View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20382_low_7 (Length: 573)
Name: NF20382_low_7
Description: NF20382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20382_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 266 - 557
Target Start/End: Original strand, 7571061 - 7571352
Alignment:
| Q |
266 |
ttttacaatgaatggaatttcaaaaatattttgtcaacactaattttaggggattttaaataccacctaaaaattaaggatttgaaatttcttctttact |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
7571061 |
ttttacaatgaatggaatttcaaaaatattttgtcaacactaattttaggggattttaaataccacctaaaaattaagaatttgaaatttcttctttact |
7571160 |
T |
|
| Q |
366 |
ctataaaatgttaatcacaaattggtcattatagttctttacacattagtctatatttccagaatttgcaaattgctccttaaattttaaaaacttaaag |
465 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||| |
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| T |
7571161 |
ctataaaatgttaatcacaaattggtcattatagttctttacacattagtctatatttccagaatttgcagattgctctttaaattttaaaaatttaaag |
7571260 |
T |
|
| Q |
466 |
attggcccctcaactttttaaaactacaaatttaatccaaaactttaaaatttctcattttagatcaattttcatggtatatttaaactttt |
557 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
7571261 |
attggcccctcaactttttaaaactacaaatttaatccaaaactttaaaatttctcattttagatcaattttcatcgtatatttaaactttt |
7571352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 7570782 - 7571035
Alignment:
| Q |
1 |
agttaaaaatatgaagatttatcaaatattgctatattgttcaattggagtaatagctggtatggttggagggttgcttggtctaggaggtggcttcatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7570782 |
agttaaaaatatgaagatttatcaaatattgctatattgttcaattggagtaatagctggtatggttggagggttgcttggtctaggaggtggcttcatt |
7570881 |
T |
|
| Q |
101 |
ttggggccactctttctagaaatgggaattcctccgcaggtacattcttcgtaattcttgtgtgtttggattagaggattttatgaaataatgtagtttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7570882 |
ttggggccactctttctagaaatgggaattcctccgcaggtacattcttcgtaattcttgtgtgtttggattagaggattttatgaaataatgtagtttt |
7570981 |
T |
|
| Q |
201 |
agagagtaatttaaatcttttggtgtaaattttaatatttcattgtttaaacga |
254 |
Q |
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||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
7570982 |
agagagtaatttaaatcctttggtgcaaattttaatatttcattgtttaaacga |
7571035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 367
Target Start/End: Original strand, 42240328 - 42240377
Alignment:
| Q |
318 |
attttaaataccacctaaaaattaaggatttgaaatttcttctttactct |
367 |
Q |
| |
|
|||| ||||| |||||||| |||||| |||||||||||||| |||||||| |
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|
| T |
42240328 |
atttcaaatatcacctaaacattaagaatttgaaatttcttttttactct |
42240377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 46 - 144
Target Start/End: Complemental strand, 33124192 - 33124094
Alignment:
| Q |
46 |
tggagtaatagctggtatggttggagggttgcttggtctaggaggtggcttcattttggggccactctttctagaaatgggaattcctccgcaggtaca |
144 |
Q |
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|||| ||||||||||||||||| | || |||||||||||||| ||||||||||||||||| ||| | ||| | ||| ||||||||||||| |||||||| |
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| T |
33124192 |
tggaataatagctggtatggttagtggtttgcttggtctaggtggtggcttcattttgggaccattgtttttggaattgggaattcctcctcaggtaca |
33124094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 363
Target Start/End: Complemental strand, 34700626 - 34700583
Alignment:
| Q |
320 |
tttaaataccacctaaaaattaaggatttgaaatttcttcttta |
363 |
Q |
| |
|
|||| ||||||||||||||||| | ||||||||||||||||||| |
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| T |
34700626 |
tttagataccacctaaaaattatgaatttgaaatttcttcttta |
34700583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 318 - 389
Target Start/End: Complemental strand, 46381274 - 46381203
Alignment:
| Q |
318 |
attttaaataccacctaaaaattaaggatttgaaatttcttctttactctataaaatgttaatcacaaattg |
389 |
Q |
| |
|
|||| |||||||||||||||| |||| ||||||||||| ||| | ||||||||| ||||||||| ||||||| |
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| T |
46381274 |
atttaaaataccacctaaaaaataagaatttgaaatttgttcctcactctataagatgttaatctcaaattg |
46381203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 310 - 398
Target Start/End: Complemental strand, 34660340 - 34660252
Alignment:
| Q |
310 |
tttaggggattttaaataccacctaaaaattaaggatttgaaatttcttctttactctataaaatgttaatcacaaattggtcattata |
398 |
Q |
| |
|
|||||||||||| ||||||||| |||||| |||| | || |||||||||| |||||||| | ||||| |||| ||||||| || ||||| |
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| T |
34660340 |
tttaggggatttcaaataccacttaaaaactaagaaatttaaatttcttccttactctaaacaatgtgaatctcaaattgatctttata |
34660252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 288 - 390
Target Start/End: Complemental strand, 31938450 - 31938348
Alignment:
| Q |
288 |
aaaatattttgtcaacactaattttaggggattttaaataccacctaaaaattaaggatttgaaatttcttctttactctataaaatgttaatcacaaat |
387 |
Q |
| |
|
|||||||||||| || | ||| ||||| | | || |||||||| ||||||||| || |||||||||||||| ||| ||||| ||||| |||| ||||| |
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| T |
31938450 |
aaaatattttgttaatattaaatttagagaagttcaaataccatctaaaaatttagaatttgaaatttctttcctacactatacaatgtgaatctcaaat |
31938351 |
T |
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| Q |
388 |
tgg |
390 |
Q |
| |
|
||| |
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| T |
31938350 |
tgg |
31938348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 318 - 391
Target Start/End: Complemental strand, 14137400 - 14137328
Alignment:
| Q |
318 |
attttaaataccacctaaaaattaaggatttgaaatttcttctttactctataaaatgttaatcacaaattggt |
391 |
Q |
| |
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|||| |||||||||||||||| ||| || || |||||||||| |||||||||| ||||| |||| ||||||||| |
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| T |
14137400 |
atttcaaataccacctaaaaactaa-gaattaaaatttcttcattactctatacaatgtgaatctcaaattggt |
14137328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 332 - 402
Target Start/End: Complemental strand, 28643192 - 28643122
Alignment:
| Q |
332 |
ctaaaaattaaggatttgaaatttcttctttactctataaaatgttaatcacaaattggtcattatagttc |
402 |
Q |
| |
|
||||||| |||| |||| ||||| ||| |||||||||||||||| |||| |||||| |||||||||||| |
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|
| T |
28643192 |
ctaaaaactaagaatttaaaattctttccttactctataaaatgtgaatctcaaattattcattatagttc |
28643122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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