View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20382_low_34 (Length: 213)
Name: NF20382_low_34
Description: NF20382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20382_low_34 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 109; Significance: 5e-55; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 72 - 209
Target Start/End: Original strand, 40948565 - 40948698
Alignment:
| Q |
72 |
attggtaatactgtgttgaatgtttttatccgaagttgaggaaatattgtaactaactagtcatgtgaacatcatcttatgttgtgtcatctaaagtgtt |
171 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
40948565 |
attggtaatactgcgttgaatgtttttatccgaagttgaggaaatattgtaac----tagtcatgtgaacatcatcttatgttgtgtcatctaaagtggt |
40948660 |
T |
|
| Q |
172 |
cgttgttgtttgacattcttgttcattgttgaagagaa |
209 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
40948661 |
cgttgttgtttgacattcttcttcattgttgaagagaa |
40948698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 72 - 209
Target Start/End: Original strand, 40945706 - 40945841
Alignment:
| Q |
72 |
attggtaatact--gtgttgaatgtttttatccgaagttgaggaaatattgtaactaactagtcatgtgaacatcatcttatgttgtgtcatctaaagtg |
169 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
40945706 |
attggtaatactttgtgttcaatgtttttatccgaagtcgaggaaatattgtaac----tagtcatgtgaacatcatcttgtgttgtgtcatctaaagta |
40945801 |
T |
|
| Q |
170 |
ttcgttgttgtttgacattcttgttcattgttgaagagaa |
209 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
40945802 |
gtcgttgtcattggacattcttgttcattgttgaagagaa |
40945841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University