View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20383_high_5 (Length: 292)

Name: NF20383_high_5
Description: NF20383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20383_high_5
NF20383_high_5
[»] chr6 (9 HSPs)
chr6 (1-272)||(11133255-11133526)
chr6 (3-267)||(11196989-11197253)
chr6 (1-269)||(11276218-11276486)
chr6 (31-267)||(11156536-11156772)
chr6 (1-269)||(11170834-11171102)
chr6 (1-269)||(11209656-11209924)
chr6 (31-267)||(11200154-11200394)
chr6 (1-269)||(11241082-11241350)
chr6 (31-193)||(11161489-11161651)
[»] scaffold1207 (1 HSPs)
scaffold1207 (37-269)||(1149-1381)
[»] chr7 (3 HSPs)
chr7 (58-274)||(8017106-8017322)
chr7 (172-266)||(39985913-39986007)
chr7 (172-260)||(8581973-8582061)


Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 11133526 - 11133255
Alignment:
Q  1 ttgtggccatttaaagtaattggtggcataaatgacaaacccaatattgttgtcaattacaatggagaggaaaaacatttttctgctgagcaaatatcat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  11133526 ttgtggccatttaaagtaattggtggcataaatgacaaacccaatattgttgtcaattacaatggagaggaaaaacattttgctgctgaggaaatatcat 11133427  T
Q  101 caatggtattgacaaaaattcgtgaaattgcagaagtttaccttggatcaacagtgaaggatgtcgttataactgttcctgcttactttaatgactcgca 200  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11133426 caatggtattgacaaaaattcgtgagattgcagaagtttaccttggatcaacagtgaaggatgtcgttataactgttcctgcttactttaatgactcgca 11133327  T
Q  201 acgccaagctactagagatgcaggtgttattgcacgtctcaacgttatgcgaataatcaacgagcctacagc 272  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  11133326 acgccaagctactagagatgcaggtgttattgcaggtctcaacgttatgcgaataatcaacgagcctacagc 11133255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 3 - 267
Target Start/End: Complemental strand, 11197253 - 11196989
Alignment:
Q  3 gtggccatttaaagtaattggtggcataaatgacaaacccaatattgttgtcaattacaatggagaggaaaaacatttttctgctgagcaaatatcatca 102  Q
    |||||| || ||||||||||| | | | |||||||||||||  |||||||| || || ||||  |||||||| |||||| |||||||  |||| |||||     
T  11197253 gtggcccttcaaagtaattggcgacctcaatgacaaacccatgattgttgttaactataatgacgaggaaaagcattttgctgctgaagaaatctcatcg 11197154  T
Q  103 atggtattgacaaaaattcgtgaaattgcagaagtttaccttggatcaacagtgaaggatgtcgttataactgttcctgcttactttaatgactcgcaac 202  Q
    ||||||||| |||||||    || || || |||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||    
T  11197153 atggtattggcaaaaatggccgagatagctgaagcttaccttggatcaacagtgaaggatgttgttataactgtgcctgcttactttaatgactcacaac 11197054  T
Q  203 gccaagctactagagatgcaggtgttattgcacgtctcaacgttatgcgaataatcaacgagcct 267  Q
    ||||  | ||| ||||||| |||||||||||  | ||||| ||||||||||||||||| ||||||    
T  11197053 gccagtccactcgagatgcgggtgttattgctggcctcaatgttatgcgaataatcaatgagcct 11196989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 11276486 - 11276218
Alignment:
Q  1 ttgtggccatttaaagtaattggtggcataaatgacaaacccaatattgttgtcaattacaatggagaggaaaaacatttttctgctgagcaaatatcat 100  Q
    ||||||||||| ||||||||||||| | | |||||||||||||  |||||||| || || ||||  |||||||| |||||| |||||||  |||| ||||    
T  11276486 ttgtggccattcaaagtaattggtgacctgaatgacaaacccatgattgttgttaactataatgacgaggaaaagcattttactgctgaagaaatctcat 11276387  T
