View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20382_low_30 (Length: 245)

Name: NF20382_low_30
Description: NF20382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20382_low_30
NF20382_low_30
[»] chr8 (6 HSPs)
chr8 (142-234)||(38815547-38815639)
chr8 (1-75)||(38815946-38816020)
chr8 (74-146)||(38815728-38815800)
chr8 (1-138)||(39456470-39456608)
chr8 (145-214)||(39456301-39456371)
chr8 (142-214)||(39464003-39464076)
[»] chr1 (1 HSPs)
chr1 (1-145)||(39407095-39407241)
[»] chr5 (1 HSPs)
chr5 (1-136)||(20148233-20148376)
[»] scaffold0095 (3 HSPs)
scaffold0095 (1-138)||(13132-13270)
scaffold0095 (145-214)||(13369-13439)
scaffold0095 (142-214)||(24425-24498)
[»] chr2 (4 HSPs)
chr2 (58-114)||(12081236-12081292)
chr2 (1-106)||(12088078-12088185)
chr2 (145-234)||(12087859-12087948)
chr2 (143-234)||(12081045-12081135)


Alignment Details
Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 142 - 234
Target Start/End: Complemental strand, 38815639 - 38815547
Alignment:
Q  142 caccactcaagcttctttgtgcaaataggctcacttgtctttcagcacatggcttaattttaaccttctttttctaaactagatctgcttcat 234  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38815639 caccactcaagcttctttgtgcaaataggctcacttgtctttcagcacatggcttaattttaaccttctttttctaaactagatctgcttcat 38815547  T

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Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 38816020 - 38815946
Alignment:
Q  1 tatccaaccaaatggaatgctatagaactttagttagtattgcaataatcaatataatcatttcttaaccacata 75  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816020 tatccaaccaaatggaatgctatagaactttagttagtattgcaataatcaatataatcatttcttaaccacata 38815946  T

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Target: chr8; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 74 - 146
Target Start/End: Complemental strand, 38815800 - 38815728
Alignment:
Q  74 taagatttagccaattgaaagttgaaatagcatcatagatcgcattctaccacaaggggcatttgcagcacca 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  38815800 taagatttagccaattgaaagttgaaatagcatcatagatcgcattctaccacaaggggcatttgaagcacca 38815728  T

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Target: chr8; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 39456608 - 39456470
Alignment:
Q  1 tatccaaccaaatggaatgctatagaactttagttagtattgcaataatcaatataat--catttcttaaccacataagatttagccaattgaaagttga 98  Q
    |||||||||||||| |||||||||  ||| || |||||| || ||||||||| |||||  |||||||||| |||||||||||||| ||||||||||||||    
T  39456608 tatccaaccaaatgtaatgctataacactctaattagtactgtaataatcaacataatgtcatttcttaatcacataagatttagtcaattgaaagttga 39456509  T
Q  99 aatagcatcatagatcgcattctaccacaaggggcatttg 138  Q
    ||||||| | ||  || |||| ||||||||||| ||||||    
T  39456508 aatagcaccgta-ttcacattttaccacaagggacatttg 39456470  T

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Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 145 - 214
Target Start/End: Complemental strand, 39456371 - 39456301
Alignment:
Q  145 cactcaagcttctttgtgcaaataggctcacttgtctttcagca-catggcttaattttaaccttcttttt 214  Q
    |||||||||||| |||||||||||||||||||||||||||||||  |||||| |||||||||  |||||||    
T  39456371 cactcaagcttcattgtgcaaataggctcacttgtctttcagcataatggctcaattttaacaatcttttt 39456301  T

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Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 39464076 - 39464003
Alignment:
Q  142 caccactcaagcttctttgtgcaaataggctcacttgtctttcagca-catggcttaattttaaccttcttttt 214  Q
    |||||||||||||||||||||||||| |||||||||| | |||||||  |||||| ||||||| ||||||||||    
T  39464076 caccactcaagcttctttgtgcaaattggctcacttgacattcagcataatggctcaattttagccttcttttt 39464003  T

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Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 39407095 - 39407241
Alignment:
Q  1 tatccaaccaaatggaatgctatagaactttagttagtattgcaataatcaatataat--catttcttaaccacataagatttagccaattgaaagttga 98  Q
    ||||||||||||||||||||||||  |||||||||||||||  |||||||||||||||  |||||| |||||||||||||||||| ||||| ||||||||    
T  39407095 tatccaaccaaatggaatgctataacactttagttagtattctaataatcaatataatttcatttcctaaccacataagatttagtcaattcaaagttga 39407194  T
Q  99 aatagcatcatagatcgcattctaccacaaggggcatttgcagcacc 145  Q
    |||| ||||||||||| |||||||||| ||| |||||||| ||||||    
T  39407195 aatatcatcatagatcacattctaccaaaagcggcatttgaagcacc 39407241  T

