View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20382_low_24 (Length: 306)
Name: NF20382_low_24
Description: NF20382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20382_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 52 - 290
Target Start/End: Original strand, 7227450 - 7227688
Alignment:
| Q |
52 |
gcctaaagtctacggaacccaggtttccgcatagtctgcaactaggaggtttgataagcatgtcagaggagatctatgaactacaagctctaaagtagaa |
151 |
Q |
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| T |
7227450 |
gcctaaagtctacggaacccaggtttccgcatagtctgcaactaggaggtttgataagcatgtcagaggagatctatgaactacaagctctaaagtagaa |
7227549 |
T |
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| Q |
152 |
gaatcaccaagtttagctaggaaatatacacaattctttctctgagggtgtgatcaatggaagctagtcagtcaaggtcgaggagatcatagatgtcttg |
251 |
Q |
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| T |
7227550 |
gaatcaccaagtgtagctaggaaatatacacaattctttctccaagggtgtgatcaatggaagctagtcaatcaaggttgaggagatcatagatgtcttg |
7227649 |
T |
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| Q |
252 |
aatcaacgtagcatactcatgaaatttagaagttgtctc |
290 |
Q |
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| T |
7227650 |
aatcaacgtagcatactcatgaaatttagaagttgtctc |
7227688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 54 - 273
Target Start/End: Original strand, 7208485 - 7208706
Alignment:
| Q |
54 |
ctaaagtctacggaacccaggtttccgcatagtctgcaactaggaggtttgataagcatgtcagaggagatctatgaactacaagctctaaagtagaaga |
153 |
Q |
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| T |
7208485 |
ctaaagtctactgaacccaagtttccgcgtagtctgcgactaggaggtttgataagcatgttagaggatatctacgaactacaatctctaaagtagaaga |
7208584 |
T |
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| Q |
154 |
atcaccaagtttagctaggaaatatacacaattct--ttctctgagggtgtgatcaatggaagctagtcagtcaaggtcgaggagatcatagatgtcttg |
251 |
Q |
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| T |
7208585 |
atcaccaagtttagctaggaaatatgcacaactcttcttctccgagggtgtgatcaatggaaaccagacagtcaaggtcgaggagatcctagatgtcttg |
7208684 |
T |
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| Q |
252 |
aatcaacgtagcatactcatga |
273 |
Q |
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| T |
7208685 |
aatcaacgtagcatactcatga |
7208706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 262
Target Start/End: Complemental strand, 46693110 - 46693043
Alignment:
| Q |
195 |
gagggtgtgatcaatggaagctagtcagtcaaggtcgaggagatcatagatgtcttgaatcaacgtag |
262 |
Q |
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| T |
46693110 |
gagggtgtgagcaatggaagctagtcagccaaggttgaggagagttttgatgtcatgaatcaacgtag |
46693043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 268
Target Start/End: Original strand, 6797450 - 6797519
Alignment:
| Q |
199 |
gtgtgatcaatggaagctagtcagtcaaggtcgaggagatcatagatgtcttgaatcaacgtagcatact |
268 |
Q |
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| T |
6797450 |
gtgtgatcaatagaagcttgccagttaagattgaggagatccttgatgttttgaatcaacgtagcatact |
6797519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 276
Target Start/End: Complemental strand, 47403426 - 47403361
Alignment:
| Q |
211 |
gaagctagtcagtcaaggtcgaggagatcatagatgtcttgaatcaacgtagcatactcatgaaat |
276 |
Q |
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| T |
47403426 |
gaagctagccagtcaagattgaggaggtccttgatgtcttgaatcaaagtagcatacttatgaaat |
47403361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 268
Target Start/End: Complemental strand, 8838477 - 8838408
Alignment:
| Q |
199 |
gtgtgatcaatggaagctagtcagtcaaggtcgaggagatcatagatgtcttgaatcaacgtagcatact |
268 |
Q |
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| T |
8838477 |
gtgtgatcaacggaagctagccaatgaagattgaggaggtccttgatgtcttgaatcaatgtagcatact |
8838408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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