Q  101 caatggtattgacaaaaattcgtgaaattgcagaagtttaccttggatcaacagtgaaggatgtcgttataactgttcctgcttactttaatgactcgca 200  Q
    | ||||||||| | ||||| || || || |||||||  | |||||||| ||||||| ||||||| ||||||||||| ||||| |||||||||||||| ||    
T  11276386 ccatggtattggcgaaaatgcgcgagatagcagaagccttccttggattaacagtggaggatgttgttataactgtgcctgcatactttaatgactcaca 11276287  T
Q  201 acgccaagctactagagatgcaggtgttattgcacgtctcaacgttatgcgaataatcaacgagcctac 269  Q
     |||||  ||||| ||||||| |||| ||||||  | || ||||||||||||||||| || ||||||||    
T  11276286 gcgccagtctactcgagatgcgggtgctattgctggcctaaacgttatgcgaataataaatgagcctac 11276218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 31 - 267
Target Start/End: Complemental strand, 11156772 - 11156536
Alignment:
Q  31 aatgacaaacccaatattgttgtcaattacaatggagaggaaaaacatttttctgctgagcaaatatcatcaatggtattgacaaaaattcgtgaaattg 130  Q
    |||||||||||||  |||||||| || || || |  |||||||| |||||| |||||||  |||| ||||| ||||||||| |||||||    || || |    
T  11156772 aatgacaaacccatgattgttgttaactataaagacgaggaaaagcattttgctgctgaagaaatctcatcgatggtattggcaaaaatggccgagatag 11156673  T
Q  131 cagaagtttaccttggatcaacagtgaaggatgtcgttataactgttcctgcttactttaatgactcgcaacgccaagctactagagatgcaggtgttat 230  Q
    | |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||  | ||   |||||| ||||||||    
T  11156672 ctgaagtttaccttggatcaacagtgaaggatgttgttataactgtgcctgcttactttaatgactcacaacgccagtccacccaagatgcgggtgttat 11156573  T
Q  231 tgcacgtctcaacgttatgcgaataatcaacgagcct 267  Q
    |||  | ||||| ||||||||||||||||| ||||||    
T  11156572 tgctggcctcaatgttatgcgaataatcaatgagcct 11156536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 11171102 - 11170834
Alignment:
Q  1 ttgtggccatttaaagtaattggtggcataaatgacaaacccaatattgttgtcaattacaatggagaggaaaaacatttttctgctgagcaaatatcat 100  Q
    ||||||||||| ||||||||||||| | | |||||||||||||  |||||||| || || ||||  ||||||||||||||| |||||||  |||| ||||    
T  11171102 ttgtggccattcaaagtaattggtgacctgaatgacaaacccatgattgttgttaactataatgacgaggaaaaacattttgctgctgaagaaatctcat 11171003  T
Q  101 caatggtattgacaaaaattcgtgaaattgcagaagtttaccttggatcaacagtgaaggatgtcgttataactgttcctgcttactttaatgactcgca 200  Q
    | |||||||||   ||||| || || || ||||||   | ||||||||||| |||| ||||||| ||||||||||| ||||| |||||||||||||| ||    
T  11171002 ccatggtattggtgaaaatgcgcgagatagcagaaaccttccttggatcaatagtggaggatgttgttataactgtgcctgcatactttaatgactcaca 11170903  T
Q  201 acgccaagctactagagatgcaggtgttattgcacgtctcaacgttatgcgaataatcaacgagcctac 269  Q
    ||||||  ||||| ||||||| |||| ||||||  | ||||| ||| |||||||| |||| ||||||||    
T  11170902 acgccagtctactcgagatgcgggtgctattgctggcctcaatgttttgcgaatactcaatgagcctac 11170834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 11209924 - 11209656
Alignment:
Q  1 ttgtggccatttaaagtaattggtggcataaatgacaaacccaatattgttgtcaattacaatggagaggaaaaacatttttctgctgagcaaatatcat 100  Q
    ||||||||||| ||||||||||| | | |||||||||||||||  |||||||| || || || |  |||||||| |||||| |||||||  |||| ||||    
T  11209924 ttgtggccattcaaagtaattggcgacctaaatgacaaacccatgattgttgttaactataaagacgaggaaaagcattttgctgctgaagaaatctcat 11209825  T
Q  101 caatggtattgacaaaaattcgtgaaattgcagaagtttaccttggatcaacagtgaaggatgtcgttataactgttcctgcttactttaatgactcgca 200  Q
