View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20382_low_18 (Length: 395)
Name: NF20382_low_18
Description: NF20382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20382_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 39310063 - 39310311
Alignment:
| Q |
1 |
tagagtattgtcatcatatacaaagctcataaatcataagccaccaaagacaattgaagaagcaattttccagaagtagatagcaatcatcatctttacg |
100 |
Q |
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| T |
39310063 |
tagagtattgtcatcatatacaaagctcataaatcataagccaccaaagacaattgaagaagcaattttccagaagtagatagcaatcatcatctttacg |
39310162 |
T |
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| Q |
101 |
attgatatgagttgaattttgagac-------atgtatatatgttttctagtgatacaaacaagatctattggtccacagctagtttgtgtcgagttcta |
193 |
Q |
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| T |
39310163 |
attgatatgagttgaactttgagacatatgatatgtatatatattttctactgatacaaacaagacctattgccccacagctagtttgtgtcgagttcta |
39310262 |
T |
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| Q |
194 |
ctatgacgccttaggccggtacttgaaaattgtccaaagccaattgaag |
242 |
Q |
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| T |
39310263 |
ttatgacgccctaggccggtacttgaaaattgtccaaagccagttgaag |
39310311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 69 - 163
Target Start/End: Original strand, 38848444 - 38848540
Alignment:
| Q |
69 |
tccagaagtagatagcaatcatcat---ctttacgattgatatgagttgaattttgagacatgtatatatgttttctagtgatacaaacaagatctat |
163 |
Q |
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| T |
38848444 |
tccataagtagatcgcaatcatcatattctttacgattaatattagttgaa-tttgagtcatgtatataagttttcaactgatataaacaagacctat |
38848540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 370
Target Start/End: Original strand, 38848620 - 38848653
Alignment:
| Q |
337 |
atgttttcttttgtttttaccaactaacattgat |
370 |
Q |
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| T |
38848620 |
atgttttcttttgtttttaccaactatcattgat |
38848653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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