View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20382_low_17 (Length: 408)
Name: NF20382_low_17
Description: NF20382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20382_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 15 - 326
Target Start/End: Original strand, 39839333 - 39839644
Alignment:
| Q |
15 |
atgaagttgagtatatttgtaggtggcttgttgttgctaccggcgaaaatgctgagtgtgttactcctgaaattgaaggactttctgaattcaaaggtga |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39839333 |
atgaagttgagtatatttgtaggtggcttgttgttgctaccggcgaaaatgctgagtgtgttactcctgaaattgaaggactttctgaattcaaaggtga |
39839432 |
T |
|
| Q |
115 |
agttgtttatgcttgtgattacaagtcagggaaaaattttgaaggaaagaaagttcttgttgttggatgtggaaattctggaatggaactctcacttgat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39839433 |
agttgtttatgcttgtgattacaagtcagggaaaaattttgaaggaaagaaagttcttgttgttggatgtggaaattctggaatggaactctcacttgat |
39839532 |
T |
|
| Q |
215 |
cttagcaatcatcatgctttaccttccatggttgttcgtagctcggtaggttccttttatgtgtctggtatctgtgtcagtgcttcatagtaattctttt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39839533 |
cttagcaatcatcatgctttaccttccatggttgttcgtagctcggtaagttccttttatgtgtctggtatctgtgtcagtgcttcatagtaattctttt |
39839632 |
T |
|
| Q |
315 |
ttaacttttgtg |
326 |
Q |
| |
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|||||||||||| |
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| T |
39839633 |
ttaacttttgtg |
39839644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 15 - 326
Target Start/End: Complemental strand, 39733625 - 39733314
Alignment:
| Q |
15 |
atgaagttgagtatatttgtaggtggcttgttgttgctaccggcgaaaatgctgagtgtgttactcctgaaattgaaggactttctgaattcaaaggtga |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39733625 |
atgaagttgagtatatttgtaggtggcttgttgttgctaccggcgaaaatgctgagtgtgttactcctgaaattgaaggactttctgaattcaaaggtga |
39733526 |
T |
|
| Q |
115 |
agttgtttatgcttgtgattacaagtcagggaaaaattttgaaggaaagaaagttcttgttgttggatgtggaaattctggaatggaactctcacttgat |
214 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39733525 |
agttgtttatgcttgtgattacaagtcagggaaaaattttgaaggaaagaaagttcttgttgttggatgtggaaattctggaatggaactctcacttgat |
39733426 |
T |
|
| Q |
215 |
cttagcaatcatcatgctttaccttccatggttgttcgtagctcggtaggttccttttatgtgtctggtatctgtgtcagtgcttcatagtaattctttt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
39733425 |
cttagcaatcatcatgctttaccttccatggttgttcgtagctcggtaagttccttttatgtgtctggtatatgtgtcagtgcttcatagtaattctttt |
39733326 |
T |
|
| Q |
315 |
ttaacttttgtg |
326 |
Q |
| |
|
|||||||||||| |
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| T |
39733325 |
ttaacttttgtg |
39733314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 31290472 - 31290504
Alignment:
| Q |
21 |
ttgagtatatttgtaggtggcttgttgttgcta |
53 |
Q |
| |
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||||| ||||||||||||||||||||||||||| |
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| T |
31290472 |
ttgagaatatttgtaggtggcttgttgttgcta |
31290504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 15 - 262
Target Start/End: Complemental strand, 29857685 - 29857435
Alignment:
| Q |
15 |
atgaagttgagtatatttgtaggtggcttgttgttgctaccggcgaaaatgctgagtgtgttactcctgaaattgaaggact---ttctgaattcaaagg |
111 |
Q |
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|||||||||||||||||||||||| |||||| |||||||| || || ||||| ||||||||| ||| | |||||||| | | ||||||||| || |
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| T |
29857685 |
atgaagttgagtatatttgtaggtcgcttgtggttgctactggtgagaatgcagagtgtgttgtgccttatattgaagggttaggtggtgaattcaaggg |
29857586 |
T |
|
| Q |
112 |
tgaagttgtttatgcttgtgattacaagtcagggaaaaattttgaaggaaagaaagttcttgttgttggatgtggaaattctggaatggaactctcactt |
211 |
Q |
| |
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|||| || || ||||||||||||| || ||||| ||| |||| ||| ||||||||| | |||||||| ||||| ||||||||||||||||| || ||| |
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| T |
29857585 |
tgaaattattcatgcttgtgattataaatcaggtgaaagttttagagggaagaaagttttggttgttggttgtggtaattctggaatggaactttctctt |
29857486 |
T |
|
| Q |
212 |
gatcttagcaatcatcatgctttaccttccatggttgttcgtagctcggta |
262 |
Q |
| |
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|||||| |||||||| |||| | |||||| || ||| |||||||||||||| |
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| T |
29857485 |
gatctttgcaatcataatgcatcaccttctattgttcttcgtagctcggta |
29857435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 17407974 - 17408021
Alignment:
| Q |
16 |
tgaagttgagtatatttgtaggtggcttgttgttgctaccggcgaaaa |
63 |
Q |
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| T |
17407974 |
tgaagttgagtatatttgtaggtggcttgtggttgctaccggtgaaaa |
17408021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 158 - 217
Target Start/End: Original strand, 17408116 - 17408175
Alignment:
| Q |
158 |
ggaaagaaagttcttgttgttggatgtggaaattctggaatggaactctcacttgatctt |
217 |
Q |
| |
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||||| || ||||||||||||||||||||||||||||| |||||| | || ||||||||| |
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| T |
17408116 |
ggaaaaaatgttcttgttgttggatgtggaaattctggcatggaagtttctcttgatctt |
17408175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 307
Target Start/End: Complemental strand, 19040219 - 19040190
Alignment:
| Q |
278 |
tctggtatctgtgtcagtgcttcatagtaa |
307 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
19040219 |
tctggtatctgtgtcagtgcttcatagtaa |
19040190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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