View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20382_low_15 (Length: 446)
Name: NF20382_low_15
Description: NF20382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20382_low_15 |
 | |
|
| [»] scaffold0633 (1 HSPs) |
| | |
|
| [»] scaffold0606 (1 HSPs) |
| | |
|
| [»] scaffold0123 (1 HSPs) |
| | |
|
| [»] scaffold0017 (1 HSPs) |
| | |
|
| [»] scaffold0072 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 428
Target Start/End: Original strand, 41667548 - 41667982
Alignment:
| Q |
1 |
caaaggataaattgttggaaaacctaagtttgatttttgagtggaacaaatattgtcctgtctttacttacctcctgatcggacactagattaccatgac |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
41667548 |
caaaggataaattgttggaaaatctaagtttgatttttgagtggaacaaatattgtcctgtctttacttacttcctgattggacactagattaccatgac |
41667647 |
T |
|
| Q |
101 |
ccatttatcatgagaactggaggttaacacaaaaaataaatgagttatatcattgtgatcaattttatttaaaatgtgtcgtggaaatgactgtatcgat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
41667648 |
ccatttatcatgagaactggaggttaacacaaaaaataaatgagttatatcattgtgattaattttatttaaaatgtgttgcggaaatgactgtatcgat |
41667747 |
T |
|
| Q |
201 |
atattttacaaaatatgagataatttaaaataatatgaagtgtaaaattaatgatattagtttccgat---taatctattacatggt-aaaaaaatataa |
296 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||| | ||| |||||||||||||||| |||||||||||| |
|
|
| T |
41667748 |
atattttacgaaatatgagataatttaaaataatatcaagtgtaaaactaatgatattagttgcagattaataatctattacatggtaaaaaaaatataa |
41667847 |
T |
|
| Q |
297 |
ca-ttttttgac----nnnnnnnntaaacatttaaattagattaattgggggaccatataaccaaattatatatactttatgaaacattttaatactagt |
391 |
Q |
| |
|
|| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
41667848 |
catttttttgacaaaaaaaaaaaataaacatttaaattagattaattgggggacc--ataaccaaattatatatactttatgaaacattttaatacaagt |
41667945 |
T |
|
| Q |
392 |
tgcagtgtataaannnnnnnattgaaaatgtgggggg |
428 |
Q |
| |
|
|| |||||||||| ||||||||||||||||| |
|
|
| T |
41667946 |
tgtagtgtataaatttttttattgaaaatgtgggggg |
41667982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 101 - 259
Target Start/End: Original strand, 40556630 - 40556790
Alignment:
| Q |
101 |
ccatttatcatgagaactgga-ggttaacacaaaaaataaatgagttatatcattg-tgatcaattttatttaaaatgtgtcgtggaaatgactgtatcg |
198 |
Q |
| |
|
||||||| ||||||||| || ||||||||||||||||||||||| |||||||||| || | |||||||||||||||||| ||||| | | | | | |
|
|
| T |
40556630 |
ccatttaccatgagaaccagaaggttaacacaaaaaataaatgagatatatcattgttggttcattttatttaaaatgtgttgtggagagaatcatgttg |
40556729 |
T |
|
| Q |
199 |
atatattttacaaaatatgagataatttaaaataatatgaagtgtaaaattaatgatatta |
259 |
Q |
| |
|
||||| ||||| |||||||| ||| |||||| ||||||||| | ||||||||||||||||| |
|
|
| T |
40556730 |
atataatttacgaaatatgatatattttaaattaatatgaaatataaaattaatgatatta |
40556790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 275
Target Start/End: Original strand, 4126174 - 4126236
Alignment:
| Q |
213 |
atatgagataatttaaaataatatgaagtgtaaaattaatgatattagtttccgattaatcta |
275 |
Q |
| |
|
|||||||||||||||||||||||| | | |||||||||||||||||||| | ||||||||| |
|
|
| T |
4126174 |
atatgagataatttaaaataatataacatataaaattaatgatattagttgtcaattaatcta |
4126236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0633 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: scaffold0633
Description:
Target: scaffold0633; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 428
Target Start/End: Complemental strand, 7679 - 7244
Alignment:
| Q |
1 |
caaaggataaattgttggaaaacctaagtttgatttttgagtggaacaaatattgtcctgtctttacttacctcctgatcggacactagattaccatgac |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
7679 |
caaaggataaattgttggaaaatctaagtttgatttttgagtggaacaaatattgtcctgtctttacttacttcctgattggacactagattaccatgac |