    | ||||||||| | ||||| || || |  |||||||  | |||||||||||||||| | ||||| ||||||||||| ||||| |||||||||||||| ||    
T  11209824 ccatggtattggcgaaaatgcgagagacagcagaagccttccttggatcaacagtggatgatgttgttataactgtgcctgcatactttaatgactcaca 11209725  T
Q  201 acgccaagctactagagatgcaggtgttattgcacgtctcaacgttatgcgaataatcaacgagcctac 269  Q
    ||||||  ||||| ||||||| |||| ||||||  | ||||| ||| |||||||| |||| ||||||||    
T  11209724 acgccagtctactcgagatgcgggtgctattgctggcctcaatgttttgcgaatactcaatgagcctac 11209656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 31 - 267
Target Start/End: Complemental strand, 11200394 - 11200154
Alignment:
Q  31 aatgacaaacccaatattgttgtcaattacaatggagaggaaaaacatttttctgctgagcaaatatcatcaatggtattgacaaaaattcgtgaaattg 130  Q
    |||||||||||||  |||||||| || || ||||  |||||||| |||||| |||| ||  |||| ||||| |||||||||||||||||  | || ||||    
T  11200394 aatgacaaacccatgattgttgttaactataatgacgaggaaaagcattttgctgcagaagaaatctcatccatggtattgacaaaaatgggcgagattg 11200295  T
Q  131 cagaagtttaccttggatcaacagtgaaggatgtcgttataactgttcctgcttactttaatgactcgcaacg----ccaagctactagagatgcaggtg 226  Q
    | |||| ||||||||||||||||||||||||||| ||||||| ||| ||| | ||||||||||| || |||||    |||  ||||| ||||||| ||||    
T  11200294 ctgaagcttaccttggatcaacagtgaaggatgttgttataattgtgcctacatactttaatgattcacaacgtacgccagtctacttgagatgcgggtg 11200195  T
Q  227 ttattgcacgtctcaacgttatgcgaataatcaacgagcct 267  Q
     ||||||  | ||||| ||| ||||||||||||| ||||||    
T  11200194 ctattgctggcctcaatgttttgcgaataatcaatgagcct 11200154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 11241082 - 11241350
Alignment:
Q  1 ttgtggccatttaaagtaattggtggcataaatgacaaacccaatattgttgtcaattacaatggagaggaaaaacatttttctgctgagcaaatatcat 100  Q
    |||||||| || ||||||||||| | | | |||||||||| ||  | | |||| || || ||||  |||||||| |||||  |||||||  |||| ||||    
T  11241082 ttgtggcccttcaaagtaattggcgacctgaatgacaaacacatgactattgttaactataatgacgaggaaaagcatttcgctgctgaagaaatctcat 11241181  T
Q  101 caatggtattgacaaaaattcgtgaaattgcagaagtttaccttggatcaacagtgaaggatgtcgttataactgttcctgcttactttaatgactcgca 200  Q
    | ||||||||| |||||||     | || || |||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||    
T  11241182 cgatggtattggcaaaaatggccaagatagctgaagcttaccttggatcaacagtgaaggatgttgttataactgtgcctgcttactttaatgactcaca 11241281  T
Q  201 acgccaagctactagagatgcaggtgttattgcacgtctcaacgttatgcgaataatcaacgagcctac 269  Q
    ||||||  ||| | ||||||| |||| ||||||  | ||||| ||| || |||||||||  ||||||||    
T  11241282 acgccagtctattcgagatgcgggtgctattgctggcctcaaagttttgtgaataatcactgagcctac 11241350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 31 - 193
Target Start/End: Complemental strand, 11161651 - 11161489
Alignment:
Q  31 aatgacaaacccaatattgttgtcaattacaatggagaggaaaaacatttttctgctgagcaaatatcatcaatggtattgacaaaaattcgtgaaattg 130  Q
    |||||||||||||  |||||||| || || ||||  |||||||| |||||| |||| ||  |||| ||||| |||||||||||||||||  | || ||||    
T  11161651 aatgacaaacccatgattgttgttaactataatgacgaggaaaagcattttgctgcagaagaaatctcatccatggtattgacaaaaatgggcgagattg 11161552  T
Q  131 cagaagtttaccttggatcaacagtgaaggatgtcgttataactgttcctgcttactttaatg 193  Q
