggtgatattggtcaatca 185  Q
    |||||| | ||||||||||||||||||||||||||||| ||||||    
T  15220950 ttgggtgacatagagttgggtgacattggtgatattggccaatca 15220906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 33219715 - 33219663
Alignment:
Q  138 cacttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatg 190  Q
    ||||||||||| |||||||||| |||||||||||| |||| ||||||| ||||    
T  33219715 cacttgggtaacatagagttggatgacattggtgacattgatcaatcacaatg 33219663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 46931994 - 46932046
Alignment:
Q  139 acttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatgc 191  Q
    |||||||| | ||||||||||||||||||||||| ||||| |||||| |||||    
T  46931994 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgc 46932046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 210 - 258
Target Start/End: Complemental strand, 46932059 - 46932011
Alignment:
Q  210 cacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaa 258  Q
    ||||||||||||| ||||||||||| ||||||||  |||||||||||||    
T  46932059 cacaaacattgtggcattgtgattggccaatgtcaccaatgtcacccaa 46932011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 187 - 258
Target Start/End: Complemental strand, 49444996 - 49444927
Alignment:
Q  187 aatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaa 258  Q
    ||||||| |||||||||||||  ||||| |||||| ||||||||||||| | |||||  |||||||||||||    
T  49444996 aatgcttgtgtttctctctct--cacaagcattgtaacattgtgattgatcgatgtcaccaatgtcacccaa 49444927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 240
Target Start/End: Complemental strand, 38674576 - 38674537
Alignment:
Q  201 tctctctttcacaaacattgtgacattgtgattgaccaat 240  Q
    |||||||||||||| ||||||||||||||||||| |||||    
T  38674576 tctctctttcacaagcattgtgacattgtgattggccaat 38674537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 5995515 - 5995458
Alignment:
Q  134 gtaacacttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatgc 191  Q
    ||||||||||||| | |||||||||| |||||||||||| ||||  |||||| |||||    
T  5995515 gtaacacttgggtgacatagagttggatgacattggtgacattgaccaatcacaatgc 5995458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 243
Target Start/End: Complemental strand, 29371430 - 29371397
Alignment:
Q  210 cacaaacattgtgacattgtgattgaccaatgtc 243  Q
    ||||||||||||||||||||||||| ||||||||    
T  29371430 cacaaacattgtgacattgtgattggccaatgtc 29371397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 255
Target Start/End: Complemental strand, 37155108 - 37155063
Alignment:
Q  210 cacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacc 255  Q
    ||||| ||||||||||||||||||| ||||||||  ||||||||||    
T  37155108 cacaagcattgtgacattgtgattggccaatgtcaccaatgtcacc 37155063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 5694966 - 5694919
Alignment:
Q  195 tgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtc 243  Q
    |||||||||||||||||||| |||| | | |||||||||||||||||||    
T  5694966 tgtttctctctctttcacaagcatt-taatattgtgattgaccaatgtc 5694919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 258
Target Start/End: Complemental strand, 21630104 - 21630056
Alignment:
Q  210 cacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaa 258  Q
    ||||| |||||||||||||||||||  |||||||  |||||||||||||    
T  21630104 cacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaa 21630056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 258
Target Start/End: Original strand, 29179673 - 29179721
Alignment:
Q  210 cacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaa 258  Q
    ||||| ||||||| ||||||||||| ||||||||  |||||||||||||    
T  29179673 cacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaa 29179721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 48993913 - 48993965
Alignment:
Q  138 cacttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatg 190  Q
    ||||||||| | ||||||||||||||||||||||| ||||  |||||| ||||    
T  48993913 cacttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatg 48993965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 49444909 - 49444961
Alignment:
Q  138 cacttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatg 190  Q
    ||||||||| | ||||||||||||||||||||||| || | ||||||| ||||    
T  49444909 cacttgggtgacatagagttgggtgacattggtgacatcgatcaatcacaatg 49444961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 8e-19; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 551250 - 551194
Alignment:
Q  187 aatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtc 243  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  551250 aatgcttgtgtttctctctctttcacaaacattgtggcattgtgattgaccaatgtc 551194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 2315392 - 2315333
Alignment:
