View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20383_low_1 (Length: 793)
Name: NF20383_low_1
Description: NF20383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20383_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 657; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 657; E-Value: 0
Query Start/End: Original strand, 34 - 775
Target Start/End: Complemental strand, 48558346 - 48557617
Alignment:
| Q |
34 |
tattacatcaatttctctcctattgaaaatgtcgagtaacggaacaatctcaacacatgctaaactttcaaagatcaaagcacgctttttcataattgca |
133 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48558346 |
tattacatcaatttctctcctattgaaaatgtcgagtaatggaacaatctcaacacatgctaaactttcaaagatcaaagcacgctttttcataattgca |
48558247 |
T |
|
| Q |
134 |
aagaaaatgctaaacttttatagatcaatgcacgcaatggtcatggagtcaaggttttgctctccacctgaccccgcctccgaaaacccactccattgtc |
233 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
48558246 |
aagaaaatgctaaacttttatagatcaaagcacgcaatggtcatggagtcaaggttttgctctccacctgaacccgcctcccaaaacccactccattgtc |
48558147 |
T |
|
| Q |
234 |
accaaaataaaaattaggtacccgaccctgtcctaatcggtgttctgtaaaactcaccctaccgccacttccttccttttgccctattttaacattattt |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
48558146 |
accaaaataaaaattaggtacccgaccctgtcctaatcggtgttctgtaaaacccaccctaccaccacttccttccttttgccctattttaacattattt |
48558047 |
T |
|
| Q |
334 |
ctttaaataaaccttacattaaatgcaatacaactcaaataatccataaacatggaaactgagaacctcaataaggtaacaaaagttaacatccaaatca |
433 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48558046 |
ctttaaataaaccttacattaaatgcaatacaactcaaataatccataaacatggaaactgagaacctcaataaggtaacaaaagttaacatccaaatca |
48557947 |
T |
|
| Q |
434 |
tcttactaataaaaataggtaacctcaaccttatattttgactaatattgtaacattattgatgaagatatgtatttccaaacacaccctatccattcat |
533 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48557946 |
tcttactaataaaaataggtaacctcaaccttatattttgactaatattgtaacattattgatgaagatatgtatttccaaacacaccctatc------- |
48557854 |
T |
|
| Q |
534 |
atgtccatttgtttagtccattatatagtgaattcacttgcattactttgatagccacaaaatcaacagctccgaaagaccaaaatcaaaaagaataaaa |
633 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48557853 |
-----catttgtttagtccattatatagtgaattcacttgcattactttgatagccacaaaaccaacagctccgaaagaccaaaatcaaaaagaataaaa |
48557759 |
T |
|
| Q |
634 |
ccgcatcattgtcaaaatcagttccagatcatctacgtagcaccgacatccctgattaaaggcgtgtcaccgacaccacattggatatgtgattacgttc |
733 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48557758 |
ccgcatcattgtcaaaatcagttccagatcatctatgtaacaccgacatccctgattaaaggcgtgtcaccgacaccacattggatatgtgattacgttc |
48557659 |
T |
|
| Q |
734 |
agttaattcattttctcaaattttcactagtttcaatgtgtc |
775 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
48557658 |
agttaattcattttctcaaatttttactagtgtcaatgtgtc |
48557617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 720 - 764
Target Start/End: Complemental strand, 28322288 - 28322244
Alignment:
| Q |
720 |
atgtgattacgttcagttaattcattttctcaaattttcactagt |
764 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||| |||||||| |
|
|
| T |
28322288 |
atgtgattacattcaattaattcattttctcaaattatcactagt |
28322244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 720 - 755
Target Start/End: Original strand, 18268017 - 18268052
Alignment:
| Q |
720 |
atgtgattacgttcagttaattcattttctcaaatt |
755 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |
|
|
| T |
18268017 |
atgtgattacgttcaattaattcattttctcaaatt |
18268052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 720 - 757
Target Start/End: Original strand, 14782858 - 14782895
Alignment:
| Q |
720 |
atgtgattacgttcagttaattcattttctcaaatttt |
757 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
14782858 |
atgtgattacgttcaattaattcattttttcaaatttt |
14782895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 718 - 755
Target Start/End: Complemental strand, 34625783 - 34625746
Alignment:
| Q |
718 |
atatgtgattacgttcagttaattcattttctcaaatt |
755 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
34625783 |
atatgtgattacattcaattaattcattttctcaaatt |
34625746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University