View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20382_low_6 (Length: 594)
Name: NF20382_low_6
Description: NF20382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20382_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 555; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 16 - 578
Target Start/End: Original strand, 39109386 - 39109948
Alignment:
| Q |
16 |
ataaactaccgcttttcacaagctctgattatcaatctgctatggactcggtatgcagaaggattggtgtgacagataaatgcaacaagcaaagctttca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39109386 |
ataaactaccgcttttcacaagctctgactatcaatctgctatggactcggtatgcagaaggattggtgtgacagataaatgcaacaagcaaagctttca |
39109485 |
T |
|
| Q |
116 |
aaatcaagttcttcggaaagggtgtgagagaattggtttaaaagtcgagtcagttgcagtgaatgcttcagaagatcattattgcggttcgtgctgttac |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39109486 |
aaatcaagttcttcggaaagggtgtgagagaattggtttaaaagtcgagtcagttgcagtgaatgcttcagaagatcattattgcggttcgtgctgttac |
39109585 |
T |
|
| Q |
216 |
ggttgtagaaccggagataaaaagggtactgactcaacttggttggttgatgctgttgaaaatggcgcagttatcctcactggatgtagagctgagaaat |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39109586 |
ggttgtagaaccggagataaaaagggtactgactcaacttggttggttgatgctgttgaaaatggcgcagttatcctcactggatgtagagctgagaaat |
39109685 |
T |
|
| Q |
316 |
tcataatagaaaatgggaagaatggaacaaagagaaagaattgctcaggagtgattgctgcaacaagttggaggagtaagattacaaagaaactccaaat |
415 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39109686 |
tcataatagaaaatgggaagaatgaaacaaagagaaagaattgctcaggagtgattgctgcaacaagttggaggagtaagattacaaagaaactccaaat |
39109785 |
T |
|
| Q |
416 |
agaatccaaagtaactatttcatcatgtggatcactacttacacctcctctaatgatttctagtggactacaaaatccaaacattggaagaaaccttcat |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39109786 |
agaatccaaagtaactatttcatcatgtggatcactacttacacctcctctaatgatttctagtggactacaaaatccaaacattggaagaaaccttcat |
39109885 |
T |
|
| Q |
516 |
ctccatccagttcaatttgcttggggctatttccctgaaaacatgacaaacttaagtggtaat |
578 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39109886 |
ctccatccagttcaatttgcttggggctatttccctgaaaacatgacaaacttaagtggtaat |
39109948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University