Q  184 cataatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtc 243  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||    
T  2315392 cataatgcttatgtttcgctctctttcacaaacattgtgacattgtgattgatcaatgtc 2315333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 187 - 258
Target Start/End: Original strand, 12343153 - 12343224
Alignment:
Q  187 aatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaa 258  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||  |||| ||||||||    
T  12343153 aatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatgtcaccaatctcacccaa 12343224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 183 - 243
Target Start/End: Complemental strand, 10521938 - 10521878
Alignment:
Q  183 tcataatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtc 243  Q
    ||||||||||| ||||||||||||||||| || ||||||||||||||||||| ||||||||    
T  10521938 tcataatgcttgtgtttctctctctttcataagcattgtgacattgtgattggccaatgtc 10521878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 187 - 258
Target Start/End: Complemental strand, 24618686 - 24618615
Alignment:
Q  187 aatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaa 258  Q
    ||||||| ||||||||||||||||| || |||| ||||||||||||||| |||||||  |||||||||||||    
T  24618686 aatgcttgtgtttctctctctttcataagcattatgacattgtgattgatcaatgtcaccaatgtcacccaa 24618615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 17750969 - 17751026
Alignment:
Q  201 tctctctttcacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaa 258  Q
    |||||||||||||| ||||||||||||||||| | |||||||| ||||| ||||||||    
T  17750969 tctctctttcacaagcattgtgacattgtgatcggccaatgtcatcaatatcacccaa 17751026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 13043510 - 13043566
Alignment:
Q  187 aatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtc 243  Q
    ||||||| |||||||||||||||||||| |||||||| |||||||||  ||||||||    
T  13043510 aatgcttgtgtttctctctctttcacaagcattgtgatattgtgattagccaatgtc 13043566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 17750963 - 17750921
Alignment:
Q  211 acaaacattgtgacattgtgattgaccaatgtcgtcaatgtca 253  Q
    |||||||||||||||||||||||||||||||||  ||||||||    
T  17750963 acaaacattgtgacattgtgattgaccaatgtcaccaatgtca 17750921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 150 - 231
Target Start/End: Original strand, 24587469 - 24587558
Alignment:
Q  150 atagagttgggtgacattggtgatattggtcaa--------tcataatgcttttgtttctctctctttcacaaacattgtgacattgtga 231  Q
    |||||||||||||||||| |||| |||||||||        ||| ||||||| |||||||| || |||||||| ||||||||||||||||    
T  24587469 atagagttgggtgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctcgctttttcacaagcattgtgacattgtga 24587558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 210 - 258
Target Start/End: Complemental strand, 24587523 - 24587475
Alignment:
Q  210 cacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaa 258  Q
    ||||| ||||||||||||||||||||||||||||   ||||||||||||    
T  24587523 cacaagcattgtgacattgtgattgaccaatgtcactaatgtcacccaa 24587475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 24975749 - 24975801
Alignment:
Q  139 acttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatgc 191  Q
    |||||||| | |||||||||| |||||||||||| |||||||||||| |||||    
T  24975749 acttgggtgacatagagttggctgacattggtgacattggtcaatcacaatgc 24975801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 258
Target Start/End: Complemental strand, 24975815 - 24975766
Alignment:
Q  209 tcacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaa 258  Q
    |||||| ||||||| ||||||||||||||||||||  |||||||| ||||    
T  24975815 tcacaagcattgtggcattgtgattgaccaatgtcaccaatgtcagccaa 24975766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 150 - 190
Target Start/End: Original strand, 24618609 - 24618649
Alignment:
Q  150 atagagttgggtgacattggtgatattggtcaatcataatg 190  Q
    ||||||||||||||||||||||| |||| ||||||| ||||    
T  24618609 atagagttgggtgacattggtgacattgatcaatcacaatg 24618649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 187 - 258
Target Start/End: Complemental strand, 49788 - 49717
Alignment:
Q  187 aatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaa 258  Q
    ||||||| ||||||||| |||||||||| |||||||||||||||||||  ||||||| ||||||||||||||    
T  49788 aatgcttgtgtttctctttctttcacaagcattgtgacattgtgattggtcaatgtcatcaatgtcacccaa 49717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 3006 - 2925
Alignment:
Q  150 atagagttgggtgacattggtgatattggtcaatcataatgcttttgtttctctctctttcacaaacattgtgacattgtgattg 234  Q
    ||||||||||||||||| ||||| ||||| |||    |||| || ||||||||||||||||||||||||||||||||||||||||    
T  3006 atagagttgggtgacatcggtgacattggccaac---aatgtttgtgtttctctctctttcacaaacattgtgacattgtgattg 2925  T