7580 |
T |
|
| Q |
101 |
ccatttatcatgagaactggaggttaacacaaaaaataaatgagttatatcattgtgatcaattttatttaaaatgtgtcgtggaaatgactgtatcgat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
7579 |
ccatttatcatgagaactggaggttaacaca-aaaataaatgagttatatcattgtgattaattttatttaaaatgtgttgcggaaatgactgtatcgat |
7481 |
T |
|
| Q |
201 |
atattttacaaaatatgagataatttaaaataatatgaagtgtaaaattaatgatattagtttccgat---taatctattacatggt-aaaaaaatataa |
296 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||| | ||| |||||||||||||||| |||||||||||| |
|
|
| T |
7480 |
atattttacgaaatatgagataatttaaaataatatcaagtgtaaaactaatgatattagttgcagattaataatctattacatggtaaaaaaaatataa |
7381 |
T |
|
| Q |
297 |
catttttt-------gacnnnnnnnntaaacatttaaattagattaattgggggaccatataaccaaattatatatactttatgaaacattttaatacta |
389 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
7380 |
cattttttttgaacaaaaaaaaaaaataaacatttaaattagattaattgggggacc--ataaccaaattatatatactttatgaaacattttaatacaa |
7283 |
T |
|
| Q |
390 |
gttgcagtgtataaannnnnnnattgaaaatgtgggggg |
428 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||| |
|
|
| T |
7282 |
gttgtagtgtataaatttttttattgaaaatgtgggggg |
7244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0606 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: scaffold0606
Description:
Target: scaffold0606; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 78 - 262
Target Start/End: Original strand, 488 - 676
Alignment:
| Q |
78 |
atcggacactagattaccatgacccatttatcatgagaactggagg-ttaacacaaaaaataaatgagttatatcattgtgatcaattttatttaaaat- |
175 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||| | ||||||||||||||| |
|
|
| T |
488 |
atcggacactagattaccatgacccatttttcatgagaactggagggttaacacaaaaaataaatgagatatatcattgtggttaattttatttaaaata |
587 |
T |
|
| Q |
176 |
--gtgtcgtggaaatgactgtatcgatatattttacaaaatatgagataatttaaaataatatgaagtgtaaaattaatgatattagtt |
262 |
Q |
| |
|
|||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
588 |
ttgtgttgtcgaaatggctgtatcgatatattttacaaaatatgagataatttaaaataatatgaagtataaaattaatgatattagtt |
676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 120; Significance: 3e-61; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 31600436 - 31600741
Alignment:
| Q |
1 |
caaaggataaattgtt--ggaaaacctaagtttgatttttgagtggaacaaatattgtcctgtctttacttacctcctgatcggacactagattaccatg |
98 |
Q |
| |
|
||||||||||||| || ||| ||||| ||||||||| |||| |||||||||| || || |||||| |||| |||| ||| |||||||||||||||| |
|
|
| T |
31600436 |
caaaggataaattattcaggagaacctgagtttgattcttgattggaacaaattttatctaatctttatttacttcctaatcaaacactagattaccatg |
31600535 |
T |
|
| Q |
99 |
acccatttatcatgagaactggagg-ttaacacaaaa-aataaatgagttatatcattgtgatcaattttatttaaaatgtgtcgtggaaatgactgtat |
196 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||| |||||||||| ||||||||| |||| ||||||||||||||||||| || ||||||| |||| |
|
|
| T |
31600536 |
acccatttaccatgagaactggaggattaacacaaaaaaataaatgagatatatcattatgattaattttatttaaaatgtgttgtataaatgaccgtat |
31600635 |
T |
|
| Q |
197 |
cgatatattttacaaaatatgagataatttaaaataatatgaagtgtaaaattaatgatattagtttccgattaatcta-ttacatggtaaaaaaatata |
295 |
Q |
| |
|
||||||||| || |||||||| |||||||||||||||||||| | ||||||||||||| | ||| || | ||||||| | |||||||||||||||| | |
|
|
| T |
31600636 |
tgatatatttgacgaaatatgacataatttaaaataatatgaaatataaaattaatgatgcttgttgccaactaatctagtaacatggtaaaaaaata-a |
31600734 |
T |
|
| Q |
296 |
acatttt |
302 |
Q |
| |
|
||||||| |
|
|
| T |
31600735 |
acatttt |
31600741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 161 - 291
Target Start/End: Original strand, 20463287 - 20463417
Alignment:
| Q |
161 |
