View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20382_low_21 (Length: 342)
Name: NF20382_low_21
Description: NF20382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20382_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 9e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 142 - 328
Target Start/End: Original strand, 30392301 - 30392487
Alignment:
| Q |
142 |
gtataccggttcgatcctagtggtttgaacttactttgataggatgtacgtaaaattcaactttaaacaaaatacattaaccacttgaatttattttggt |
241 |
Q |
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| T |
30392301 |
gtataccggttcgatcctagtggtttgaacttattttgataggatgtacgtaaaattcaactttaaacaaaatacattaaccacttgaatttattttagt |
30392400 |
T |
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| Q |
242 |
tgaacgtaagactttaaattatgttaagcaacgtgtctcatagcactaccactggcaatctagcaccaatttaaaccaagtaattag |
328 |
Q |
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| T |
30392401 |
tgaacgtaagactttaaattatgttaagcaacgtgtctcatagcactaccaccggcaatctagcaccaatttaaaccaagcaattag |
30392487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 30392167 - 30392226
Alignment:
| Q |
7 |
ggtctaagagagtggagttatggagatatattaaagtgcttacttgttatggtagaatat |
66 |
Q |
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| T |
30392167 |
ggtctaaaagagtggagttatggagatatattaaagtgcttactagttatggtagaatat |
30392226 |
T |
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