View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20382_low_25 (Length: 288)

Name: NF20382_low_25
Description: NF20382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20382_low_25
NF20382_low_25
[»] chr7 (2 HSPs)
chr7 (30-270)||(5378777-5379017)
chr7 (30-63)||(37856069-37856102)
[»] chr6 (4 HSPs)
chr6 (63-272)||(19001444-19001656)
chr6 (99-179)||(22324750-22324830)
chr6 (99-179)||(22680076-22680156)
chr6 (169-241)||(22324859-22324931)
[»] chr5 (1 HSPs)
chr5 (99-179)||(27031815-27031895)
[»] chr3 (3 HSPs)
chr3 (99-179)||(23220039-23220119)
chr3 (30-66)||(34733179-34733215)
chr3 (30-62)||(52727337-52727369)
[»] chr8 (1 HSPs)
chr8 (99-179)||(22644560-22644640)
[»] scaffold0026 (1 HSPs)
scaffold0026 (30-62)||(113775-113807)


Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 30 - 270
Target Start/End: Original strand, 5378777 - 5379017
Alignment:
Q  30 ttgtctcaaatagatgtttaaatatcactactcattagagaatgagcatttcagtacttttgtttagcatttttagaagaacatcggggagataatgata 129  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5378777 ttgtctcaaatggatgtttaaatatcactactcattagagaatgagtatttcagtacttttgcttagcatttttagaagaacatcggggagataatgata 5378876  T
Q  130 ggtaaacataattattaggcattgaatatgttagggaatttcattgtacactgtttattaaacacatttgttttctttaatattttgacatttttaatcg 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |    
T  5378877 ggtaaacataattattaggcattgaatatgttagggaatttcattgtatactctttattaaacacatttgttttctttaatattttgacatttttaatgg 5378976  T
Q  230 tatgtctcttctctatacgtccacaagattaatttcctcta 270  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  5378977 tatgtctcttctctatacgtccacaagattaatttcctcta 5379017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 63
Target Start/End: Complemental strand, 37856102 - 37856069
Alignment:
Q  30 ttgtctcaaatagatgtttaaatatcactactca 63  Q
    |||| |||||||||||||||||||||||||||||    
T  37856102 ttgtttcaaatagatgtttaaatatcactactca 37856069  T

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Target: chr6 (Bit Score: 167; Significance: 2e-89; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 63 - 272
Target Start/End: Original strand, 19001444 - 19001656
Alignment:
Q  63 attagagaatgagcatttcagtactttt---gtttagcatttttagaagaacatcggggagataatgataggtaaacataattattaggcattgaatatg 159  Q
    ||||||||||||| ||||||||||||||   |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  19001444 attagagaatgagtatttcagtactttttttgtttggcatttttagaagaacatcggggagataatgataggtaaacataattattagacattgaatatg 19001543  T
Q  160 ttagggaatttcattgtacactgtttattaaacacatttgttttctttaatattttgacatttttaatcgtatgtctcttctctatacgtccacaagatt 259  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  19001544 ttagggaatttcattgtacagtgtttattaaacacatttgttttctttattattttgacatttttaatggtatgtctcttctctatacttccacaagatt 19001643  T
Q  260 aatttcctctaat 272  Q
    ||||| |||||||    
T  19001644 aatttgctctaat 19001656  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 99 - 179
Target Start/End: Original strand, 22324750 - 22324830
Alignment:
Q  99 tttttagaagaacatcggggagataatgataggtaaacataattattaggcattgaatatgttagggaatttcattgtaca 179  Q
    ||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||    
T  22324750 tttttagaagaacatcgaggagataatgataggtaaacataatggttaggcattgaatatgttagggattttcattgtaca 22324830  T

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Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 99 - 179
Target Start/End: Original strand, 22680076 - 22680156
Alignment:
Q  99 tttttagaagaacatcggggagataatgataggtaaacataattattaggcattgaatatgttagggaatttcattgtaca 179  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  22680076 tttttagaagaacaatggggagataatgataggtaaacataattattaggcattgaatatgtaagggattttcattgtaca 22680156  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 22324859 - 22324931
Alignment:
Q  169 ttcattgtacactgtttattaaacacatttgttttctttaatattttgacatttttaatcgtatgtctcttct 241  Q
    ||||||||||| || ||||||||||||||||||||||||| |||||| | ||||| ||| | |||||||||||    
T  22324859 ttcattgtacattgcttattaaacacatttgttttctttattattttaaaattttcaatggaatgtctcttct 22324931  T

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Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 99 - 179
Target Start/End: Original strand, 27031815 - 27031895
Alignment:
Q  99 tttttagaagaacatcggggagataatgataggtaaacataattattaggcattgaatatgttagggaatttcattgtaca 179  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  27031815 tttttagaagaacaatggggagataatgataggtaaacataattattaggcattgaatatgtaagggattttcattgtaca 27031895  T

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Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 99 - 179
Target Start/End: Original strand, 23220039 - 23220119
Alignment:
Q  99 tttttagaagaacatcggggagataatgataggtaaacataattattaggcattgaatatgttagggaatttcattgtaca 179  Q
    ||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||    
T  23220039 tttttagaagaacatccaggagataatgataggtaaatataattattaggcattgaatatattagggattttcattgtaca 23220119  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 34733215 - 34733179
Alignment:
Q  30 ttgtctcaaatagatgtttaaatatcactactcatta 66  Q
    |||| ||||||||||||| ||||||||||||||||||    
T  34733215 ttgtttcaaatagatgttcaaatatcactactcatta 34733179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 52727369 - 52727337
Alignment:
Q  30 ttgtctcaaatagatgtttaaatatcactactc 62  Q
    |||| ||||||||||||||||||||||||||||    
T  52727369 ttgtttcaaatagatgtttaaatatcactactc 52727337  T

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Target: chr8 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 99 - 179
Target Start/End: Complemental strand, 22644640 - 22644560
Alignment:
Q  99 tttttagaagaacatcggggagataatgataggtaaacataattattaggcattgaatatgttagggaatttcattgtaca 179  Q
    |||||||||||| |  ||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||    
T  22644640 tttttagaagaataatggggagataatgatagggaaacataattattaggcattgaatatgtaagggattttcattgtaca 22644560  T

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Target: scaffold0026 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 113775 - 113807
Alignment:
Q  30 ttgtctcaaatagatgtttaaatatcactactc 62  Q
    |||| ||||||||||||||||||||||||||||    
T  113775 ttgtttcaaatagatgtttaaatatcactactc 113807  T

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