aattttatttaaaatgtgtcgtggaaatgactgtatcgatatattttacaaaatatgagataatttaaaataatatgaagtgtaaaattaatgatattag |
260 |
Q |
| |
|
||||| ||||||||||||| ||| ||||||| |||||||||||||||| |||||||||||||| | ||||||||||| || |||||||| | ||||||| |
|
|
| T |
20463287 |
aatttgatttaaaatgtgttgtgaaaatgaccatatcgatatattttacgaaatatgagataatat-aaataatatgacgtataaaattattaatattag |
20463385 |
T |
|
| Q |
261 |
tttccgattaatcta-ttacatggtaaaaaaa |
291 |
Q |
| |
|
|| || ||||||||| | ||| |||||||||| |
|
|
| T |
20463386 |
ttgccaattaatctagtaacaaggtaaaaaaa |
20463417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 151 - 258
Target Start/End: Original strand, 38177789 - 38177896
Alignment:
| Q |
151 |
cattgtgatcaattttatttaaaatgtgtcgtggaaatgactgtatcgatatattttacaaaatatgagataatttaaaataatatgaagtgtaaaatta |
250 |
Q |
| |
|
||||||| | ||||||||||||||||| |||| ||||||| ||| |||||||||||| ||||| |||| ||||||||||||||| |||| |||||||| |
|
|
| T |
38177789 |
cattgtggttaattttatttaaaatgtatcgtagaaatgatcatattgatatattttacgaaataagagacaatttaaaataatataaagtataaaatta |
38177888 |
T |
|
| Q |
251 |
atgatatt |
258 |
Q |
| |
|
|||||||| |
|
|
| T |
38177889 |
atgatatt |
38177896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 262
Target Start/End: Complemental strand, 1098039 - 1097990
Alignment:
| Q |
213 |
atatgagataatttaaaataatatgaagtgtaaaattaatgatattagtt |
262 |
Q |
| |
|
|||||||||||||||||||||||| | | ||||| |||||||||||||| |
|
|
| T |
1098039 |
atatgagataatttaaaataatataacatataaaactaatgatattagtt |
1097990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 7e-50; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 45857956 - 45858232
Alignment:
| Q |
1 |
caaaggataaattgtt--ggaaaacctaagtttgatttttgagtggaacaaatattgtcctgtctttacttacctcctgatcg-gacactagattaccat |
97 |
Q |
| |
|
|||||||||||||||| ||| ||||||| ||||||| ||||||||||||||| |||| | |||| |||||||||||||| | |||||||||||||||| |
|
|
| T |
45857956 |
caaaggataaattgttcaggagaacctaaatttgattcttgagtggaacaaatcttgttcagtctatacttacctcctgacccagacactagattaccat |
45858055 |
T |
|
| Q |
98 |
gacccatttatcatgagaactgga-ggttaacacaaaaaataaatgagttatatcattgtgatcaattttatttaaaatgtgtcgtggaaatgactgtat |
196 |
Q |
| |
|
| ||| | || |||||||||| | |||||||| |||||| || ||| ||||| ||| | | ||||| |||||| |||| ||||||||||| |||| |
|
|
| T |
45858056 |
ggcccctataccatgagaactacaaggttaacaaaaaaaaaaa--gagatatattcgcgtgtttatttttacttaaaacgtgttgtggaaatgaccgtat |
45858153 |
T |
|
| Q |
197 |
cgatatattttacaaaatatgagataatttaaaataatatgaagtgtaaaattaatgatattagtttccgattaatcta |
275 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||| | || ||||||||| |
|
|
| T |
45858154 |
cgatatagtttacaaaatatgagataatttaaaataatataaagtataaaattaatgatattagctgccaattaatcta |
45858232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 187 - 287
Target Start/End: Original strand, 21176290 - 21176390
Alignment:
| Q |
187 |
atgactgtatcgatatattttacaaaatatgagataatttaaaataatatgaagtgtaaaattaatgatattagtttccgattaatcta-ttacatggta |
285 |
Q |
| |
|
||||| ||||| |||||||||||||||| ||||||||| ||||||||||| |||| ||||| ||||||| |||||| | ||||||||| | |||||||| |
|
|
| T |
21176290 |
atgaccgtatcaatatattttacaaaatgtgagataatataaaataatataaagtataaaa-taatgatgttagttgtcaattaatctagtaacatggta |
21176388 |
T |
|
| Q |
286 |
aa |
287 |
Q |
| |
|
|| |
|
|
| T |
21176389 |
aa |
21176390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 205 - 262
Target Start/End: Complemental strand, 51066928 - 51066871
Alignment:
| Q |
205 |
tttacaaaatatgagataatttaaaataatatgaagtgtaaaattaatgatattagtt |
262 |
Q |
| |
|
|||||||||||| | ||||||||||| |||||| ||| ||||| |||||||||||||| |
|
|
| T |
51066928 |
tttacaaaatattaaataatttaaaaaaatatggagtataaaactaatgatattagtt |