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Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 20148376 - 20148233
Alignment:
Q  1 tatccaaccaaatggaatgctatagaactttagttagtattgcaat------aatcaatataat--catttcttaaccacataagatttagccaattgaa 92  Q
    ||||| |||||| |||||||||||  |||||||||||||||| |||      ||||||||||||  |||||||||||||||||||||||||  |||||||    
T  20148376 tatccgaccaaaaggaatgctataacactttagttagtattgtaattgtaataatcaatataatatcatttcttaaccacataagatttagttaattgaa 20148277  T
Q  93 agttgaaatagcatcatagatcgcattctaccacaaggggcatt 136  Q
    ||| |||||||||||||||||| |||| ||||||| ||| ||||    
T  20148276 agtagaaatagcatcatagatctcattataccacaggggacatt 20148233  T

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Target: scaffold0095 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 13132 - 13270
Alignment:
Q  1 tatccaaccaaatggaatgctatagaactttagttagtattgcaataatcaatataat--catttcttaaccacataagatttagccaattgaaagttga 98  Q
    |||||||||||||| |||||||||  ||| || |||||| || ||||||||| |||||  |||||||||| |||||||||||||| ||||||||||||||    
T  13132 tatccaaccaaatgtaatgctataacactctaattagtactgtaataatcaacataatgtcatttcttaatcacataagatttagtcaattgaaagttga 13231  T
Q  99 aatagcatcatagatcgcattctaccacaaggggcatttg 138  Q
    ||||||| | ||  || |||| ||||||||||| ||||||    
T  13232 aatagcaccgta-ttcacattttaccacaagggacatttg 13270  T

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Target: scaffold0095; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 145 - 214
Target Start/End: Original strand, 13369 - 13439
Alignment:
Q  145 cactcaagcttctttgtgcaaataggctcacttgtctttcagca-catggcttaattttaaccttcttttt 214  Q
    |||||||||||| |||||||||||||||||||||||||||||||  |||||| |||||||||  |||||||    
T  13369 cactcaagcttcattgtgcaaataggctcacttgtctttcagcataatggctcaattttaacaatcttttt 13439  T

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Target: scaffold0095; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 214
Target Start/End: Original strand, 24425 - 24498
Alignment:
Q  142 caccactcaagcttctttgtgcaaataggctcacttgtctttcagca-catggcttaattttaaccttcttttt 214  Q
    |||||||||||||||||||||||||| |||||||||| | |||||||  |||||| ||||||| ||||||||||    
T  24425 caccactcaagcttctttgtgcaaattggctcacttgacattcagcataatggctcaattttagccttcttttt 24498  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 12081292 - 12081236
Alignment:
Q  58 tcatttcttaaccacataagatttagccaattgaaagttgaaatagcatcatagatc 114  Q
    |||| |||||| |||||||||||||| ||| ||||||||||||||||||||||||||    
T  12081292 tcatatcttaagcacataagatttagtcaactgaaagttgaaatagcatcatagatc 12081236  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 12088185 - 12088078
Alignment:
Q  1 tatccaaccaaatggaatgctatagaactttagttagtattgcaataatcaatataa--tcatttcttaaccacataagatttagccaattgaaagttga 98  Q
    |||||||| ||||||||||||| |  ||||||| |||||||| ||||||||||||||  |  |||||||||||  |||  ||||| ||||||||||| ||    
T  12088185 tatccaacaaaatggaatgctacaacactttagctagtattgtaataatcaatataatgttttttcttaaccatgtaatgtttagtcaattgaaagtaga 12088086  T
Q  99 aatagcat 106  Q
    ||||||||    
T  12088085 aatagcat 12088078  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 234
Target Start/End: Complemental strand, 12087948 - 12087859
Alignment:
Q  145 cactcaagcttctttgtgcaaataggctcacttgtctttcagca-catggcttaattttaaccttctttttctaaactagatctgcttcat 234  Q
    ||||||||||| ||  ||||||| | |||| |||||||||||||  ||||||  |||||| ||||||||||| ||||||||| ||||||||    
T  12087948 cactcaagctttttaatgcaaattgtctcatttgtctttcagcataatggctatattttagccttctttttc-aaactagatatgcttcat 12087859  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 234
Target Start/End: Complemental strand, 12081135 - 12081045
Alignment:
Q  143 accactcaagcttctttgtgcaaataggctcacttgtctttcagca-catggcttaattttaaccttctttttctaaactagatctgcttcat 234  Q
    |||||| |||||  |||| |||||| |||||||||||| |||| ||  ||||||||||||||  |||||||||| ||||||| ||||||||||    
T  12081135 accactgaagctaatttgagcaaattggctcacttgtc-ttcaacataatggcttaattttagacttctttttc-aaactagctctgcttcat 12081045  T

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