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Target: scaffold0161 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 139 - 258
Target Start/End: Complemental strand, 27361 - 27234
Alignment:
Q  139 acttgggtaaaatagagttgggtgacattggtgatattggtcaat--------cataatgcttttgtttctctctctttcacaaacattgtgacattgtg 230  Q
    |||||||| | ||||||||||||||||||||||||||||| ||||        || ||||||| ||||||||||||||||||||  ||| ||||||||||    
T  27361 acttgggtgatatagagttgggtgacattggtgatattggccaatcacaatgccacaatgcttctgtttctctctctttcacaagaattatgacattgtg 27262  T
Q  231 attgaccaatgtcgtcaatgtcacccaa 258  Q
    |||| ||||| ||   ||||||||||||    
T  27261 attggccaatatcactaatgtcacccaa 27234  T

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Target: scaffold0161; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 190
Target Start/End: Original strand, 27217 - 27268
Alignment:
Q  139 acttgggtaaaatagagttgggtgacattggtgatattggtcaatcataatg 190  Q
    |||||||| | |||||||||||||||||| |||||||||| |||||| ||||    
T  27217 acttgggtgacatagagttgggtgacattagtgatattggccaatcacaatg 27268  T

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Target: scaffold1033 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold1033
Description:

Target: scaffold1033; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 187 - 244
Target Start/End: Original strand, 2266 - 2323
Alignment:
Q  187 aatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtcg 244  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  2266 aatgcttgtgtttctctctctttcacaagcattgtgacattgtgattgatcaatgtcg 2323  T

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Target: scaffold1029 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold1029
Description:

Target: scaffold1029; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 187 - 244
Target Start/End: Original strand, 2266 - 2323
Alignment:
Q  187 aatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtcg 244  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  2266 aatgcttgtgtttctctctctttcacaagcattgtgacattgtgattgatcaatgtcg 2323  T

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Target: scaffold0586 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 187 - 258
Target Start/End: Complemental strand, 7132 - 7061
Alignment:
Q  187 aatgcttttgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacccaa 258  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||| | ||| ||  |||||||||||||    
T  7132 aatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggctaatatcaccaatgtcacccaa 7061  T

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Target: scaffold0586; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 255
Target Start/End: Original strand, 7123 - 7168
Alignment:
Q  210 cacaaacattgtgacattgtgattgaccaatgtcgtcaatgtcacc 255  Q
    ||||| ||||||||||||||||||| ||||||||  ||||||||||    
T  7123 cacaagcattgtgacattgtgattggccaatgtcaccaatgtcacc 7168  T

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Target: scaffold0586; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 150 - 190
Target Start/End: Original strand, 7055 - 7095
Alignment:
Q  150 atagagttgggtgacattggtgatattggtcaatcataatg 190  Q
    ||||||||||||||||||||||||||| | |||||| ||||    
T  7055 atagagttgggtgacattggtgatattagccaatcacaatg 7095  T

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Target: scaffold0047 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 195 - 243
Target Start/End: Original strand, 63818 - 63866
Alignment:
Q  195 tgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtc 243  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  63818 tgtttctctctctttcacaagcattgtgacattgtgattggccaatgtc 63866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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