51066871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0123 (Bit Score: 96; Significance: 6e-47; HSPs: 1)
Name: scaffold0123
Description:
Target: scaffold0123; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 64 - 262
Target Start/End: Complemental strand, 23440 - 23241
Alignment:
| Q |
64 |
ttacttacctcctgatcggacactagattaccatgacccatttatcatgagaactgga-ggttaacacaaaaaataaatgagttatatcattgtgatcaa |
162 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||||| ||| || || | |||||| |||||||||||||||| ||| |||||||| | || |
|
|
| T |
23440 |
ttacttacctcctgatcggacactggattaccatgacctatttaccataggatctcaagggttaaaacaaaaaataaatgagatatttcattgtggttaa |
23341 |
T |
|
| Q |
163 |
ttttatttaaaatgtgtcgtggaaatgactgtatcgatatattttacaaaatatgagataatttaaaataatatgaagtgtaaaattaatgatattagtt |
262 |
Q |
| |
|
||||||||||||||||| || | |||| | | ||||||||||||||| |||||||||||| ||||||||||||| |||| ||||||||||||| |||||| |
|
|
| T |
23340 |
ttttatttaaaatgtgttgttggaatggcggcatcgatatattttacgaaatatgagatagtttaaaataatataaagtataaaattaatgattttagtt |
23241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 1e-42; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 66 - 262
Target Start/End: Complemental strand, 29456850 - 29456648
Alignment:
| Q |
66 |
acttacctcct-gatcggacactagattaccatgacccattt-atcatgagaactggagg-ttaacacaaaaaataaat---gagttatatcattgtgat |
159 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| | |||||||||| |||| ||||||||||||| ||| ||| ||| |||||||| | |
|
|
| T |
29456850 |
acttacctccttgatcggacactagattaccatgacccattttaccatgagaactcgagggttaacacaaaaaaaaaaaaaagagatatttcattgtggt |
29456751 |
T |
|
| Q |
160 |
caattttatttaaaatgtgtcgtggaaatgactgtatcgatatattttacaaaatatgagataatttaaaataatatgaagtgtaaaattaatgatatta |
259 |
Q |
| |
|
||||||||||||||||||| || | |||| || |||||||||| |||| |||||||||||||||||||||||||| |||| |||||||| |||||||| |
|
|
| T |
29456750 |
taattttatttaaaatgtgttgttggaatggctacatcgatatatattacgaaatatgagataatttaaaataatataaagtataaaattattgatatta |
29456651 |
T |
|
| Q |
260 |
gtt |
262 |
Q |
| |
|
||| |
|
|
| T |
29456650 |
gtt |
29456648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 72 - 216
Target Start/End: Original strand, 11708610 - 11708753
Alignment:
| Q |
72 |
ctcctgatcggacactagattaccatgacccatttatcatgagaactgga-ggttaacacaaaaaataaatgagttatatcattgtgatcaattttattt |
170 |
Q |
| |
|
||||| ||||||||| ||||||||||||| | ||| ||||||||| ||| |||| |||||||| | |||||| |||||||||||| | ||| ||||| |
|
|
| T |
11708610 |
ctcctaatcggacaccagattaccatgactcctttcccatgagaaccggaaggttgacacaaaa--tgaatgagatatatcattgtggttcattctattt |
11708707 |
T |
|
| Q |
171 |
aaaatgtgtcgtggaaatgactgtatcgatatattttacaaaatat |
216 |
Q |
| |
|
||||||||| |||| ||||| |||||||||||| ||| |||||| |
|
|
| T |
11708708 |
aaaatgtgttctggagatgaccatatcgatatattatacgaaatat |
11708753 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 275
Target Start/End: Complemental strand, 44100418 - 44100337
Alignment:
| Q |
194 |
tatcgatatattttacaaaatatgagataatttaaaataatatgaagtgtaaaattaatgatattagtttccgattaatcta |
275 |
Q |
| |
|
|||| |||||| |||| |||||| | ||||||| ||||| ||| |||| |||| |||||||||||||| || ||||||||| |
|
|
| T |
44100418 |
tatcaatatatattacgaaatataaaataattttaaatagtattaagtacaaaactaatgatattagttgccaattaatcta |
44100337 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 167 - 262
Target Start/End: Original strand, 29894 - 29989
Alignment:
| Q |
167 |
atttaaaatgtgtcgtggaaatgactgtatcgatatattttacaaaatatgagataatttaaaataatatgaagtgtaaaattaatgatattagtt |
262 |
Q |
| |
|
||||||||||||| ||||||| ||| |||||||| |||||| ||||||||||||||||||||| |||||||| | ||||| |||||||||||||| |
|
|
| T |
29894 |
