View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20382_low_2 (Length: 771)
Name: NF20382_low_2
Description: NF20382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20382_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 294 - 630
Target Start/End: Original strand, 33250767 - 33251103
Alignment:
| Q |
294 |
aattcaaaattggagctatgaaataattaccaagatcaaacttttctaaaggattagttataggaaatggtcaaaagaaccatacctctcgcctaacttc |
393 |
Q |
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| T |
33250767 |
aattcaaaattggagctatgaaataattaccaagatcaaacttttctaaaggattagttataggaagtggtcaaaagaaccatacctctcgcctaacttc |
33250866 |
T |
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| Q |
394 |
agccataagggacaccatttcgtccacaaaatcagaaaaatcctaaaattagaaacaaggcatgtttttcagaaccataataatataacaaactaataaa |
493 |
Q |
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| T |
33250867 |
agccataagggacaccatttcgtccacaaaatcagaaaaatcctaaaattagaaacaatgcatgtctttcagcaccataataatataacaaactaataaa |
33250966 |
T |
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| Q |
494 |
caaaaaagaaacaatcttcaaggaaaactacaggaaaattttccataagcacataattacctcaacttcttcctcttgaggatcatacaagccagcatcg |
593 |
Q |
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| T |
33250967 |
caaaaacgaaacaatcttcaagaaaaactacaggaaaaatttccataagcacataattacctcaacttcttcctcttgaggatcatacaagccagcatcg |
33251066 |
T |
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| Q |
594 |
tacatacttcttttcttgggatcagatagcactgctc |
630 |
Q |
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| T |
33251067 |
tacatacttcttttcttgggatcagatagcactgctc |
33251103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 33250500 - 33250688
Alignment:
| Q |
1 |
atatgggccggcttatattatcaattatcgtgtcaaaacacttcctctgttagcaaaggattcatcaaccaccgatggtgtcccacaatacattgaagga |
100 |
Q |
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| T |
33250500 |
atatggcccggcttatattatcaattatcgtgtcaaaacacttcctctgttagcaaaggattcatcaaccaccgatggtgtcccacaatacactgaagga |
33250599 |
T |
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| Q |
101 |
ctctggaatccttcagccatttccatgaacatgtcctgcaactcctccaaaccataaaccttctcctgcaagaatgtttttgtgacatg |
189 |
Q |
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| T |
33250600 |
ctctggaatccttcagccatttccatgaacatgtcctgcaactcctccaaaccataaaccttctcctgcaagaatgtttttgtgacatg |
33250688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 721 - 755
Target Start/End: Original strand, 33251205 - 33251239
Alignment:
| Q |
721 |
atacctgaataagcttcttgaatgttctgaaattt |
755 |
Q |
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| T |
33251205 |
atacctgaataagcttcttgaatgttctgaaattt |
33251239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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