View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20382_low_16 (Length: 424)
Name: NF20382_low_16
Description: NF20382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20382_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 1e-85; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 20 - 280
Target Start/End: Complemental strand, 1592979 - 1592709
Alignment:
| Q |
20 |
acaagagtattattgtactgataaggtcccttcccattgataagaacacaatctggtattccaagg-cttttccaccatcaagtgttgatcttagagcct |
118 |
Q |
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| T |
1592979 |
acaagagtattattgtactgataaggtcccttcccattgataagaacaccatctggtattccaaggtcttttccaccgtcaagtgttgatcttagagcct |
1592880 |
T |
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| Q |
119 |
atatttatcaaacaaacatacaaaatagcaattaaatatcaataaaaa--cacaacattttcaaaatttatagaagaaagttaaatgaaaggcaataact |
216 |
Q |
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| T |
1592879 |
atatttatcaaaaaaacatacaaaatagcaatcaaatatcaataaaaactcacaacatcttcagaatttacagaagaaagtctaatgaaaggtgataact |
1592780 |
T |
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| Q |
217 |
aaacgtgtagtcctgatt-----aat--ccaatcataatgaaaattttgccgtcgggctgcgcgaaaggaa |
280 |
Q |
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| T |
1592779 |
aaccgtgtagtcctgagtataccaatcaccaatcataatgaaaatttcaccgtcgggctgcgcgaaaggaa |
1592709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 18 - 168
Target Start/End: Original strand, 6097816 - 6097967
Alignment:
| Q |
18 |
ggacaagagtattattgtactgataaggtcccttcccattgataagaacacaatctggta---ttccaaggcttttccaccatcaagtgttgatcttaga |
114 |
Q |
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| T |
6097816 |
ggacaagagtattattgtactgataaggtc--ttcccattgataagaacacaatctggtactattccaaggcttttccaccatcaaatgttgatcttaga |
6097913 |
T |
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| Q |
115 |
gcctatatttatcaaacaaacatacaaaatagcaattaaatatcaataaaaaca |
168 |
Q |
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| T |
6097914 |
gcctatatttatcaaacaaacatacaaaatagcaattaaatatcaataaaaaca |
6097967 |
T |
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