    | |||| ||||||||||||||||||||||||||| ||||||| ||| ||| | ||||||||||    
T  11161551 ctgaagcttaccttggatcaacagtgaaggatgttgttataattgtgcctacatactttaatg 11161489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1207 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: scaffold1207
Description:

Target: scaffold1207; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 37 - 269
Target Start/End: Complemental strand, 1381 - 1149
Alignment:
Q  37 aaacccaatattgttgtcaattacaatggagaggaaaaacatttttctgctgagcaaatatcatcaatggtattgacaaaaattcgtgaaattgcagaag 136  Q
    |||||||  |||||||| || || ||||  |||||||| |||||| |||||||  |||| ||||| ||||||||| | ||||| || || |  |||||||    
T  1381 aaacccatgattgttgttaactataatgacgaggaaaagcattttgctgctgaagaaatctcatccatggtattggcgaaaatgcgcgagacagcagaag 1282  T
Q  137 tttaccttggatcaacagtgaaggatgtcgttataactgttcctgcttactttaatgactcgcaacgccaagctactagagatgcaggtgttattgcacg 236  Q
      | |||||||||||||||| ||||||| ||||||||||| ||||| |||||||||||||| ||||||||| ||||| |||||||||||| ||||||  |    
T  1281 ccttccttggatcaacagtggaggatgttgttataactgtgcctgcatactttaatgactcacaacgccaatctactcgagatgcaggtgctattgctgg 1182  T
Q  237 tctcaacgttatgcgaataatcaacgagcctac 269  Q
     ||||| ||| || ||||| |||| ||||||||    
T  1181 cctcaatgttttgggaatactcaatgagcctac 1149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 274
Target Start/End: Original strand, 8017106 - 8017322
Alignment:
Q  58 tacaatggagaggaaaaacatttttctgctgagcaaatatcatcaatggtattgacaaaaattcgtgaaattgcagaagtttaccttggatcaacagtga 157  Q
    ||||| || ||||| || || ||| |||||||| |||| || || |||||| | | ||| || ||||| ||||| |||| |||||| || ||||| ||||    
T  8017106 tacaagggtgaggacaagcaatttgctgctgaggaaatttcgtctatggtactcataaagatgcgtgagattgctgaagcttacctcggttcaactgtga 8017205  T
Q  158 aggatgtcgttataactgttcctgcttactttaatgactcgcaacgccaagctactagagatgcaggtgttattgcacgtctcaacgttatgcgaataat 257  Q
    || ||| |||| | || ||||| |||||||| ||||| ||||| || ||||| || |  ||||| ||||| |||||| | ||||| ||| || |||| ||    
T  8017206 agaatgccgttgttacagttccagcttacttcaatgattcgcagcgtcaagccacaaaggatgccggtgtcattgcaggactcaatgttttgagaattat 8017305  T
Q  258 caacgagcctacagctg 274  Q
    ||||||||| |||||||    
T  8017306 caacgagccaacagctg 8017322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 266
Target Start/End: Complemental strand, 39986007 - 39985913
Alignment:
Q  172 actgttcctgcttactttaatgactcgcaacgccaagctactagagatgcaggtgttattgcacgtctcaacgttatgcgaataatcaacgagcc 266  Q
    ||||| |||||||||||||||||||| || || |||||||| |  ||||| || ||||||||  |||| || || |||||||| ||||| |||||    
T  39986007 actgtccctgcttactttaatgactcccagcgtcaagctaccaaggatgctggagttattgccggtcttaatgtcatgcgaattatcaatgagcc 39985913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 260
Target Start/End: Complemental strand, 8582061 - 8581973
Alignment:
Q  172 actgttcctgcttactttaatgactcgcaacgccaagctactagagatgcaggtgttattgcacgtctcaacgttatgcgaataatcaa 260  Q
    ||||| |||||||| |||||||| || |||||   ||| |||| |||||||||||  |||||| ||||||| || ||||| ||||||||    
T  8582061 actgtacctgcttattttaatgattcacaacgaagagccactaaagatgcaggtgaaattgcaggtctcaatgtaatgcggataatcaa 8581973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University