atttaaaatgtgttgtggaaaggacactatcgatagattttagaaaatatgagataatttaaaacaatatgaaatataaaactaatgatattagtt |
29989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 167 - 262
Target Start/End: Complemental strand, 31013262 - 31013167
Alignment:
| Q |
167 |
atttaaaatgtgtcgtggaaatgactgtatcgatatattttacaaaatatgagataatttaaaataatatgaagtgtaaaattaatgatattagtt |
262 |
Q |
| |
|
||||||||||||| ||||||| ||| |||| ||||||||||||||||||||| |||||||||| |||||||| | ||||| |||||||||||||| |
|
|
| T |
31013262 |
atttaaaatgtgttgtggaaaggacaatatcaatatattttacaaaatatgaggtaatttaaaacaatatgaaatataaaactaatgatattagtt |
31013167 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 200 - 259
Target Start/End: Original strand, 3108 - 3167
Alignment:
| Q |
200 |
tatattttacaaaatatgagataatttaaaataatatgaagtgtaaaattaatgatatta |
259 |
Q |
| |
|
||||||| || |||||| |||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
3108 |
tatatttgactaaatataagataatttaaaataatatgaagtataaaactaatgatatta |
3167 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 167 - 230
Target Start/End: Original strand, 36903886 - 36903949
Alignment:
| Q |
167 |
atttaaaatgtgtcgtggaaatgactgtatcgatatattttacaaaatatgagataatttaaaa |
230 |
Q |
| |
|
||||||||||||| |||| | |||| |||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
36903886 |
atttaaaatgtgttatggataggactatatcaatatattttacaaaatataagataatttaaaa |
36903949 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 247
Target Start/End: Original strand, 2238655 - 2238698
Alignment:
| Q |
204 |
ttttacaaaatatgagataatttaaaataatatgaagtgtaaaa |
247 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||| ||||| |
|
|
| T |
2238655 |
ttttacaaaatatgagataatttaaaatgatataaagtataaaa |
2238698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 285
Target Start/End: Complemental strand, 4721899 - 4721808
Alignment:
| Q |
194 |
tatcgatatattttacaaaatatgagataatttaaaataatatgaagtgtaaaattaatgatattagtttccgattaatctattacatggta |
285 |
Q |
| |
|
|||||||| | |||| |||||||||| ||||||| | ||||| |||| ||||||||||||||||||| || |||||| || || |||||| |
|
|
| T |
4721899 |
tatcgataaactttatgaaatatgagacaatttaagagaatataaagtacaaaattaatgatattagttgccaattaatatagtaaatggta |
4721808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 275
Target Start/End: Complemental strand, 32491504 - 32491442
Alignment:
| Q |
213 |
atatgagataatttaaaataatatgaagtgtaaaattaatgatattagtttccgattaatcta |
275 |
Q |
| |
|
|||||||||||||||||||||||| | | |||||||||||||||||||| | ||||||||| |
|
|
| T |
32491504 |
atatgagataatttaaaataatataacatataaaattaatgatattagttgtcaattaatcta |
32491442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 262
Target Start/End: Complemental strand, 37225802 - 37225683
Alignment:
| Q |
143 |
agttatatcattgtgatcaattttatttaaaatgtgtcgtggaaatgactgtatcgatatattttacaaaatatgagataatttaaaataatatgaagtg |
242 |
Q |
| |
|
||||||||||||||| | ||| ||||||||||||| | || || || |||| |||||||||| ||||| |||||||||||||| ||| |||| |
|
|
| T |
37225802 |
agttatatcattgtggttcattccatttaaaatgtgttatagagataaccatatcaatatattttatgaaatacaagataatttaaaattgtattaagta |
37225703 |
T |
|
| Q |
243 |
taaaattaatgatattagtt |
262 |
Q |
| |
|
||||| |||||||||||||| |
|
|
| T |
37225702 |
taaaactaatgatattagtt |
37225683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 262
Target Start/End: Complemental strand, 6552911 - 6552862
Alignment:
| Q |
213 |
atatgagataatttaaaataatatgaagtgtaaaattaatgatattagtt |
262 |
Q |
| |
|
|||||||||||||||||||||||| | | ||||| |||||||||||||| |
|
|
| T |
6552911 |
atatgagataatttaaaataatataatatataaaactaatgatattagtt |
6552862 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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