View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20382_low_3 (Length: 720)
Name: NF20382_low_3
Description: NF20382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20382_low_3 |
 | |
|
| [»] scaffold0014 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0014 (Bit Score: 515; Significance: 0; HSPs: 2)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 41 - 610
Target Start/End: Complemental strand, 73379 - 72809
Alignment:
| Q |
41 |
gtacttacatatgttttaccggatcagttttaaaatacccttggagtatgggatcttagaagttgatctctcaattagagggagggacactcggtatgga |
140 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
73379 |
gtacttacatatgttttacgagatcagttttaaaatacccttggagtatgggatcttagaatttgatctctcaattagagggagggacattcggtatgga |
73280 |
T |
|
| Q |
141 |
aacattcgttggatgtaacttatagaggatcgaaaaaatctaaataattctcgacagcttgtatcagttgactcctactacgctactactgtcacctttg |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
73279 |
aacattcgttggatgtaacttatagaggatcgaaaaaatctaaataattctcgacagtttgtgtcagctgactcctacgacgctactactgtcacctttg |
73180 |
T |
|
| Q |
241 |
ttgaccggcttctctattatgactcatgattcaattaagggaaatgttaacgaggtatcaactttgctgaaaattccctcaagaatgacatcaaacaaac |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
73179 |
ttgaccggcttctctattatgactcatgattcaattaagggaaatgttaacgaggtatcaactttgctgaaaattccctcaagaatgacatcaaacaaac |
73080 |
T |
|
| Q |
341 |
ttaaatcctgcacaactttgctg-atctaccacccctaaaagccttggtagcacgaggtatcaatccgaggtcaagagaacaaacgtgaagcctttgatc |
439 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
73079 |
ttaaatcctgcacaactttgctgaagctaccacccctaaaagccttggtagcacgaggtatcaatccaaggtcaacagaacaaacgtgaagcctttgatc |
72980 |
T |
|
| Q |
440 |
atcaaaatcatgaattcagtataatgctaactcagcttcataagtgtgcattaatttgagatgataactgagcaaacttccgatattccatgtacttgga |
539 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
72979 |
atcaaaatcatgaattcagtataatgctaacccagcttcataagtgtgcattaatttgagatgataactgagcaaacttccgatattccatgtacttgga |
72880 |
T |
|
| Q |
540 |
tcacattcatcttgaatcctattcacaccacttcaagtcaagtgttaaagtgagagctgctttgaatttta |
610 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
72879 |
tcacattcatcttgaatcctattcacaccacttcaagtcaagtgttaaagtgagagctgctttgaatttta |
72809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 576 - 694
Target Start/End: Complemental strand, 66648 - 66531
Alignment:
| Q |
576 |
gtcaagtgttaaagtgagagctgctttgaattttatatacattaacagaagtgagaacttttttatgtaccgcttttcttggctttttaaggtttagaag |
675 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
66648 |
gtcaagtgttaaagtgagagctgttttgaattttatattcatcaacagaagtgaggacttttttatgtacc-cttttcttggctttttaaggtttagaag |
66550 |
T |
|
| Q |
676 |
aataattcagcaagcattt |
694 |
Q |
| |
|
||||||||||| ||||||| |
|
|
| T |
66549 |
aataattcagctagcattt |
66531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 649 - 680
Target Start/End: Complemental strand, 31987190 - 31987159
Alignment:
| Q |
649 |
ttttcttggctttttaaggtttagaagaataa |
680 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
31987190 |
ttttcttggctttttaaggtttagaagaataa |
31987159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 308 - 397
Target Start/End: Original strand, 49067680 - 49067770
Alignment:
| Q |
308 |
tgaaaattccctcaagaatgacatcaaacaaacttaaatcctgcacaactttgctg-atctaccacccctaaaagccttggtagcacgagg |
397 |
Q |
| |
|
|||||| ||||||||||||||||| |||| | ||||||||||||||||||||| | ||||||| || |||| |||||||||||||| |
|
|
| T |
49067680 |
tgaaaaatccctcaagaatgacataaaacccggtcaaatcctgcacaactttgctgaagctaccacttctgaaagatttggtagcacgagg |
49067770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University